RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 MTRQ99707 1265 aa12.28□□□□□ -0.44
VPS53-207ENST00000570510 C22orf23Q9BZE7 217 aa12.28□□□□□ -0.44
VPS53-207ENST00000570510 RXFP3Q9NSD7 469 aa12.28□□□□□ -0.44
VPS53-207ENST00000570510 RBM12Q9NTZ6 932 aaKnown RBP12.28□□□□□ -0.44
VPS53-207ENST00000570510 PPP4R2Q9NY27 417 aa12.28□□□□□ -0.44
VPS53-207ENST00000570510 BRPF3Q9ULD4 1205 aa12.28□□□□□ -0.44
VPS53-207ENST00000570510 FRYQ5TBA9 3013 aa12.28□□□□□ -0.44
VPS53-207ENST00000570510 DOCK6Q96HP0 2047 aa12.27□□□□□ -0.44
VPS53-207ENST00000570510 K7ESF4 209 aa12.27□□□□□ -0.45
VPS53-207ENST00000570510 ADAMTS3O15072 1205 aa12.27□□□□□ -0.45
VPS53-207ENST00000570510 TRAPPC3O43617 180 aa12.27□□□□□ -0.45
VPS53-207ENST00000570510 EPN2O95208 641 aa12.27□□□□□ -0.45
VPS53-207ENST00000570510 PAPSS2O95340 614 aaPredicted RBP12.27□□□□□ -0.45
VPS53-207ENST00000570510 P4HBP07237 508 aaKnown RBP12.27□□□□□ -0.45
VPS53-207ENST00000570510 ARF4P18085 180 aaPredicted RBP12.27□□□□□ -0.45
VPS53-207ENST00000570510 SPINK2P20155 84 aa12.27□□□□□ -0.45
VPS53-207ENST00000570510 CDC27P30260 824 aa12.27□□□□□ -0.45
VPS53-207ENST00000570510 ADD1P35611 737 aaKnown RBP12.27□□□□□ -0.45
VPS53-207ENST00000570510 MPLP40238 635 aa12.27□□□□□ -0.45
VPS53-207ENST00000570510 ARPP19P56211 112 aa12.27□□□□□ -0.45
VPS53-207ENST00000570510 NLRP5P59047 1200 aa12.27□□□□□ -0.45
VPS53-207ENST00000570510 SPIRE1Q08AE8 756 aa12.27□□□□□ -0.45
VPS53-207ENST00000570510 GAS6Q14393 721 aa12.27□□□□□ -0.45
VPS53-207ENST00000570510 Q4G0T1 1027 aa12.27□□□□□ -0.45
VPS53-207ENST00000570510 VITQ6UXI7 678 aa12.27□□□□□ -0.45
VPS53-207ENST00000570510 ANKS3Q6ZW76 656 aa12.27□□□□□ -0.45
VPS53-207ENST00000570510 CDR2LQ86X02 465 aaPredicted RBP12.27□□□□□ -0.45
VPS53-207ENST00000570510 MAP4K3Q8IVH8 894 aa12.27□□□□□ -0.45
VPS53-207ENST00000570510 ZNF579Q8NAF0 562 aaKnown RBP12.27□□□□□ -0.45
VPS53-207ENST00000570510 GSTCDQ8NEC7 633 aa12.27□□□□□ -0.45
VPS53-207ENST00000570510 GAB3Q8WWW8 586 aa12.27□□□□□ -0.45
VPS53-207ENST00000570510 ZNF512Q96ME7 567 aaPredicted RBP12.27□□□□□ -0.45
VPS53-207ENST00000570510 TCEANC2Q96MN5 208 aa12.27□□□□□ -0.45
VPS53-207ENST00000570510 ASB16Q96NS5 453 aa12.27□□□□□ -0.45
VPS53-207ENST00000570510 C8orf33Q9H7E9 229 aaPredicted RBP12.27□□□□□ -0.45
VPS53-207ENST00000570510 CYP4F11Q9HBI6 524 aa12.27□□□□□ -0.45
VPS53-207ENST00000570510 AVENQ9NQS1 362 aaPredicted RBP12.27□□□□□ -0.45
VPS53-207ENST00000570510 VPS45Q9NRW7 570 aa12.27□□□□□ -0.45
VPS53-207ENST00000570510 PCDHGA5Q9Y5G8 931 aa12.27□□□□□ -0.45
VPS53-207ENST00000570510 SLC38A8A6NNN8 435 aa12.26□□□□□ -0.45
VPS53-207ENST00000570510 B3GAT3O94766 335 aa12.26□□□□□ -0.45
VPS53-207ENST00000570510 FCARP24071 287 aa12.26□□□□□ -0.45
VPS53-207ENST00000570510 YWHABP31946 246 aaKnown RBP12.26□□□□□ -0.45
VPS53-207ENST00000570510 VIPR2P41587 438 aa12.26□□□□□ -0.45
VPS53-207ENST00000570510 RBM25P49756 843 aaKnown RBP12.26□□□□□ -0.45
VPS53-207ENST00000570510 SH3PXD2AQ5TCZ1 1133 aa12.26□□□□□ -0.45
VPS53-207ENST00000570510 PPP4R3AQ6IN85 833 aa12.26□□□□□ -0.45
VPS53-207ENST00000570510 Q6ZS52 159 aa12.26□□□□□ -0.45
VPS53-207ENST00000570510 HAUS6Q7Z4H7 955 aa12.26□□□□□ -0.45
VPS53-207ENST00000570510 KBTBD6Q86V97 674 aa12.26□□□□□ -0.45
VPS53-207ENST00000570510 MFSD6LQ8IWD5 586 aa12.26□□□□□ -0.45
VPS53-207ENST00000570510 E2F7Q96AV8 911 aa12.26□□□□□ -0.45
VPS53-207ENST00000570510 TCEAL4Q96EI5 215 aa12.26□□□□□ -0.45
VPS53-207ENST00000570510 EDEM2Q9BV94 578 aa12.26□□□□□ -0.45
VPS53-207ENST00000570510 SMOC1Q9H4F8 434 aa12.26□□□□□ -0.45
VPS53-207ENST00000570510 ANO2Q9NQ90 1003 aa12.26□□□□□ -0.45
VPS53-207ENST00000570510 MTRRQ9UBK8 725 aa12.26□□□□□ -0.45
VPS53-207ENST00000570510 F5P12259 2224 aa12.26□□□□□ -0.45
VPS53-207ENST00000570510 TDRD15B5MCY1 1934 aaKnown RBP12.25□□□□□ -0.45
VPS53-207ENST00000570510 WDR27A2RRH5 827 aa12.25□□□□□ -0.45
VPS53-207ENST00000570510 C4orf47A7E2U8 309 aa12.25□□□□□ -0.45
VPS53-207ENST00000570510 DPYSL4O14531 572 aa12.25□□□□□ -0.45
VPS53-207ENST00000570510 PRPF3O43395 683 aaKnown RBP12.25□□□□□ -0.45
VPS53-207ENST00000570510 MICAL2O94851 1124 aa12.25□□□□□ -0.45
VPS53-207ENST00000570510 TDP2O95551 362 aa12.25□□□□□ -0.45
VPS53-207ENST00000570510 MYL4P12829 197 aa12.25□□□□□ -0.45
VPS53-207ENST00000570510 HOXA6P31267 233 aa12.25□□□□□ -0.45
VPS53-207ENST00000570510 PXNP49023 591 aaPredicted RBP12.25□□□□□ -0.45
VPS53-207ENST00000570510 MLLT6P55198 1093 aaPredicted RBP12.25□□□□□ -0.45
VPS53-207ENST00000570510 ELF2Q15723 593 aa12.25□□□□□ -0.45
VPS53-207ENST00000570510 DHX32Q7L7V1 743 aaKnown RBP12.25□□□□□ -0.45
VPS53-207ENST00000570510 ZNF461Q8TAF7 563 aa12.25□□□□□ -0.45
VPS53-207ENST00000570510 ZSCAN18Q8TBC5 510 aaPredicted RBP12.25□□□□□ -0.45
VPS53-207ENST00000570510 SCNM1Q9BWG6 230 aa12.25□□□□□ -0.45
VPS53-207ENST00000570510 DDX25Q9UHL0 483 aaKnown RBP12.25□□□□□ -0.45
VPS53-207ENST00000570510 SLC8A2Q9UPR5 921 aa12.25□□□□□ -0.45
VPS53-207ENST00000570510 ZMYM2Q9UBW7 1377 aa12.25□□□□□ -0.45
VPS53-207ENST00000570510 ZFYVE26Q68DK2 2539 aa12.25□□□□□ -0.45
VPS53-207ENST00000570510 A0A1B0GUA9 196 aa12.24□□□□□ -0.45
VPS53-207ENST00000570510 ARHGEF37A1IGU5 675 aa12.24□□□□□ -0.45
VPS53-207ENST00000570510 EIF4E1BA6NMX2 242 aaKnown RBP12.24□□□□□ -0.45
VPS53-207ENST00000570510 HEPACAM2A8MVW5 462 aa12.24□□□□□ -0.45
VPS53-207ENST00000570510 GIPC1O14908 333 aa12.24□□□□□ -0.45
VPS53-207ENST00000570510 B4GALT5O43286 388 aa12.24□□□□□ -0.45
VPS53-207ENST00000570510 RAP1GAPP47736 663 aa12.24□□□□□ -0.45
VPS53-207ENST00000570510 RCAN1P53805 252 aa12.24□□□□□ -0.45
VPS53-207ENST00000570510 CREB5Q02930 508 aa12.24□□□□□ -0.45
VPS53-207ENST00000570510 MBTD1Q05BQ5 628 aa12.24□□□□□ -0.45
VPS53-207ENST00000570510 POU5F1BQ06416 359 aa12.24□□□□□ -0.45
VPS53-207ENST00000570510 PRSS36Q5K4E3 855 aa12.24□□□□□ -0.45
VPS53-207ENST00000570510 RALGPS2Q86X27 583 aaPredicted RBP12.24□□□□□ -0.45
VPS53-207ENST00000570510 SYNPOQ8N3V7 929 aa12.24□□□□□ -0.45
VPS53-207ENST00000570510 TTC8Q8TAM2 541 aa12.24□□□□□ -0.45
VPS53-207ENST00000570510 ZSWIM3Q96MP5 696 aa12.24□□□□□ -0.45
VPS53-207ENST00000570510 ADPGKQ9BRR6 497 aa12.24□□□□□ -0.45
VPS53-207ENST00000570510 LXNQ9BS40 222 aa12.24□□□□□ -0.45
VPS53-207ENST00000570510 ESYT1Q9BSJ8 1104 aa12.24□□□□□ -0.45
VPS53-207ENST00000570510 GPR88Q9GZN0 384 aa12.24□□□□□ -0.45
VPS53-207ENST00000570510 ASAH2Q9NR71 780 aa12.24□□□□□ -0.45
VPS53-207ENST00000570510 VPS54Q9P1Q0 977 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms