RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 CCDC137Q6PK04 289 aaKnown RBP10.79□□□□□ -0.68
VPS53-220ENST00000576149 ZDHHC24Q6UX98 284 aa10.79□□□□□ -0.68
VPS53-220ENST00000576149 CRELD2Q6UXH1 353 aaPredicted RBP10.79□□□□□ -0.68
VPS53-220ENST00000576149 ARFGAP2Q8N6H7 521 aa10.79□□□□□ -0.68
VPS53-220ENST00000576149 ASAP3Q8TDY4 903 aa10.79□□□□□ -0.68
VPS53-220ENST00000576149 FNBP1Q96RU3 617 aa10.79□□□□□ -0.68
VPS53-220ENST00000576149 CEP89Q96ST8 783 aa10.79□□□□□ -0.68
VPS53-220ENST00000576149 HAPLN2Q9GZV7 340 aa10.79□□□□□ -0.68
VPS53-220ENST00000576149 GGA3Q9NZ52 723 aa10.79□□□□□ -0.68
VPS53-220ENST00000576149 ATP8A1Q9Y2Q0 1164 aa10.79□□□□□ -0.68
VPS53-220ENST00000576149 SNX24Q9Y343 169 aa10.79□□□□□ -0.68
VPS53-220ENST00000576149 PCDHB2Q9Y5E7 798 aa10.79□□□□□ -0.68
VPS53-220ENST00000576149 PPP2R3BQ9Y5P8 575 aa10.79□□□□□ -0.68
VPS53-220ENST00000576149 IGKV6D-21A0A0A0MT36 114 aa10.79□□□□□ -0.68
VPS53-220ENST00000576149 TCRBV7S2A1N4TA0A589 114 aa10.79□□□□□ -0.68
VPS53-220ENST00000576149 CALCAP01258 141 aa10.79□□□□□ -0.68
VPS53-220ENST00000576149 HLA-DRAP01903 254 aa10.79□□□□□ -0.68
VPS53-220ENST00000576149 NAMPTP43490 491 aa10.79□□□□□ -0.68
VPS53-220ENST00000576149 PLTPP55058 493 aa10.79□□□□□ -0.68
VPS53-220ENST00000576149 CNTN2Q02246 1040 aa10.79□□□□□ -0.68
VPS53-220ENST00000576149 SKIDA1Q1XH10 827 aa10.79□□□□□ -0.68
VPS53-220ENST00000576149 WDR44Q5JSH3 913 aa10.79□□□□□ -0.68
VPS53-220ENST00000576149 TDRD10Q5VZ19 366 aaKnown RBP10.79□□□□□ -0.68
VPS53-220ENST00000576149 LMBRD2Q68DH5 695 aaPredicted RBP10.79□□□□□ -0.68
VPS53-220ENST00000576149 MCOLN2Q8IZK6 566 aa10.79□□□□□ -0.68
VPS53-220ENST00000576149 DDX55Q8NHQ9 600 aaKnown RBP eCLIP10.79□□□□□ -0.68
VPS53-220ENST00000576149 NIFKQ9BYG3 293 aaKnown RBP10.79□□□□□ -0.68
VPS53-220ENST00000576149 CENPHQ9H3R5 247 aa10.79□□□□□ -0.68
VPS53-220ENST00000576149 AVENQ9NQS1 362 aaPredicted RBP10.79□□□□□ -0.68
VPS53-220ENST00000576149 GRHL1Q9NZI5 618 aa10.79□□□□□ -0.68
VPS53-220ENST00000576149 MTUS1Q9ULD2 1270 aa10.79□□□□□ -0.68
VPS53-220ENST00000576149 LOC285556D6RIA3 1793 aa10.79□□□□□ -0.68
VPS53-220ENST00000576149 LCTP09848 1927 aa10.79□□□□□ -0.68
VPS53-220ENST00000576149 K7ERI5 159 aa10.78□□□□□ -0.68
VPS53-220ENST00000576149 RARAP10276 462 aa10.78□□□□□ -0.68
VPS53-220ENST00000576149 GBP1P32455 592 aa10.78□□□□□ -0.68
VPS53-220ENST00000576149 COILP38432 576 aaPredicted RBP10.78□□□□□ -0.68
VPS53-220ENST00000576149 ACOT2P49753 483 aa10.78□□□□□ -0.68
VPS53-220ENST00000576149 EIF3BP55884 814 aaKnown RBP10.78□□□□□ -0.68
VPS53-220ENST00000576149 BPIFB4P59827 614 aa10.78□□□□□ -0.68
VPS53-220ENST00000576149 SLFN12LQ6IEE8 588 aa10.78□□□□□ -0.68
VPS53-220ENST00000576149 ANKRD35Q8N283 1001 aa10.78□□□□□ -0.68
VPS53-220ENST00000576149 FBXO25Q8TCJ0 367 aa10.78□□□□□ -0.68
VPS53-220ENST00000576149 RUNDC3BQ96NL0 473 aa10.78□□□□□ -0.68
VPS53-220ENST00000576149 EPN3Q9H201 632 aa10.78□□□□□ -0.68
VPS53-220ENST00000576149 EPB41L4BQ9H329 900 aa10.78□□□□□ -0.68
VPS53-220ENST00000576149 RABEP2Q9H5N1 569 aa10.78□□□□□ -0.68
VPS53-220ENST00000576149 GPRC5DQ9NZD1 345 aa10.78□□□□□ -0.68
VPS53-220ENST00000576149 CD2APQ9Y5K6 639 aa10.78□□□□□ -0.68
VPS53-220ENST00000576149 PTPRJQ12913 1337 aa10.78□□□□□ -0.68
VPS53-220ENST00000576149 LRRIQ4A6NIV6 560 aa10.78□□□□□ -0.68
VPS53-220ENST00000576149 SRRM3A6NNA2 597 aaPredicted RBP10.78□□□□□ -0.68
VPS53-220ENST00000576149 EBAG9O00559 213 aa10.78□□□□□ -0.68
VPS53-220ENST00000576149 TRIM66O15016 1216 aa10.78□□□□□ -0.68
VPS53-220ENST00000576149 VNN1O95497 513 aa10.78□□□□□ -0.68
VPS53-220ENST00000576149 LDHAP00338 332 aaKnown RBP10.78□□□□□ -0.68
VPS53-220ENST00000576149 CYP1A1P04798 512 aaPredicted RBP10.78□□□□□ -0.68
VPS53-220ENST00000576149 MYBL1P10243 752 aa10.78□□□□□ -0.68
VPS53-220ENST00000576149 ACO1P21399 889 aaKnown RBP10.78□□□□□ -0.68
VPS53-220ENST00000576149 MAPK4P31152 587 aa10.78□□□□□ -0.68
VPS53-220ENST00000576149 HPDP32754 393 aaPredicted RBP10.78□□□□□ -0.68
VPS53-220ENST00000576149 PIK3CAP42336 1068 aa10.78□□□□□ -0.68
VPS53-220ENST00000576149 RPL21P46778 160 aaKnown RBP10.78□□□□□ -0.68
VPS53-220ENST00000576149 ALDH5A1P51649 535 aaPredicted RBP10.78□□□□□ -0.68
VPS53-220ENST00000576149 PMS2P54278 862 aa10.78□□□□□ -0.68
VPS53-220ENST00000576149 IRX5P78411 483 aaPredicted RBP10.78□□□□□ -0.68
VPS53-220ENST00000576149 LBX2Q6XYB7 198 aa10.78□□□□□ -0.68
VPS53-220ENST00000576149 SEPT14Q6ZU15 432 aa10.78□□□□□ -0.68
VPS53-220ENST00000576149 C12orf50Q8NA57 414 aaPredicted RBP10.78□□□□□ -0.68
VPS53-220ENST00000576149 DEPTORQ8TB45 409 aa10.78□□□□□ -0.68
VPS53-220ENST00000576149 SLC7A3Q8WY07 619 aa10.78□□□□□ -0.68
VPS53-220ENST00000576149 TRIM11Q96F44 468 aa10.78□□□□□ -0.68
VPS53-220ENST00000576149 ZBTB45Q96K62 511 aaPredicted RBP10.78□□□□□ -0.68
VPS53-220ENST00000576149 PARP2Q9UGN5 583 aa10.78□□□□□ -0.68
VPS53-220ENST00000576149 ANAPC7Q9UJX3 599 aa10.78□□□□□ -0.68
VPS53-220ENST00000576149 ZNFX1Q9P2E3 1918 aaKnown RBP10.77□□□□□ -0.68
VPS53-220ENST00000576149 USP2O75604 605 aaPredicted RBP10.77□□□□□ -0.68
VPS53-220ENST00000576149 NUDT17P0C025 328 aa10.77□□□□□ -0.68
VPS53-220ENST00000576149 FNTAP49354 379 aa10.77□□□□□ -0.68
VPS53-220ENST00000576149 HIRAP54198 1017 aaPredicted RBP10.77□□□□□ -0.68
VPS53-220ENST00000576149 CORO7P57737 925 aa10.77□□□□□ -0.68
VPS53-220ENST00000576149 CENPCQ03188 943 aa10.77□□□□□ -0.68
VPS53-220ENST00000576149 SPOPLQ6IQ16 392 aa10.77□□□□□ -0.68
VPS53-220ENST00000576149 NME8Q8N427 588 aa10.77□□□□□ -0.68
VPS53-220ENST00000576149 CPA5Q8WXQ8 436 aa10.77□□□□□ -0.68
VPS53-220ENST00000576149 TARS2Q9BW92 718 aaKnown RBP10.77□□□□□ -0.68
VPS53-220ENST00000576149 PLVAPQ9BX97 442 aa10.77□□□□□ -0.68
VPS53-220ENST00000576149 TSPYL1Q9H0U9 437 aa10.77□□□□□ -0.68
VPS53-220ENST00000576149 PABPC3Q9H361 631 aaKnown RBP10.77□□□□□ -0.68
VPS53-220ENST00000576149 TMEM134Q9H6X4 195 aa10.77□□□□□ -0.68
VPS53-220ENST00000576149 LRRC19Q9H756 370 aa10.77□□□□□ -0.68
VPS53-220ENST00000576149 RBAKQ9NYW8 714 aaPredicted RBP10.77□□□□□ -0.68
VPS53-220ENST00000576149 SLC12A6Q9UHW9 1150 aa10.77□□□□□ -0.68
VPS53-220ENST00000576149 FEZ2Q9UHY8 353 aaPredicted RBP10.77□□□□□ -0.68
VPS53-220ENST00000576149 MROH7Q68CQ1 1323 aa10.77□□□□□ -0.69
VPS53-220ENST00000576149 A0A0B4J269 797 aa10.77□□□□□ -0.69
VPS53-220ENST00000576149 GSTTP1A0A1W2PQM5 241 aa10.77□□□□□ -0.69
VPS53-220ENST00000576149 NDUFAB1O14561 156 aa10.77□□□□□ -0.69
VPS53-220ENST00000576149 FSCN2O14926 492 aa10.77□□□□□ -0.69
VPS53-220ENST00000576149 UBA1P22314 1058 aaKnown RBP10.77□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms