RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 TNNC2P02585 160 aa8.6□□□□□ -1.03
VPS39-213ENST00000570062 HMGCRP04035 888 aa8.6□□□□□ -1.03
VPS39-213ENST00000570062 SMIM10L2AP0DMW4 78 aa8.6□□□□□ -1.03
VPS39-213ENST00000570062 SMIM10L2BP0DMW5 78 aa8.6□□□□□ -1.03
VPS39-213ENST00000570062 CYBAP13498 195 aa8.6□□□□□ -1.03
VPS39-213ENST00000570062 CST5P28325 142 aaPredicted RBP8.6□□□□□ -1.03
VPS39-213ENST00000570062 CASQ1P31415 396 aa8.6□□□□□ -1.03
VPS39-213ENST00000570062 MAGEA1P43355 309 aa8.6□□□□□ -1.03
VPS39-213ENST00000570062 GCGRP47871 477 aa8.6□□□□□ -1.03
VPS39-213ENST00000570062 GCLMP48507 274 aa8.6□□□□□ -1.03
VPS39-213ENST00000570062 KLK7P49862 253 aa8.6□□□□□ -1.03
VPS39-213ENST00000570062 KIF11P52732 1056 aa8.6□□□□□ -1.03
VPS39-213ENST00000570062 VAV2P52735 878 aa8.6□□□□□ -1.03
VPS39-213ENST00000570062 SOX10P56693 466 aa8.6□□□□□ -1.03
VPS39-213ENST00000570062 JAM2P57087 298 aa8.6□□□□□ -1.03
VPS39-213ENST00000570062 GNG11P61952 73 aa8.6□□□□□ -1.03
VPS39-213ENST00000570062 YWHAEP62258 255 aaKnown RBP8.6□□□□□ -1.03
VPS39-213ENST00000570062 IGBP1P78318 339 aa8.6□□□□□ -1.03
VPS39-213ENST00000570062 MBTD1Q05BQ5 628 aa8.6□□□□□ -1.03
VPS39-213ENST00000570062 SGSM1Q2NKQ1 1148 aa8.6□□□□□ -1.03
VPS39-213ENST00000570062 ZACNQ401N2 412 aa8.6□□□□□ -1.03
VPS39-213ENST00000570062 CBWD6Q4V339 395 aa8.6□□□□□ -1.03
VPS39-213ENST00000570062 CBWD3Q5JTY5 395 aa8.6□□□□□ -1.03
VPS39-213ENST00000570062 GNASQ5JWF2 1037 aa8.6□□□□□ -1.03
VPS39-213ENST00000570062 CBWD5Q5RIA9 395 aa8.6□□□□□ -1.03
VPS39-213ENST00000570062 SLC39A4Q6P5W5 647 aa8.6□□□□□ -1.03
VPS39-213ENST00000570062 TOGARAM2Q6ZUX3 1019 aa8.6□□□□□ -1.03
VPS39-213ENST00000570062 SV2AQ7L0J3 742 aa8.6□□□□□ -1.03
VPS39-213ENST00000570062 RNF180Q86T96 592 aa8.6□□□□□ -1.03
VPS39-213ENST00000570062 RPAINQ86UA6 219 aa8.6□□□□□ -1.03
VPS39-213ENST00000570062 SESTD1Q86VW0 696 aa8.6□□□□□ -1.03
VPS39-213ENST00000570062 ZNF677Q86XU0 584 aa8.6□□□□□ -1.03
VPS39-213ENST00000570062 CBWD2Q8IUF1 395 aa8.6□□□□□ -1.03
VPS39-213ENST00000570062 KIAA0319LQ8IZA0 1049 aa8.6□□□□□ -1.03
VPS39-213ENST00000570062 FAM160A2Q8N612 972 aaPredicted RBP8.6□□□□□ -1.03
VPS39-213ENST00000570062 TRIM58Q8NG06 486 aa8.6□□□□□ -1.03
VPS39-213ENST00000570062 CCDC127Q96BQ5 260 aa8.6□□□□□ -1.03
VPS39-213ENST00000570062 ALS2CR12Q96Q35 445 aa8.6□□□□□ -1.03
VPS39-213ENST00000570062 CHP1Q99653 195 aa8.6□□□□□ -1.03
VPS39-213ENST00000570062 CGRRF1Q99675 332 aa8.6□□□□□ -1.03
VPS39-213ENST00000570062 IFIH1Q9BYX4 1025 aaKnown RBP8.6□□□□□ -1.03
VPS39-213ENST00000570062 RPF1Q9H9Y2 349 aaKnown RBP8.6□□□□□ -1.03
VPS39-213ENST00000570062 PTPRHQ9HD43 1115 aa8.6□□□□□ -1.03
VPS39-213ENST00000570062 C1orf112Q9NSG2 853 aa8.6□□□□□ -1.03
VPS39-213ENST00000570062 FLRT1Q9NZU1 646 aa8.6□□□□□ -1.03
VPS39-213ENST00000570062 SRRDQ9UH36 339 aa8.6□□□□□ -1.03
VPS39-213ENST00000570062 DERAQ9Y315 318 aa8.6□□□□□ -1.03
VPS39-213ENST00000570062 A0A087WZ62 844 aa8.59□□□□□ -1.03
VPS39-213ENST00000570062 A0A1B0GUA9 196 aa8.59□□□□□ -1.03
VPS39-213ENST00000570062 GOLGA8IPA6NC78 632 aa8.59□□□□□ -1.03
VPS39-213ENST00000570062 MOXD2PA6NHM9 499 aa8.59□□□□□ -1.03
VPS39-213ENST00000570062 GOLGA8JA6NMD2 632 aa8.59□□□□□ -1.03
VPS39-213ENST00000570062 LRRIQ3A6PVS8 624 aaPredicted RBP8.59□□□□□ -1.03
VPS39-213ENST00000570062 F8VZ95 297 aa8.59□□□□□ -1.03
VPS39-213ENST00000570062 PJA2O43164 708 aa8.59□□□□□ -1.03
VPS39-213ENST00000570062 XPOTO43592 962 aaKnown RBP8.59□□□□□ -1.03
VPS39-213ENST00000570062 CAND2O75155 1236 aa8.59□□□□□ -1.03
VPS39-213ENST00000570062 PHACTR2O75167 634 aa8.59□□□□□ -1.03
VPS39-213ENST00000570062 TACC1O75410 805 aa8.59□□□□□ -1.03
VPS39-213ENST00000570062 C4BPAP04003 597 aaKnown RBP8.59□□□□□ -1.03
VPS39-213ENST00000570062 MYL3P08590 195 aa8.59□□□□□ -1.03
VPS39-213ENST00000570062 C6orf222P0C671 652 aaPredicted RBP8.59□□□□□ -1.03
VPS39-213ENST00000570062 ZNF286BP0CG31 522 aa8.59□□□□□ -1.03
VPS39-213ENST00000570062 TRIM49P0CI25 452 aa8.59□□□□□ -1.03
VPS39-213ENST00000570062 TRIM49CP0CI26 452 aa8.59□□□□□ -1.03
VPS39-213ENST00000570062 DLATP10515 647 aaKnown RBP8.59□□□□□ -1.03
VPS39-213ENST00000570062 CYP2C9P11712 490 aa8.59□□□□□ -1.03
VPS39-213ENST00000570062 P4HA1P13674 534 aa8.59□□□□□ -1.03
VPS39-213ENST00000570062 ATICP31939 592 aa8.59□□□□□ -1.03
VPS39-213ENST00000570062 EIF4A3P38919 411 aaKnown RBP8.59□□□□□ -1.03
VPS39-213ENST00000570062 CLCN3P51790 818 aa8.59□□□□□ -1.03
VPS39-213ENST00000570062 CRYBB1P53674 252 aaPredicted RBP8.59□□□□□ -1.03
VPS39-213ENST00000570062 PPP3CAQ08209 521 aa8.59□□□□□ -1.03
VPS39-213ENST00000570062 GOLGA8FQ08AF8 430 aa8.59□□□□□ -1.03
VPS39-213ENST00000570062 GOLGA8DPQ0D2H9 430 aa8.59□□□□□ -1.03
VPS39-213ENST00000570062 DRAP1Q14919 205 aaPredicted RBP8.59□□□□□ -1.03
VPS39-213ENST00000570062 NAB2Q15742 525 aa8.59□□□□□ -1.03
VPS39-213ENST00000570062 PTPN21Q16825 1174 aa8.59□□□□□ -1.03
VPS39-213ENST00000570062 ASTE1Q2TB18 679 aaPredicted RBP8.59□□□□□ -1.03
VPS39-213ENST00000570062 ZNF568Q3ZCX4 644 aa8.59□□□□□ -1.03
VPS39-213ENST00000570062 PRAMEF19Q5SWL8 479 aa8.59□□□□□ -1.03
VPS39-213ENST00000570062 CCDC122Q5T0U0 273 aa8.59□□□□□ -1.03
VPS39-213ENST00000570062 IQCEQ6IPM2 695 aa8.59□□□□□ -1.03
VPS39-213ENST00000570062 C15orf39Q6ZRI6 1047 aa8.59□□□□□ -1.03
VPS39-213ENST00000570062 IRF2BP2Q7Z5L9 587 aa8.59□□□□□ -1.03
VPS39-213ENST00000570062 HACE1Q8IYU2 909 aa8.59□□□□□ -1.03
VPS39-213ENST00000570062 CYP4X1Q8N118 509 aa8.59□□□□□ -1.03
VPS39-213ENST00000570062 CCDC155Q8N6L0 562 aa8.59□□□□□ -1.03
VPS39-213ENST00000570062 LMO3Q8TAP4 145 aa8.59□□□□□ -1.03
VPS39-213ENST00000570062 RAET1EQ8TD07 263 aa8.59□□□□□ -1.03
VPS39-213ENST00000570062 SAAL1Q96ER3 474 aa8.59□□□□□ -1.03
VPS39-213ENST00000570062 ANKRD36BP1Q96IX9 119 aa8.59□□□□□ -1.03
VPS39-213ENST00000570062 FDXACB1Q9BRP7 624 aaPredicted RBP8.59□□□□□ -1.03
VPS39-213ENST00000570062 TSEN34Q9BSV6 310 aaKnown RBP8.59□□□□□ -1.03
VPS39-213ENST00000570062 CCDC94Q9BW85 323 aaPredicted RBP8.59□□□□□ -1.03
VPS39-213ENST00000570062 IFT122Q9HBG6 1241 aa8.59□□□□□ -1.03
VPS39-213ENST00000570062 SIX2Q9NPC8 291 aa8.59□□□□□ -1.03
VPS39-213ENST00000570062 UBE2TQ9NPD8 197 aaPredicted RBP8.59□□□□□ -1.03
VPS39-213ENST00000570062 ARHGAP20Q9P2F6 1191 aa8.59□□□□□ -1.03
VPS39-213ENST00000570062 ANKFY1Q9P2R3 1169 aa8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms