RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 PLA2G4FQ68DD2 849 aa20.11■□□□□ 0.81
CLK3-227ENST00000570296 TCEAL6Q6IPX3 200 aa20.11■□□□□ 0.81
CLK3-227ENST00000570296 PDZRN4Q6ZMN7 1036 aaPredicted RBP20.11■□□□□ 0.81
CLK3-227ENST00000570296 RNF149Q8NC42 400 aa20.11■□□□□ 0.81
CLK3-227ENST00000570296 CSGALNACT1Q8TDX6 532 aa20.11■□□□□ 0.81
CLK3-227ENST00000570296 TCEAL3Q969E4 200 aa20.11■□□□□ 0.81
CLK3-227ENST00000570296 NRG2O14511 850 aaPredicted RBP20.1■□□□□ 0.81
CLK3-227ENST00000570296 AKAP5P24588 427 aa20.1■□□□□ 0.81
CLK3-227ENST00000570296 PSMC5P62195 406 aa20.1■□□□□ 0.81
CLK3-227ENST00000570296 RTN1Q16799 776 aa20.1■□□□□ 0.81
CLK3-227ENST00000570296 APOA5Q6Q788 366 aa20.1■□□□□ 0.81
CLK3-227ENST00000570296 B3GNT9Q6UX72 402 aa20.1■□□□□ 0.81
CLK3-227ENST00000570296 MFSD6LQ8IWD5 586 aa20.1■□□□□ 0.81
CLK3-227ENST00000570296 CCDC12Q8WUD4 166 aaPredicted RBP20.1■□□□□ 0.81
CLK3-227ENST00000570296 TMEM143Q96AN5 459 aa20.1■□□□□ 0.81
CLK3-227ENST00000570296 CPB2Q96IY4 423 aa20.1■□□□□ 0.81
CLK3-227ENST00000570296 CCDC136Q96JN2 1154 aa20.1■□□□□ 0.81
CLK3-227ENST00000570296 DHX33Q9H6R0 707 aaKnown RBP20.1■□□□□ 0.81
CLK3-227ENST00000570296 TRPV4Q9HBA0 871 aa20.1■□□□□ 0.81
CLK3-227ENST00000570296 CACNG4Q9UBN1 327 aa20.1■□□□□ 0.81
CLK3-227ENST00000570296 ADAMTS3O15072 1205 aa20.09■□□□□ 0.81
CLK3-227ENST00000570296 LRG1P02750 347 aa20.09■□□□□ 0.81
CLK3-227ENST00000570296 RFC5P40937 340 aa20.09■□□□□ 0.81
CLK3-227ENST00000570296 PFKFB3Q16875 520 aaPredicted RBP20.09■□□□□ 0.81
CLK3-227ENST00000570296 WDR44Q5JSH3 913 aa20.09■□□□□ 0.81
CLK3-227ENST00000570296 TCP11Q8WWU5 503 aa20.09■□□□□ 0.81
CLK3-227ENST00000570296 TCEAL4Q96EI5 215 aa20.09■□□□□ 0.81
CLK3-227ENST00000570296 CORO1BQ9BR76 489 aa20.09■□□□□ 0.81
CLK3-227ENST00000570296 MSRB2Q9Y3D2 182 aa20.09■□□□□ 0.81
CLK3-227ENST00000570296 RBM8AQ9Y5S9 174 aaKnown RBP20.09■□□□□ 0.81
CLK3-227ENST00000570296 CDY1Q9Y6F8 540 aa20.09■□□□□ 0.81
CLK3-227ENST00000570296 CASTOR2A6NHX0 329 aa20.08■□□□□ 0.81
CLK3-227ENST00000570296 ZIC2O95409 532 aaPredicted RBP20.08■□□□□ 0.81
CLK3-227ENST00000570296 FGFR3P22607 806 aa20.08■□□□□ 0.81
CLK3-227ENST00000570296 GNA11P29992 359 aa20.08■□□□□ 0.81
CLK3-227ENST00000570296 HOXC13P31276 330 aa20.08■□□□□ 0.81
CLK3-227ENST00000570296 VIPR2P41587 438 aa20.08■□□□□ 0.81
CLK3-227ENST00000570296 KPNA1P52294 538 aaPredicted RBP20.08■□□□□ 0.81
CLK3-227ENST00000570296 NPEPPSP55786 919 aa20.08■□□□□ 0.81
CLK3-227ENST00000570296 PDZD4Q76G19 769 aaPredicted RBP20.08■□□□□ 0.81
CLK3-227ENST00000570296 FERMT3Q86UX7 667 aa20.08■□□□□ 0.81
CLK3-227ENST00000570296 GJA10Q969M2 543 aa20.08■□□□□ 0.81
CLK3-227ENST00000570296 E2F7Q96AV8 911 aa20.08■□□□□ 0.81
CLK3-227ENST00000570296 LRRC2Q9BYS8 371 aa20.08■□□□□ 0.81
CLK3-227ENST00000570296 KLK14Q9P0G3 267 aa20.08■□□□□ 0.81
CLK3-227ENST00000570296 ANKFY1Q9P2R3 1169 aa20.08■□□□□ 0.81
CLK3-227ENST00000570296 BACE2Q9Y5Z0 518 aa20.08■□□□□ 0.81
CLK3-227ENST00000570296 ASCC3Q8N3C0 2202 aaKnown RBP20.08■□□□□ 0.8
CLK3-227ENST00000570296 NUP205Q92621 2012 aa20.08■□□□□ 0.8
CLK3-227ENST00000570296 PCNX2A6NKB5 2137 aa20.08■□□□□ 0.8
CLK3-227ENST00000570296 MYBPHLA2RUH7 354 aa20.07■□□□□ 0.8
CLK3-227ENST00000570296 CHMLP26374 656 aa20.07■□□□□ 0.8
CLK3-227ENST00000570296 USP11P51784 963 aa20.07■□□□□ 0.8
CLK3-227ENST00000570296 PTENP60484 403 aa20.07■□□□□ 0.8
CLK3-227ENST00000570296 CCINQ13939 588 aa20.07■□□□□ 0.8
CLK3-227ENST00000570296 RALGPS2Q86X27 583 aaPredicted RBP20.07■□□□□ 0.8
CLK3-227ENST00000570296 CEP170P1Q96L14 293 aa20.07■□□□□ 0.8
CLK3-227ENST00000570296 PARP2Q9UGN5 583 aa20.07■□□□□ 0.8
CLK3-227ENST00000570296 CACNA1EQ15878 2313 aa20.07■□□□□ 0.8
CLK3-227ENST00000570296 SLC38A8A6NNN8 435 aa20.06■□□□□ 0.8
CLK3-227ENST00000570296 SPECC1L-ADORA2AF8WAN1 911 aa20.06■□□□□ 0.8
CLK3-227ENST00000570296 CHADO15335 359 aa20.06■□□□□ 0.8
CLK3-227ENST00000570296 SGSM2O43147 1006 aa20.06■□□□□ 0.8
CLK3-227ENST00000570296 EDIL3O43854 480 aa20.06■□□□□ 0.8
CLK3-227ENST00000570296 ARF4P18085 180 aaPredicted RBP20.06■□□□□ 0.8
CLK3-227ENST00000570296 CTHP32929 405 aa20.06■□□□□ 0.8
CLK3-227ENST00000570296 CCR2P41597 374 aa20.06■□□□□ 0.8
CLK3-227ENST00000570296 PLK5Q496M5 336 aa20.06■□□□□ 0.8
CLK3-227ENST00000570296 CYP4A22Q5TCH4 519 aa20.06■□□□□ 0.8
CLK3-227ENST00000570296 SLC27A1Q6PCB7 646 aa20.06■□□□□ 0.8
CLK3-227ENST00000570296 PDZD3Q86UT5 571 aa20.06■□□□□ 0.8
CLK3-227ENST00000570296 IFNLR1Q8IU57 520 aaPredicted RBP20.06■□□□□ 0.8
CLK3-227ENST00000570296 FAM200AQ8TCP9 573 aa20.06■□□□□ 0.8
CLK3-227ENST00000570296 BICD2Q8TD16 824 aa20.06■□□□□ 0.8
CLK3-227ENST00000570296 ZSWIM3Q96MP5 696 aa20.06■□□□□ 0.8
CLK3-227ENST00000570296 GPSM3Q9Y4H4 160 aa20.06■□□□□ 0.8
CLK3-227ENST00000570296 LNP1A1A4G5 178 aa20.05■□□□□ 0.8
CLK3-227ENST00000570296 INO80B-WBP1J3KQ70 363 aa20.05■□□□□ 0.8
CLK3-227ENST00000570296 PRRG1O14668 218 aa20.05■□□□□ 0.8
CLK3-227ENST00000570296 ZBTB43O43298 467 aa20.05■□□□□ 0.8
CLK3-227ENST00000570296 EXTL3O43909 919 aa20.05■□□□□ 0.8
CLK3-227ENST00000570296 DKC1O60832 514 aaKnown RBP eCLIP20.05■□□□□ 0.8
CLK3-227ENST00000570296 ELF1P32519 619 aa20.05■□□□□ 0.8
CLK3-227ENST00000570296 SOX9P48436 509 aa20.05■□□□□ 0.8
CLK3-227ENST00000570296 PXNP49023 591 aaPredicted RBP20.05■□□□□ 0.8
CLK3-227ENST00000570296 MXD4Q14582 209 aaPredicted RBP20.05■□□□□ 0.8
CLK3-227ENST00000570296 AMHR2Q16671 573 aa20.05■□□□□ 0.8
CLK3-227ENST00000570296 Q4G0T1 1027 aa20.05■□□□□ 0.8
CLK3-227ENST00000570296 TXNDC11Q6PKC3 985 aa20.05■□□□□ 0.8
CLK3-227ENST00000570296 ANKS3Q6ZW76 656 aa20.05■□□□□ 0.8
CLK3-227ENST00000570296 PROSER1Q86XN7 944 aa20.05■□□□□ 0.8
CLK3-227ENST00000570296 YAF2Q8IY57 180 aa20.05■□□□□ 0.8
CLK3-227ENST00000570296 ZNF579Q8NAF0 562 aaKnown RBP20.05■□□□□ 0.8
CLK3-227ENST00000570296 ZNF461Q8TAF7 563 aa20.05■□□□□ 0.8
CLK3-227ENST00000570296 ZSCAN18Q8TBC5 510 aaPredicted RBP20.05■□□□□ 0.8
CLK3-227ENST00000570296 TMEM9BQ9NQ34 198 aa20.05■□□□□ 0.8
CLK3-227ENST00000570296 ACACAQ13085 2346 aa20.05■□□□□ 0.8
CLK3-227ENST00000570296 NCANO14594 1321 aa20.04■□□□□ 0.8
CLK3-227ENST00000570296 ARID2Q68CP9 1835 aa20.04■□□□□ 0.8
CLK3-227ENST00000570296 HEPACAM2A8MVW5 462 aa20.04■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms