RNA–Protein interactions for RNA: ENST00000576241.1

CCDC40-216, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 714 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-216ENST00000576241 LIN9Q5TKA1 542 aa15.03■□□□□ -0
CCDC40-216ENST00000576241 LILRA6Q6PI73 481 aa15.03■□□□□ -0
CCDC40-216ENST00000576241 RUBCNQ92622 972 aa15.03■□□□□ -0
CCDC40-216ENST00000576241 ZNF707Q96C28 371 aaPredicted RBP15.03■□□□□ -0
CCDC40-216ENST00000576241 CDK5RAP3Q96JB5 506 aa15.03■□□□□ -0
CCDC40-216ENST00000576241 UROC1Q96N76 676 aa15.03■□□□□ -0
CCDC40-216ENST00000576241 RUSC1Q9BVN2 902 aa15.03■□□□□ -0
CCDC40-216ENST00000576241 TIPINQ9BVW5 301 aa15.03■□□□□ -0
CCDC40-216ENST00000576241 MRPL4Q9BYD3 311 aaKnown RBP15.03■□□□□ -0
CCDC40-216ENST00000576241 PRKD2Q9BZL6 878 aa15.03■□□□□ -0
CCDC40-216ENST00000576241 NT5C3AQ9H0P0 336 aa15.03■□□□□ -0
CCDC40-216ENST00000576241 CXCL16Q9H2A7 254 aa15.03■□□□□ -0
CCDC40-216ENST00000576241 TMEM134Q9H6X4 195 aa15.03■□□□□ -0
CCDC40-216ENST00000576241 KCNK12Q9HB15 430 aa15.03■□□□□ -0
CCDC40-216ENST00000576241 IGSF9Q9P2J2 1179 aa15.03■□□□□ -0
CCDC40-216ENST00000576241 DENND4AQ7Z401 1863 aa15.02■□□□□ -0
CCDC40-216ENST00000576241 TMEM189-UBE2V1I3L0A0 370 aa15.02■□□□□ -0
CCDC40-216ENST00000576241 ZMYND10O75800 440 aa15.02■□□□□ -0
CCDC40-216ENST00000576241 B3GAT3O94766 335 aa15.02■□□□□ -0
CCDC40-216ENST00000576241 PAPLNO95428 1278 aa15.02■□□□□ -0
CCDC40-216ENST00000576241 GUCY2CP25092 1073 aa15.02■□□□□ -0
CCDC40-216ENST00000576241 GRM5P41594 1212 aa15.02■□□□□ -0
CCDC40-216ENST00000576241 MCM2P49736 904 aa15.02■□□□□ -0
CCDC40-216ENST00000576241 STRN3Q13033 797 aa15.02■□□□□ -0
CCDC40-216ENST00000576241 RINT1Q6NUQ1 792 aa15.02■□□□□ -0
CCDC40-216ENST00000576241 PDZRN4Q6ZMN7 1036 aaPredicted RBP15.02■□□□□ -0
CCDC40-216ENST00000576241 C1orf186Q6ZWK4 172 aa15.02■□□□□ -0
CCDC40-216ENST00000576241 KCNK18Q7Z418 384 aa15.02■□□□□ -0
CCDC40-216ENST00000576241 DAW1Q8N136 415 aa15.02■□□□□ -0
CCDC40-216ENST00000576241 KCTD17Q8N5Z5 321 aa15.02■□□□□ -0
CCDC40-216ENST00000576241 LNX1Q8TBB1 728 aaPredicted RBP15.02■□□□□ -0
CCDC40-216ENST00000576241 PPP1R10Q96QC0 940 aaKnown RBP15.02■□□□□ -0
CCDC40-216ENST00000576241 ACO2Q99798 780 aaKnown RBP15.02■□□□□ -0
CCDC40-216ENST00000576241 TCHPQ9BT92 498 aa15.02■□□□□ -0
CCDC40-216ENST00000576241 MMTAG2Q9BU76 263 aaKnown RBP15.02■□□□□ -0
CCDC40-216ENST00000576241 CDT1Q9H211 546 aa15.02■□□□□ -0
CCDC40-216ENST00000576241 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP15.02■□□□□ -0
CCDC40-216ENST00000576241 ARHGAP28Q9P2N2 729 aa15.02■□□□□ -0
CCDC40-216ENST00000576241 KCNG1Q9UIX4 513 aa15.02■□□□□ -0
CCDC40-216ENST00000576241 FBXL21Q9UKT6 434 aa15.02■□□□□ -0
CCDC40-216ENST00000576241 DUSP12Q9UNI6 340 aa15.02■□□□□ -0
CCDC40-216ENST00000576241 VWA3AA6NCI4 1184 aa15.01□□□□□ -0.01
CCDC40-216ENST00000576241 SLC16A4O15374 487 aa15.01□□□□□ -0.01
CCDC40-216ENST00000576241 TRAPPC3O43617 180 aa15.01□□□□□ -0.01
CCDC40-216ENST00000576241 N4BP1O75113 896 aaKnown RBP15.01□□□□□ -0.01
CCDC40-216ENST00000576241 HNRNPA1P09651 372 aaKnown RBP eCLIP15.01□□□□□ -0.01
CCDC40-216ENST00000576241 MCF2P10911 925 aa15.01□□□□□ -0.01
CCDC40-216ENST00000576241 OSTNP61366 133 aa15.01□□□□□ -0.01
CCDC40-216ENST00000576241 ARL6IP4Q66PJ3 421 aaKnown RBP15.01□□□□□ -0.01
CCDC40-216ENST00000576241 DCLRE1AQ6PJP8 1040 aa15.01□□□□□ -0.01
CCDC40-216ENST00000576241 GET4Q7L5D6 327 aaPredicted RBP15.01□□□□□ -0.01
CCDC40-216ENST00000576241 NXPE3Q969Y0 559 aa15.01□□□□□ -0.01
CCDC40-216ENST00000576241 RTP3Q9BQQ7 232 aa15.01□□□□□ -0.01
CCDC40-216ENST00000576241 CLSTN3Q9BQT9 956 aa15.01□□□□□ -0.01
CCDC40-216ENST00000576241 TARS2Q9BW92 718 aaKnown RBP15.01□□□□□ -0.01
CCDC40-216ENST00000576241 SLC38A7Q9NVC3 462 aa15.01□□□□□ -0.01
CCDC40-216ENST00000576241 EPS15L1Q9UBC2 864 aa15.01□□□□□ -0.01
CCDC40-216ENST00000576241 FBXW11Q9UKB1 542 aa15.01□□□□□ -0.01
CCDC40-216ENST00000576241 SMC3Q9UQE7 1217 aa15.01□□□□□ -0.01
CCDC40-216ENST00000576241 SMIM28A0A1B0GU29 152 aa15□□□□□ -0.01
CCDC40-216ENST00000576241 SFI1A8K8P3 1242 aa15□□□□□ -0.01
CCDC40-216ENST00000576241 XYLBO75191 536 aa15□□□□□ -0.01
CCDC40-216ENST00000576241 FGFR3P22607 806 aa15□□□□□ -0.01
CCDC40-216ENST00000576241 CLCNKBP51801 687 aa15□□□□□ -0.01
CCDC40-216ENST00000576241 SMTNP53814 917 aa15□□□□□ -0.01
CCDC40-216ENST00000576241 ATXN1P54253 815 aaKnown RBP15□□□□□ -0.01
CCDC40-216ENST00000576241 MAPK7Q13164 816 aa15□□□□□ -0.01
CCDC40-216ENST00000576241 UPP1Q16831 310 aa15□□□□□ -0.01
CCDC40-216ENST00000576241 PPM1LQ5SGD2 360 aa15□□□□□ -0.01
CCDC40-216ENST00000576241 HYIQ5T013 277 aa15□□□□□ -0.01
CCDC40-216ENST00000576241 MPZL3Q6UWV2 235 aa15□□□□□ -0.01
CCDC40-216ENST00000576241 CEP120Q8N960 986 aa15□□□□□ -0.01
CCDC40-216ENST00000576241 DDX27Q96GQ7 796 aaKnown RBP15□□□□□ -0.01
CCDC40-216ENST00000576241 MYADMQ96S97 322 aa15□□□□□ -0.01
CCDC40-216ENST00000576241 PTPRHQ9HD43 1115 aa15□□□□□ -0.01
CCDC40-216ENST00000576241 KCND2Q9NZV8 630 aa15□□□□□ -0.01
CCDC40-216ENST00000576241 ZSCAN21Q9Y5A6 473 aaPredicted RBP15□□□□□ -0.01
CCDC40-216ENST00000576241 GPR179Q6PRD1 2367 aa14.99□□□□□ -0.01
CCDC40-216ENST00000576241 FANCMQ8IYD8 2048 aa14.99□□□□□ -0.01
CCDC40-216ENST00000576241 CD2BP2O95400 341 aaKnown RBP14.99□□□□□ -0.01
CCDC40-216ENST00000576241 C8AP07357 584 aa14.99□□□□□ -0.01
CCDC40-216ENST00000576241 HARSP12081 509 aaKnown RBP14.99□□□□□ -0.01
CCDC40-216ENST00000576241 PLS3P13797 630 aa14.99□□□□□ -0.01
CCDC40-216ENST00000576241 FSHRP23945 695 aa14.99□□□□□ -0.01
CCDC40-216ENST00000576241 HOXA9P31269 272 aa14.99□□□□□ -0.01
CCDC40-216ENST00000576241 RAD51AP2Q09MP3 1159 aa14.99□□□□□ -0.01
CCDC40-216ENST00000576241 ANKS3Q6ZW76 656 aa14.99□□□□□ -0.01
CCDC40-216ENST00000576241 TAS1R3Q7RTX0 852 aa14.99□□□□□ -0.01
CCDC40-216ENST00000576241 SIX5Q8N196 739 aa14.99□□□□□ -0.01
CCDC40-216ENST00000576241 SYT2Q8N9I0 419 aaPredicted RBP14.99□□□□□ -0.01
CCDC40-216ENST00000576241 SPIRE2Q8WWL2 714 aa14.99□□□□□ -0.01
CCDC40-216ENST00000576241 RSAD2Q8WXG1 361 aa14.99□□□□□ -0.01
CCDC40-216ENST00000576241 ACAP3Q96P50 834 aa14.99□□□□□ -0.01
CCDC40-216ENST00000576241 PLIN2Q99541 437 aa14.99□□□□□ -0.01
CCDC40-216ENST00000576241 NTPCRQ9BSD7 190 aaKnown RBP14.99□□□□□ -0.01
CCDC40-216ENST00000576241 GOLGA2P5Q9HBQ8 144 aa14.99□□□□□ -0.01
CCDC40-216ENST00000576241 ANKFY1Q9P2R3 1169 aa14.99□□□□□ -0.01
CCDC40-216ENST00000576241 MTRRQ9UBK8 725 aa14.99□□□□□ -0.01
CCDC40-216ENST00000576241 POLIQ9UNA4 740 aa14.99□□□□□ -0.01
CCDC40-216ENST00000576241 TOM1L1O75674 476 aa14.98□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms