RNA–Protein interactions for RNA: ENST00000577001.1

PRPF8-216, Transcript of pre-mRNA processing factor 8, human

TSL 5

Gene PRPF8, Length 3,274 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRPF8-216	ENST00000577001	EIF3D	O15371	548 aa	Known RBP eCLIP	15.79	■□□□□ 0.12
PRPF8-216	ENST00000577001	MFAP3	P55082	362 aa		15.79	■□□□□ 0.12
PRPF8-216	ENST00000577001	DMP1	Q13316	513 aa	Predicted RBP	15.79	■□□□□ 0.12
PRPF8-216	ENST00000577001	ERMARD	Q5T6L9	678 aa		15.79	■□□□□ 0.12
PRPF8-216	ENST00000577001	ZNF365	Q70YC5	407 aa		15.79	■□□□□ 0.12
PRPF8-216	ENST00000577001	PARD3B	Q8TEW8	1205 aa		15.79	■□□□□ 0.12
PRPF8-216	ENST00000577001	FAM167B	Q9BTA0	163 aa		15.79	■□□□□ 0.12
PRPF8-216	ENST00000577001	SAYSD1	Q9NPB0	183 aa		15.79	■□□□□ 0.12
PRPF8-216	ENST00000577001	NOCT	Q9UK39	431 aa	Known RBP	15.79	■□□□□ 0.12
PRPF8-216	ENST00000577001	PIK3CA	P42336	1068 aa		15.79	■□□□□ 0.12
PRPF8-216	ENST00000577001	GCLC	P48506	637 aa	Predicted RBP	15.79	■□□□□ 0.12
PRPF8-216	ENST00000577001	NAA25	Q14CX7	972 aa		15.79	■□□□□ 0.12
PRPF8-216	ENST00000577001	SNCB	Q16143	134 aa		15.79	■□□□□ 0.12
PRPF8-216	ENST00000577001	KRT39	Q6A163	491 aa		15.79	■□□□□ 0.12
PRPF8-216	ENST00000577001	RHOT2	Q8IXI1	618 aa		15.79	■□□□□ 0.12
PRPF8-216	ENST00000577001	AGO4	Q9HCK5	861 aa	Known RBP	15.79	■□□□□ 0.12
PRPF8-216	ENST00000577001	AAAS	Q9NRG9	546 aa		15.79	■□□□□ 0.12
PRPF8-216	ENST00000577001	NXF1	Q9UBU9	619 aa	Known RBP	15.79	■□□□□ 0.12
PRPF8-216	ENST00000577001	SRGAP2C	P0DJJ0	459 aa		15.79	■□□□□ 0.12
PRPF8-216	ENST00000577001	KRT15	P19012	456 aa		15.79	■□□□□ 0.12
PRPF8-216	ENST00000577001	DSG3	P32926	999 aa		15.79	■□□□□ 0.12
PRPF8-216	ENST00000577001	LIG4	P49917	911 aa		15.79	■□□□□ 0.12
PRPF8-216	ENST00000577001	HMGCS2	P54868	508 aa		15.79	■□□□□ 0.12
PRPF8-216	ENST00000577001	DRP2	Q13474	957 aa		15.79	■□□□□ 0.12
PRPF8-216	ENST00000577001	KIF22	Q14807	665 aa		15.79	■□□□□ 0.12
PRPF8-216	ENST00000577001	EFTUD2	Q15029	972 aa	Known RBP eCLIP	15.79	■□□□□ 0.12	2e-6	■■■■□ 20.8
PRPF8-216	ENST00000577001	P3H1	Q32P28	736 aa		15.79	■□□□□ 0.12
PRPF8-216	ENST00000577001	FBXL13	Q8NEE6	735 aa		15.79	■□□□□ 0.12
PRPF8-216	ENST00000577001	RMDN2	Q96LZ7	410 aa		15.79	■□□□□ 0.12
PRPF8-216	ENST00000577001	SYT11	Q9BT88	431 aa		15.79	■□□□□ 0.12
PRPF8-216	ENST00000577001	NENF	Q9UMX5	172 aa		15.79	■□□□□ 0.12
PRPF8-216	ENST00000577001	WDR3	Q9UNX4	943 aa	Known RBP eCLIP	15.79	■□□□□ 0.12
PRPF8-216	ENST00000577001	PASK	Q96RG2	1323 aa		15.79	■□□□□ 0.12
PRPF8-216	ENST00000577001	SCN9A	Q15858	1988 aa		15.78	■□□□□ 0.12
PRPF8-216	ENST00000577001	CCT8L1P	A6NM43	557 aa		15.78	■□□□□ 0.12
PRPF8-216	ENST00000577001	ATF2	P15336	505 aa		15.78	■□□□□ 0.12
PRPF8-216	ENST00000577001	C6orf89	Q6UWU4	347 aa		15.78	■□□□□ 0.12
PRPF8-216	ENST00000577001	NLRX1	Q86UT6	975 aa		15.78	■□□□□ 0.12
PRPF8-216	ENST00000577001	OR5B17	Q8NGF7	314 aa		15.78	■□□□□ 0.12
PRPF8-216	ENST00000577001	RPAP3	Q9H6T3	665 aa	Predicted RBP	15.78	■□□□□ 0.12
PRPF8-216	ENST00000577001	DCTN4	Q9UJW0	460 aa		15.78	■□□□□ 0.12
PRPF8-216	ENST00000577001	SERPINA10	Q9UK55	444 aa		15.78	■□□□□ 0.12
PRPF8-216	ENST00000577001	THSD7A	Q9UPZ6	1657 aa		15.78	■□□□□ 0.12
PRPF8-216	ENST00000577001	ZNF536	O15090	1300 aa		15.78	■□□□□ 0.12
PRPF8-216	ENST00000577001	C2orf71	A6NGG8	1288 aa		15.78	■□□□□ 0.12
PRPF8-216	ENST00000577001	NSF	P46459	744 aa	Known RBP	15.78	■□□□□ 0.12
PRPF8-216	ENST00000577001	SESN3	P58005	492 aa		15.78	■□□□□ 0.12
PRPF8-216	ENST00000577001	HELQ	Q8TDG4	1101 aa		15.78	■□□□□ 0.12
PRPF8-216	ENST00000577001	ATXN2L	Q8WWM7	1075 aa	Known RBP	15.78	■□□□□ 0.12
PRPF8-216	ENST00000577001	NAP1L3	Q99457	506 aa	Predicted RBP	15.78	■□□□□ 0.12
PRPF8-216	ENST00000577001		F8VP50	259 aa		15.78	■□□□□ 0.12
PRPF8-216	ENST00000577001	IGF2BP3	O00425	579 aa	Known RBP eCLIP	15.78	■□□□□ 0.12
PRPF8-216	ENST00000577001	KRT19	P08727	400 aa		15.78	■□□□□ 0.12
PRPF8-216	ENST00000577001	CHRNA3	P32297	505 aa		15.78	■□□□□ 0.12
PRPF8-216	ENST00000577001	SMTN	P53814	917 aa		15.78	■□□□□ 0.12
PRPF8-216	ENST00000577001	EMC1	Q8N766	993 aa		15.78	■□□□□ 0.12
PRPF8-216	ENST00000577001	TMEM121	Q9BTD3	319 aa		15.78	■□□□□ 0.12
PRPF8-216	ENST00000577001	ADAM22	Q9P0K1	906 aa		15.78	■□□□□ 0.12
PRPF8-216	ENST00000577001	SYNGAP1	Q96PV0	1343 aa		15.77	■□□□□ 0.12
PRPF8-216	ENST00000577001	CD19	P15391	556 aa		15.77	■□□□□ 0.12
PRPF8-216	ENST00000577001	BRD2	P25440	801 aa	Known RBP	15.77	■□□□□ 0.12
PRPF8-216	ENST00000577001	GBP2	P32456	591 aa	Predicted RBP	15.77	■□□□□ 0.12
PRPF8-216	ENST00000577001	TNFSF9	P41273	254 aa		15.77	■□□□□ 0.12
PRPF8-216	ENST00000577001	CNGA2	Q16280	664 aa		15.77	■□□□□ 0.12
PRPF8-216	ENST00000577001	IZUMO3	Q5VZ72	239 aa		15.77	■□□□□ 0.12
PRPF8-216	ENST00000577001	TRIM68	Q6AZZ1	485 aa		15.77	■□□□□ 0.12
PRPF8-216	ENST00000577001	MOXD1	Q6UVY6	613 aa		15.77	■□□□□ 0.12
PRPF8-216	ENST00000577001	TRIM50	Q86XT4	487 aa		15.77	■□□□□ 0.12
PRPF8-216	ENST00000577001	CCDC60	Q8IWA6	550 aa	Predicted RBP	15.77	■□□□□ 0.12
PRPF8-216	ENST00000577001	ECT2	Q9H8V3	914 aa		15.77	■□□□□ 0.12
PRPF8-216	ENST00000577001	ODF2L	Q9ULJ1	636 aa		15.77	■□□□□ 0.12
PRPF8-216	ENST00000577001	GRAP2	O75791	330 aa		15.77	■□□□□ 0.11
PRPF8-216	ENST00000577001	FSBP	O95073	299 aa		15.77	■□□□□ 0.11
PRPF8-216	ENST00000577001	RAP1GAP	P47736	663 aa		15.77	■□□□□ 0.11
PRPF8-216	ENST00000577001	NBPF12	Q5TAG4	269 aa	Predicted RBP	15.77	■□□□□ 0.11
PRPF8-216	ENST00000577001	AGBL2	Q5U5Z8	902 aa		15.77	■□□□□ 0.11
PRPF8-216	ENST00000577001	SNRNP48	Q6IEG0	339 aa	Known RBP	15.77	■□□□□ 0.11
PRPF8-216	ENST00000577001	ANKS4B	Q8N8V4	417 aa		15.77	■□□□□ 0.11
PRPF8-216	ENST00000577001	TMEM161B	Q8NDZ6	487 aa		15.77	■□□□□ 0.11
PRPF8-216	ENST00000577001	TGS1	Q96RS0	853 aa	Known RBP	15.77	■□□□□ 0.11
PRPF8-216	ENST00000577001	POLR3F	Q9H1D9	316 aa	Predicted RBP	15.77	■□□□□ 0.11
PRPF8-216	ENST00000577001	INTU	Q9ULD6	942 aa		15.77	■□□□□ 0.11
PRPF8-216	ENST00000577001	NCAN	O14594	1321 aa		15.76	■□□□□ 0.11
PRPF8-216	ENST00000577001		A0A0A6YYK5	440 aa	Predicted RBP	15.76	■□□□□ 0.11
PRPF8-216	ENST00000577001	TLR3	O15455	904 aa	Known RBP	15.76	■□□□□ 0.11
PRPF8-216	ENST00000577001	NEFH	P12036	1026 aa		15.76	■□□□□ 0.11
PRPF8-216	ENST00000577001	BRDT	Q58F21	947 aa	Predicted RBP	15.76	■□□□□ 0.11
PRPF8-216	ENST00000577001	THNSL1	Q8IYQ7	743 aa		15.76	■□□□□ 0.11
PRPF8-216	ENST00000577001	CLEC4D	Q8WXI8	215 aa		15.76	■□□□□ 0.11
PRPF8-216	ENST00000577001	CCT6B	Q92526	530 aa		15.76	■□□□□ 0.11
PRPF8-216	ENST00000577001	R3HDML	Q9H3Y0	253 aa		15.76	■□□□□ 0.11
PRPF8-216	ENST00000577001	C1orf112	Q9NSG2	853 aa		15.76	■□□□□ 0.11
PRPF8-216	ENST00000577001	RNF146	Q9NTX7	359 aa		15.76	■□□□□ 0.11
PRPF8-216	ENST00000577001	SUGT1	Q9Y2Z0	365 aa		15.76	■□□□□ 0.11
PRPF8-216	ENST00000577001	LRRD1	A4D1F6	860 aa		15.76	■□□□□ 0.11
PRPF8-216	ENST00000577001	RASA4B	C9J798	803 aa		15.76	■□□□□ 0.11
PRPF8-216	ENST00000577001	WNT10B	O00744	389 aa		15.76	■□□□□ 0.11
PRPF8-216	ENST00000577001	RASA4	O43374	803 aa		15.76	■□□□□ 0.11
PRPF8-216	ENST00000577001	HLA-DRA	P01903	254 aa		15.76	■□□□□ 0.11
PRPF8-216	ENST00000577001	CNTN2	Q02246	1040 aa		15.76	■□□□□ 0.11

Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms