RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 SSR1P43307 286 aaKnown RBP11.46□□□□□ -0.57
CCDC40-207ENST00000572253 RARRES1P49788 294 aa11.46□□□□□ -0.57
CCDC40-207ENST00000572253 C1orf220Q5T0J3 134 aa11.46□□□□□ -0.57
CCDC40-207ENST00000572253 CHADLQ6NUI6 762 aa11.46□□□□□ -0.57
CCDC40-207ENST00000572253 RANBP17Q9H2T7 1088 aaKnown RBP11.46□□□□□ -0.57
CCDC40-207ENST00000572253 ST6GALNAC4Q9H4F1 302 aa11.46□□□□□ -0.57
CCDC40-207ENST00000572253 TDRD3Q9H7E2 651 aaKnown RBP11.46□□□□□ -0.57
CCDC40-207ENST00000572253 ACP6Q9NPH0 428 aa11.46□□□□□ -0.57
CCDC40-207ENST00000572253 AVENQ9NQS1 362 aaPredicted RBP11.46□□□□□ -0.57
CCDC40-207ENST00000572253 LGALS13Q9UHV8 139 aa11.46□□□□□ -0.57
CCDC40-207ENST00000572253 ZHX2Q9Y6X8 837 aa11.46□□□□□ -0.57
CCDC40-207ENST00000572253 ATP5HO75947 161 aa11.46□□□□□ -0.57
CCDC40-207ENST00000572253 ADRB2P07550 413 aa11.46□□□□□ -0.57
CCDC40-207ENST00000572253 PDE6BP35913 854 aa11.46□□□□□ -0.57
CCDC40-207ENST00000572253 MSH2P43246 934 aa11.46□□□□□ -0.57
CCDC40-207ENST00000572253 GPC3P51654 580 aa11.46□□□□□ -0.57
CCDC40-207ENST00000572253 BPIFB4P59827 614 aa11.46□□□□□ -0.57
CCDC40-207ENST00000572253 LMNB2Q03252 620 aa11.46□□□□□ -0.57
CCDC40-207ENST00000572253 MKRN4PQ13434 485 aaPredicted RBP11.46□□□□□ -0.57
CCDC40-207ENST00000572253 ACCSLQ4AC99 568 aa11.46□□□□□ -0.57
CCDC40-207ENST00000572253 FAM102BQ5T8I3 360 aa11.46□□□□□ -0.57
CCDC40-207ENST00000572253 RNF43Q68DV7 783 aa11.46□□□□□ -0.57
CCDC40-207ENST00000572253 VSIG1Q86XK7 387 aa11.46□□□□□ -0.57
CCDC40-207ENST00000572253 CBWD2Q8IUF1 395 aa11.46□□□□□ -0.57
CCDC40-207ENST00000572253 KIF2BQ8N4N8 673 aa11.46□□□□□ -0.57
CCDC40-207ENST00000572253 THOC1Q96FV9 657 aaKnown RBP11.46□□□□□ -0.57
CCDC40-207ENST00000572253 CFAP57Q96MR6 1250 aa11.46□□□□□ -0.57
CCDC40-207ENST00000572253 C1orf112Q9NSG2 853 aa11.46□□□□□ -0.57
CCDC40-207ENST00000572253 RAB20Q9NX57 234 aa11.46□□□□□ -0.57
CCDC40-207ENST00000572253 CTNNAL1Q9UBT7 734 aa11.46□□□□□ -0.57
CCDC40-207ENST00000572253 TMX2Q9Y320 296 aa11.46□□□□□ -0.57
CCDC40-207ENST00000572253 SKIV2L2P42285 1042 aaKnown RBP11.46□□□□□ -0.58
CCDC40-207ENST00000572253 ECE1P42892 770 aa11.46□□□□□ -0.58
CCDC40-207ENST00000572253 NSFP46459 744 aaKnown RBP11.46□□□□□ -0.58
CCDC40-207ENST00000572253 TMED2Q15363 201 aa11.46□□□□□ -0.58
CCDC40-207ENST00000572253 LDHDQ86WU2 507 aa11.46□□□□□ -0.58
CCDC40-207ENST00000572253 GADD45GIP1Q8TAE8 222 aaPredicted RBP11.46□□□□□ -0.58
CCDC40-207ENST00000572253 L3MBTL1Q9Y468 752 aa11.46□□□□□ -0.58
CCDC40-207ENST00000572253 RASA4BC9J798 803 aa11.45□□□□□ -0.58
CCDC40-207ENST00000572253 RASA4O43374 803 aa11.45□□□□□ -0.58
CCDC40-207ENST00000572253 CREB1P16220 341 aa11.45□□□□□ -0.58
CCDC40-207ENST00000572253 MTFR1Q15390 333 aa11.45□□□□□ -0.58
CCDC40-207ENST00000572253 XKR9Q5GH70 373 aa11.45□□□□□ -0.58
CCDC40-207ENST00000572253 IZUMO3Q5VZ72 239 aa11.45□□□□□ -0.58
CCDC40-207ENST00000572253 B3GNT9Q6UX72 402 aa11.45□□□□□ -0.58
CCDC40-207ENST00000572253 PLEKHO2Q8TD55 490 aa11.45□□□□□ -0.58
CCDC40-207ENST00000572253 TMC2Q8TDI7 906 aa11.45□□□□□ -0.58
CCDC40-207ENST00000572253 SAAL1Q96ER3 474 aa11.45□□□□□ -0.58
CCDC40-207ENST00000572253 KCNH7Q9NS40 1196 aa11.45□□□□□ -0.58
CCDC40-207ENST00000572253 NAALADL1Q9UQQ1 740 aa11.45□□□□□ -0.58
CCDC40-207ENST00000572253 ADGRA3Q8IWK6 1321 aa11.45□□□□□ -0.58
CCDC40-207ENST00000572253 FAM47DPA6NHR8 397 aa11.45□□□□□ -0.58
CCDC40-207ENST00000572253 HMGB2P26583 209 aaKnown RBP11.45□□□□□ -0.58
CCDC40-207ENST00000572253 CALRP27797 417 aaKnown RBP11.45□□□□□ -0.58
CCDC40-207ENST00000572253 GTF2H1P32780 548 aa11.45□□□□□ -0.58
CCDC40-207ENST00000572253 DMP1Q13316 513 aaPredicted RBP11.45□□□□□ -0.58
CCDC40-207ENST00000572253 ZNF568Q3ZCX4 644 aa11.45□□□□□ -0.58
CCDC40-207ENST00000572253 DACT2Q5SW24 774 aa11.45□□□□□ -0.58
CCDC40-207ENST00000572253 ZFYVE27Q5T4F4 411 aa11.45□□□□□ -0.58
CCDC40-207ENST00000572253 C7orf43Q8WVR3 580 aa11.45□□□□□ -0.58
CCDC40-207ENST00000572253 SEMA4DQ92854 862 aa11.45□□□□□ -0.58
CCDC40-207ENST00000572253 ZNF622Q969S3 477 aaKnown RBP eCLIP11.45□□□□□ -0.58
CCDC40-207ENST00000572253 ARHGEF3Q9NR81 526 aa11.45□□□□□ -0.58
CCDC40-207ENST00000572253 HGSO14964 777 aaPredicted RBP11.45□□□□□ -0.58
CCDC40-207ENST00000572253 ALADP13716 330 aa11.45□□□□□ -0.58
CCDC40-207ENST00000572253 YWHABP31946 246 aaKnown RBP11.45□□□□□ -0.58
CCDC40-207ENST00000572253 WDR44Q5JSH3 913 aa11.45□□□□□ -0.58
CCDC40-207ENST00000572253 SLC27A3Q5K4L6 730 aa11.45□□□□□ -0.58
CCDC40-207ENST00000572253 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.45□□□□□ -0.58
CCDC40-207ENST00000572253 NIPA1Q7RTP0 329 aa11.45□□□□□ -0.58
CCDC40-207ENST00000572253 HELQQ8TDG4 1101 aa11.45□□□□□ -0.58
CCDC40-207ENST00000572253 ACER1Q8TDN7 264 aa11.45□□□□□ -0.58
CCDC40-207ENST00000572253 PARD3BQ8TEW8 1205 aa11.45□□□□□ -0.58
CCDC40-207ENST00000572253 COQ4Q9Y3A0 265 aa11.45□□□□□ -0.58
CCDC40-207ENST00000572253 DIAPH2O60879 1101 aa11.44□□□□□ -0.58
CCDC40-207ENST00000572253 CCDC15Q0P6D6 951 aa11.44□□□□□ -0.58
CCDC40-207ENST00000572253 CCNG2Q16589 344 aa11.44□□□□□ -0.58
CCDC40-207ENST00000572253 TRMT1LQ7Z2T5 733 aaKnown RBP11.44□□□□□ -0.58
CCDC40-207ENST00000572253 ZNF677Q86XU0 584 aa11.44□□□□□ -0.58
CCDC40-207ENST00000572253 RHOT1Q8IXI2 618 aa11.44□□□□□ -0.58
CCDC40-207ENST00000572253 MCOLN2Q8IZK6 566 aa11.44□□□□□ -0.58
CCDC40-207ENST00000572253 MASTLQ96GX5 879 aa11.44□□□□□ -0.58
CCDC40-207ENST00000572253 L3MBTL3Q96JM7 780 aaPredicted RBP11.44□□□□□ -0.58
CCDC40-207ENST00000572253 HEMGNQ9BXL5 484 aa11.44□□□□□ -0.58
CCDC40-207ENST00000572253 ETNK1Q9HBU6 452 aa11.44□□□□□ -0.58
CCDC40-207ENST00000572253 FEM1BQ9UK73 627 aa11.44□□□□□ -0.58
CCDC40-207ENST00000572253 ATRNL1Q5VV63 1379 aa11.44□□□□□ -0.58
CCDC40-207ENST00000572253 LRRC37AA6NMS7 1700 aa11.44□□□□□ -0.58
CCDC40-207ENST00000572253 EXOC1LA0A1B0GW35 172 aa11.44□□□□□ -0.58
CCDC40-207ENST00000572253 ECE2O60344 883 aa11.44□□□□□ -0.58
CCDC40-207ENST00000572253 KRT16P08779 473 aa11.44□□□□□ -0.58
CCDC40-207ENST00000572253 JAG1P78504 1218 aa11.44□□□□□ -0.58
CCDC40-207ENST00000572253 ZYXQ15942 572 aaKnown RBP11.44□□□□□ -0.58
CCDC40-207ENST00000572253 CYP4F22Q6NT55 531 aa11.44□□□□□ -0.58
CCDC40-207ENST00000572253 DHX37Q8IY37 1157 aaKnown RBP11.44□□□□□ -0.58
CCDC40-207ENST00000572253 FITM2Q8N6M3 262 aa11.44□□□□□ -0.58
CCDC40-207ENST00000572253 MAB21L3Q8N8X9 362 aa11.44□□□□□ -0.58
CCDC40-207ENST00000572253 TAS1R2Q8TE23 839 aa11.44□□□□□ -0.58
CCDC40-207ENST00000572253 C9orf72Q96LT7 481 aa11.44□□□□□ -0.58
CCDC40-207ENST00000572253 TTC25Q96NG3 672 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms