RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 ZNF609O15014 1411 aa7.01□□□□□ -1.29
VPS53-212ENST00000572259 MYH13Q9UKX3 1938 aa7□□□□□ -1.29
VPS53-212ENST00000572259 SNAP23O00161 211 aa7□□□□□ -1.29
VPS53-212ENST00000572259 SNX2O60749 519 aa7□□□□□ -1.29
VPS53-212ENST00000572259 DNAJC8O75937 253 aaPredicted RBP7□□□□□ -1.29
VPS53-212ENST00000572259 FUCA1P04066 466 aa7□□□□□ -1.29
VPS53-212ENST00000572259 TNFAIP3P21580 790 aa7□□□□□ -1.29
VPS53-212ENST00000572259 TRHRP34981 398 aaPredicted RBP7□□□□□ -1.29
VPS53-212ENST00000572259 NF2P35240 595 aa7□□□□□ -1.29
VPS53-212ENST00000572259 BCL6P41182 706 aa7□□□□□ -1.29
VPS53-212ENST00000572259 RBM5P52756 815 aaKnown RBP eCLIP7□□□□□ -1.29
VPS53-212ENST00000572259 CORO7P57737 925 aa7□□□□□ -1.29
VPS53-212ENST00000572259 FAM193AP78312 1265 aa7□□□□□ -1.29
VPS53-212ENST00000572259 MVPQ14764 893 aaKnown RBP7□□□□□ -1.29
VPS53-212ENST00000572259 DLGAP5Q15398 846 aa7□□□□□ -1.29
VPS53-212ENST00000572259 MFSD14BQ5SR56 506 aa7□□□□□ -1.29
VPS53-212ENST00000572259 CASC1Q6TDU7 716 aa7□□□□□ -1.29
VPS53-212ENST00000572259 CEP68Q76N32 757 aa7□□□□□ -1.29
VPS53-212ENST00000572259 ATG9AQ7Z3C6 839 aa7□□□□□ -1.29
VPS53-212ENST00000572259 RPAP2Q8IXW5 612 aaPredicted RBP7□□□□□ -1.29
VPS53-212ENST00000572259 LZTR1Q8N653 840 aa7□□□□□ -1.29
VPS53-212ENST00000572259 GSTCDQ8NEC7 633 aa7□□□□□ -1.29
VPS53-212ENST00000572259 ABHD4Q8TB40 342 aa7□□□□□ -1.29
VPS53-212ENST00000572259 PANK1Q8TE04 598 aa7□□□□□ -1.29
VPS53-212ENST00000572259 ASIC4Q96FT7 647 aa7□□□□□ -1.29
VPS53-212ENST00000572259 TMEM169Q96HH4 297 aa7□□□□□ -1.29
VPS53-212ENST00000572259 C19orf73Q9NVV2 129 aa7□□□□□ -1.29
VPS53-212ENST00000572259 CLDND1Q9NY35 253 aa7□□□□□ -1.29
VPS53-212ENST00000572259 MARCH2Q9P0N8 246 aa7□□□□□ -1.29
VPS53-212ENST00000572259 PA2G4Q9UQ80 394 aaKnown RBP7□□□□□ -1.29
VPS53-212ENST00000572259 TNNQ9UQP3 1299 aa7□□□□□ -1.29
VPS53-212ENST00000572259 RWDD3Q9Y3V2 267 aa7□□□□□ -1.29
VPS53-212ENST00000572259 A0A1B0GUL6 1792 aa7□□□□□ -1.29
VPS53-212ENST00000572259 MAST3O60307 1309 aa7□□□□□ -1.29
VPS53-212ENST00000572259 FAM205AQ6ZU69 1335 aa7□□□□□ -1.29
VPS53-212ENST00000572259 PASKQ96RG2 1323 aa7□□□□□ -1.29
VPS53-212ENST00000572259 hCG_1984214I3L0E3 225 aa6.99□□□□□ -1.29
VPS53-212ENST00000572259 K7ESF4 209 aa6.99□□□□□ -1.29
VPS53-212ENST00000572259 OPA1O60313 960 aa6.99□□□□□ -1.29
VPS53-212ENST00000572259 PSPNO60542 156 aa6.99□□□□□ -1.29
VPS53-212ENST00000572259 SURF6O75683 361 aaKnown RBP6.99□□□□□ -1.29
VPS53-212ENST00000572259 AGR2O95994 175 aa6.99□□□□□ -1.29
VPS53-212ENST00000572259 BPIP17213 487 aa6.99□□□□□ -1.29
VPS53-212ENST00000572259 FGFR2P21802 821 aa6.99□□□□□ -1.29
VPS53-212ENST00000572259 LPOP22079 712 aaPredicted RBP6.99□□□□□ -1.29
VPS53-212ENST00000572259 CCND1P24385 295 aa6.99□□□□□ -1.29
VPS53-212ENST00000572259 KLRK1P26718 216 aa6.99□□□□□ -1.29
VPS53-212ENST00000572259 FLT3P36888 993 aa6.99□□□□□ -1.29
VPS53-212ENST00000572259 ARL4AP40617 200 aa6.99□□□□□ -1.29
VPS53-212ENST00000572259 ECE1P42892 770 aa6.99□□□□□ -1.29
VPS53-212ENST00000572259 NEK4P51957 841 aa6.99□□□□□ -1.29
VPS53-212ENST00000572259 CYP4F8P98187 520 aa6.99□□□□□ -1.29
VPS53-212ENST00000572259 PAK1Q13153 545 aa6.99□□□□□ -1.29
VPS53-212ENST00000572259 GALEQ14376 348 aa6.99□□□□□ -1.29
VPS53-212ENST00000572259 SNX17Q15036 470 aa6.99□□□□□ -1.29
VPS53-212ENST00000572259 PCBP1Q15365 356 aaKnown RBP eCLIP6.99□□□□□ -1.29
VPS53-212ENST00000572259 ABCB5Q2M3G0 1257 aa6.99□□□□□ -1.29
VPS53-212ENST00000572259 DEFB115Q30KQ5 88 aa6.99□□□□□ -1.29
VPS53-212ENST00000572259 CCDC92Q53HC0 331 aaPredicted RBP6.99□□□□□ -1.29
VPS53-212ENST00000572259 WDR45BQ5MNZ6 344 aa6.99□□□□□ -1.29
VPS53-212ENST00000572259 MYLK4Q86YV6 388 aaPredicted RBP6.99□□□□□ -1.29
VPS53-212ENST00000572259 ERC1Q8IUD2 1116 aa6.99□□□□□ -1.29
VPS53-212ENST00000572259 APOBEC3FQ8IUX4 373 aaKnown RBP6.99□□□□□ -1.29
VPS53-212ENST00000572259 ZC3H7AQ8IWR0 971 aaKnown RBP6.99□□□□□ -1.29
VPS53-212ENST00000572259 SIRT2Q8IXJ6 389 aa6.99□□□□□ -1.29
VPS53-212ENST00000572259 CPA6Q8N4T0 437 aa6.99□□□□□ -1.29
VPS53-212ENST00000572259 ZGPATQ8N5A5 531 aaKnown RBP6.99□□□□□ -1.29
VPS53-212ENST00000572259 VGLL2Q8N8G2 317 aa6.99□□□□□ -1.29
VPS53-212ENST00000572259 C2orf69Q8N8R5 385 aa6.99□□□□□ -1.29
VPS53-212ENST00000572259 SPATA5Q8NB90 893 aa6.99□□□□□ -1.29
VPS53-212ENST00000572259 GIMAP8Q8ND71 665 aaPredicted RBP6.99□□□□□ -1.29
VPS53-212ENST00000572259 ACRBPQ8NEB7 543 aa6.99□□□□□ -1.29
VPS53-212ENST00000572259 SSH3Q8TE77 659 aa6.99□□□□□ -1.29
VPS53-212ENST00000572259 POF1BQ8WVV4 589 aa6.99□□□□□ -1.29
VPS53-212ENST00000572259 TRIM39Q9HCM9 518 aa6.99□□□□□ -1.29
VPS53-212ENST00000572259 PDLIM7Q9NR12 457 aa6.99□□□□□ -1.29
VPS53-212ENST00000572259 ACSL6Q9UKU0 697 aa6.99□□□□□ -1.29
VPS53-212ENST00000572259 DENND2AQ9ULE3 1009 aa6.99□□□□□ -1.29
VPS53-212ENST00000572259 ZBTB21Q9ULJ3 1066 aa6.99□□□□□ -1.29
VPS53-212ENST00000572259 ABT1Q9ULW3 272 aaKnown RBP6.99□□□□□ -1.29
VPS53-212ENST00000572259 COA3Q9Y2R0 106 aaPredicted RBP6.99□□□□□ -1.29
VPS53-212ENST00000572259 AK9Q5TCS8 1911 aa6.99□□□□□ -1.29
VPS53-212ENST00000572259 IRS2Q9Y4H2 1338 aa6.99□□□□□ -1.29
VPS53-212ENST00000572259 PNMA6EA0A0J9YXQ4 647 aa6.98□□□□□ -1.29
VPS53-212ENST00000572259 C22orf46C9J442 243 aa6.98□□□□□ -1.29
VPS53-212ENST00000572259 F8W031 263 aaPredicted RBP6.98□□□□□ -1.29
VPS53-212ENST00000572259 J3KRW8 73 aa6.98□□□□□ -1.29
VPS53-212ENST00000572259 WNT10BO00744 389 aa6.98□□□□□ -1.29
VPS53-212ENST00000572259 CELF2O95319 508 aaKnown RBP6.98□□□□□ -1.29
VPS53-212ENST00000572259 ASLP04424 464 aa6.98□□□□□ -1.29
VPS53-212ENST00000572259 VCAM1P19320 739 aa6.98□□□□□ -1.29
VPS53-212ENST00000572259 TACR1P25103 407 aa6.98□□□□□ -1.29
VPS53-212ENST00000572259 RECQLP46063 649 aaPredicted RBP6.98□□□□□ -1.29
VPS53-212ENST00000572259 RXRGP48443 463 aa6.98□□□□□ -1.29
VPS53-212ENST00000572259 TIMM10P62072 90 aa6.98□□□□□ -1.29
VPS53-212ENST00000572259 TNFAIP1Q13829 316 aa6.98□□□□□ -1.29
VPS53-212ENST00000572259 SEPT7Q16181 437 aaKnown RBP6.98□□□□□ -1.29
VPS53-212ENST00000572259 PDCD2Q16342 344 aaPredicted RBP6.98□□□□□ -1.29
VPS53-212ENST00000572259 CCDC158Q5M9N0 1113 aa6.98□□□□□ -1.29
VPS53-212ENST00000572259 BICRALQ6AI39 1079 aa6.98□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms