RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 DACT2Q5SW24 774 aa6.93□□□□□ -1.3
NUP88-213ENST00000576862 UBE3BQ7Z3V4 1068 aa6.93□□□□□ -1.3
NUP88-213ENST00000576862 CATIPQ7Z7H3 387 aa6.93□□□□□ -1.3
NUP88-213ENST00000576862 RSPH3Q86UC2 560 aa6.93□□□□□ -1.3
NUP88-213ENST00000576862 DRC7Q8IY82 874 aa6.93□□□□□ -1.3
NUP88-213ENST00000576862 CPT1CQ8TCG5 803 aa6.93□□□□□ -1.3
NUP88-213ENST00000576862 CLPTM1LQ96KA5 538 aa6.93□□□□□ -1.3
NUP88-213ENST00000576862 TEX101Q9BY14 249 aa6.93□□□□□ -1.3
NUP88-213ENST00000576862 GTPBP4Q9BZE4 634 aaKnown RBP6.93□□□□□ -1.3
NUP88-213ENST00000576862 CDH19Q9H159 772 aa6.93□□□□□ -1.3
NUP88-213ENST00000576862 EIF2B4Q9UI10 523 aaKnown RBP6.93□□□□□ -1.3
NUP88-213ENST00000576862 ANKRD6Q9Y2G4 727 aa6.93□□□□□ -1.3
NUP88-213ENST00000576862 TCRBV7S2A1N4TA0A589 114 aa6.92□□□□□ -1.3
NUP88-213ENST00000576862 E2F8A0AVK6 867 aa6.92□□□□□ -1.3
NUP88-213ENST00000576862 POMCP01189 267 aa6.92□□□□□ -1.3
NUP88-213ENST00000576862 SLC6A2P23975 617 aa6.92□□□□□ -1.3
NUP88-213ENST00000576862 TLE1Q04724 770 aa6.92□□□□□ -1.3
NUP88-213ENST00000576862 TUBA3CQ13748 450 aa6.92□□□□□ -1.3
NUP88-213ENST00000576862 LSM12Q3MHD2 195 aaKnown RBP6.92□□□□□ -1.3
NUP88-213ENST00000576862 PPP4R3AQ6IN85 833 aa6.92□□□□□ -1.3
NUP88-213ENST00000576862 TUBA3EQ6PEY2 450 aa6.92□□□□□ -1.3
NUP88-213ENST00000576862 USP45Q70EL2 814 aa6.92□□□□□ -1.3
NUP88-213ENST00000576862 GDF7Q7Z4P5 450 aa6.92□□□□□ -1.3
NUP88-213ENST00000576862 DCLRE1CQ96SD1 692 aaKnown RBP6.92□□□□□ -1.3
NUP88-213ENST00000576862 NUP88Q99567 741 aaPredicted RBP6.92□□□□□ -1.3
NUP88-213ENST00000576862 C11orf54Q9H0W9 315 aaPredicted RBP6.92□□□□□ -1.3
NUP88-213ENST00000576862 SLC2A4RGQ9NR83 387 aa6.92□□□□□ -1.3
NUP88-213ENST00000576862 GPRC5BQ9NZH0 403 aa6.92□□□□□ -1.3
NUP88-213ENST00000576862 RECQL4O94761 1208 aa6.91□□□□□ -1.3
NUP88-213ENST00000576862 PRSS23O95084 383 aa6.91□□□□□ -1.3
NUP88-213ENST00000576862 PEX11BO96011 259 aa6.91□□□□□ -1.3
NUP88-213ENST00000576862 SBK3P0C264 359 aa6.91□□□□□ -1.3
NUP88-213ENST00000576862 AKAP5P24588 427 aa6.91□□□□□ -1.3
NUP88-213ENST00000576862 SLC6A4P31645 630 aa6.91□□□□□ -1.3
NUP88-213ENST00000576862 RAB39AQ14964 217 aa6.91□□□□□ -1.3
NUP88-213ENST00000576862 PDCD4Q53EL6 469 aaKnown RBP6.91□□□□□ -1.3
NUP88-213ENST00000576862 AGAP9Q5VTM2 703 aa6.91□□□□□ -1.3
NUP88-213ENST00000576862 MED25Q71SY5 747 aa6.91□□□□□ -1.3
NUP88-213ENST00000576862 TTC7BQ86TV6 843 aa6.91□□□□□ -1.3
NUP88-213ENST00000576862 ZFPM1Q8IX07 1006 aa6.91□□□□□ -1.3
NUP88-213ENST00000576862 JPH3Q8WXH2 748 aaPredicted RBP6.91□□□□□ -1.3
NUP88-213ENST00000576862 ZNF341Q9BYN7 854 aa6.91□□□□□ -1.3
NUP88-213ENST00000576862 TRPM5Q9NZQ8 1165 aa6.91□□□□□ -1.3
NUP88-213ENST00000576862 ZIM2Q9NZV7 527 aa6.91□□□□□ -1.3
NUP88-213ENST00000576862 CALCOCO1Q9P1Z2 691 aa6.91□□□□□ -1.3
NUP88-213ENST00000576862 ZNF180Q9UJW8 692 aa6.91□□□□□ -1.3
NUP88-213ENST00000576862 LRRC14BA6NHZ5 514 aa6.9□□□□□ -1.3
NUP88-213ENST00000576862 DIRC3C9JPN6 131 aa6.9□□□□□ -1.3
NUP88-213ENST00000576862 NPIPB8E9PQR5 432 aa6.9□□□□□ -1.3
NUP88-213ENST00000576862 NARSO43776 548 aaKnown RBP6.9□□□□□ -1.3
NUP88-213ENST00000576862 S100BP04271 92 aaPredicted RBP6.9□□□□□ -1.3
NUP88-213ENST00000576862 C6P13671 934 aa6.9□□□□□ -1.3
NUP88-213ENST00000576862 TACR2P21452 398 aa6.9□□□□□ -1.3
NUP88-213ENST00000576862 RHOT2Q8IXI1 618 aa6.9□□□□□ -1.3
NUP88-213ENST00000576862 ZNF276Q8N554 614 aa6.9□□□□□ -1.3
NUP88-213ENST00000576862 SLC25A43Q8WUT9 341 aaPredicted RBP6.9□□□□□ -1.3
NUP88-213ENST00000576862 PHACTR3Q96KR7 559 aa6.9□□□□□ -1.3
NUP88-213ENST00000576862 CAMKK2Q96RR4 588 aa6.9□□□□□ -1.3
NUP88-213ENST00000576862 VRK1Q99986 396 aaPredicted RBP6.9□□□□□ -1.3
NUP88-213ENST00000576862 SLC46A2Q9BY10 475 aa6.9□□□□□ -1.3
NUP88-213ENST00000576862 SLC12A5Q9H2X9 1139 aa6.9□□□□□ -1.3
NUP88-213ENST00000576862 USP15Q9Y4E8 981 aaPredicted RBP6.9□□□□□ -1.3
NUP88-213ENST00000576862 KIAA0391O15091 583 aaKnown RBP6.89□□□□□ -1.31
NUP88-213ENST00000576862 GRM6O15303 877 aa6.89□□□□□ -1.31
NUP88-213ENST00000576862 ITGB1P05556 798 aa6.89□□□□□ -1.31
NUP88-213ENST00000576862 VCAM1P19320 739 aa6.89□□□□□ -1.31
NUP88-213ENST00000576862 ZXDAP98168 799 aa6.89□□□□□ -1.31
NUP88-213ENST00000576862 CREMQ03060 361 aa6.89□□□□□ -1.31
NUP88-213ENST00000576862 SNAPC2Q13487 334 aa6.89□□□□□ -1.31
NUP88-213ENST00000576862 KHDC1Q4VXA5 237 aaKnown RBP6.89□□□□□ -1.31
NUP88-213ENST00000576862 RHOUQ7L0Q8 258 aa6.89□□□□□ -1.31
NUP88-213ENST00000576862 TPH2Q8IWU9 490 aa6.89□□□□□ -1.31
NUP88-213ENST00000576862 GSTO2Q9H4Y5 243 aa6.89□□□□□ -1.31
NUP88-213ENST00000576862 PNMA8BQ9ULN7 279 aaPredicted RBP6.89□□□□□ -1.31
NUP88-213ENST00000576862 TTBK1Q5TCY1 1321 aaPredicted RBP6.89□□□□□ -1.31
NUP88-213ENST00000576862 CCDC78A2IDD5 438 aa6.88□□□□□ -1.31
NUP88-213ENST00000576862 RPS6KA4O75676 772 aa6.88□□□□□ -1.31
NUP88-213ENST00000576862 RFPL1O75677 317 aa6.88□□□□□ -1.31
NUP88-213ENST00000576862 NCR1O76036 304 aa6.88□□□□□ -1.31
NUP88-213ENST00000576862 RPLP2P05387 115 aaKnown RBP6.88□□□□□ -1.31
NUP88-213ENST00000576862 MALP21145 153 aa6.88□□□□□ -1.31
NUP88-213ENST00000576862 GCSHP23434 173 aa6.88□□□□□ -1.31
NUP88-213ENST00000576862 LRRC41Q15345 812 aa6.88□□□□□ -1.31
NUP88-213ENST00000576862 NFE2Q16621 373 aaPredicted RBP6.88□□□□□ -1.31
NUP88-213ENST00000576862 PABPC1LQ4VXU2 614 aaKnown RBP6.88□□□□□ -1.31
NUP88-213ENST00000576862 ATAT1Q5SQI0 421 aa6.88□□□□□ -1.31
NUP88-213ENST00000576862 GADL1Q6ZQY3 521 aa6.88□□□□□ -1.31
NUP88-213ENST00000576862 LRRC55Q6ZSA7 311 aa6.88□□□□□ -1.31
NUP88-213ENST00000576862 JDP2Q8WYK2 163 aa6.88□□□□□ -1.31
NUP88-213ENST00000576862 HPS3Q969F9 1004 aa6.88□□□□□ -1.31
NUP88-213ENST00000576862 KLHL11Q9NVR0 708 aa6.88□□□□□ -1.31
NUP88-213ENST00000576862 CDHR4A6H8M9 788 aa6.87□□□□□ -1.31
NUP88-213ENST00000576862 NT5C1B-RDH14C9J2C7 533 aa6.87□□□□□ -1.31
NUP88-213ENST00000576862 DTNBO60941 627 aa6.87□□□□□ -1.31
NUP88-213ENST00000576862 CD1AP06126 327 aa6.87□□□□□ -1.31
NUP88-213ENST00000576862 ELANEP08246 267 aa6.87□□□□□ -1.31
NUP88-213ENST00000576862 CT47B1P0C2W7 299 aaPredicted RBP6.87□□□□□ -1.31
NUP88-213ENST00000576862 ALAS1P13196 640 aa6.87□□□□□ -1.31
NUP88-213ENST00000576862 ZNF267Q14586 743 aaPredicted RBP6.87□□□□□ -1.31
NUP88-213ENST00000576862 PGS1Q32NB8 556 aa6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms