RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 GOLGA2P5Q9HBQ8 144 aa10.1□□□□□ -0.79
VPS35-211ENST00000569950 ANO10Q9NW15 660 aa10.1□□□□□ -0.79
VPS35-211ENST00000569950 MARCH5Q9NX47 278 aa10.1□□□□□ -0.79
VPS35-211ENST00000569950 TUBGCP4Q9UGJ1 667 aa10.1□□□□□ -0.79
VPS35-211ENST00000569950 PARP2Q9UGN5 583 aa10.1□□□□□ -0.79
VPS35-211ENST00000569950 PCDHA11Q9Y5I1 949 aa10.1□□□□□ -0.79
VPS35-211ENST00000569950 BRWD1Q9NSI6 2320 aa10.09□□□□□ -0.79
VPS35-211ENST00000569950 HSFX4A0A1B0GTS1 333 aaPredicted RBP10.09□□□□□ -0.79
VPS35-211ENST00000569950 HSFX3A0A1B0GWH4 333 aaPredicted RBP10.09□□□□□ -0.79
VPS35-211ENST00000569950 CALUO43852 315 aaPredicted RBP10.09□□□□□ -0.79
VPS35-211ENST00000569950 EXOC3O60645 756 aa10.09□□□□□ -0.79
VPS35-211ENST00000569950 LRRN2O75325 713 aa10.09□□□□□ -0.79
VPS35-211ENST00000569950 KIF20AO95235 890 aa10.09□□□□□ -0.79
VPS35-211ENST00000569950 LDHAP00338 332 aaKnown RBP10.09□□□□□ -0.79
VPS35-211ENST00000569950 ITGB1P05556 798 aa10.09□□□□□ -0.79
VPS35-211ENST00000569950 CA3P07451 260 aa10.09□□□□□ -0.79
VPS35-211ENST00000569950 PBX3P40426 434 aa10.09□□□□□ -0.79
VPS35-211ENST00000569950 FKBP3Q00688 224 aaKnown RBP10.09□□□□□ -0.79
VPS35-211ENST00000569950 TAP1Q03518 808 aa10.09□□□□□ -0.79
VPS35-211ENST00000569950 PPP3CAQ08209 521 aa10.09□□□□□ -0.79
VPS35-211ENST00000569950 PAN2Q504Q3 1202 aaKnown RBP10.09□□□□□ -0.79
VPS35-211ENST00000569950 LMBRD2Q68DH5 695 aaPredicted RBP10.09□□□□□ -0.79
VPS35-211ENST00000569950 SASS6Q6UVJ0 657 aa10.09□□□□□ -0.79
VPS35-211ENST00000569950 GLB1LQ6UWU2 654 aa10.09□□□□□ -0.79
VPS35-211ENST00000569950 FILIP1Q7Z7B0 1213 aa10.09□□□□□ -0.79
VPS35-211ENST00000569950 GAS2L3Q86XJ1 694 aa10.09□□□□□ -0.79
VPS35-211ENST00000569950 RDH13Q8NBN7 331 aa10.09□□□□□ -0.79
VPS35-211ENST00000569950 ENOX1Q8TC92 643 aaKnown RBP10.09□□□□□ -0.79
VPS35-211ENST00000569950 SLC35C1Q96A29 364 aa10.09□□□□□ -0.79
VPS35-211ENST00000569950 CEP63Q96MT8 703 aa10.09□□□□□ -0.79
VPS35-211ENST00000569950 BPIFA3Q9BQP9 254 aa10.09□□□□□ -0.79
VPS35-211ENST00000569950 MKNK1Q9BUB5 465 aa10.09□□□□□ -0.79
VPS35-211ENST00000569950 ASB7Q9H672 318 aa10.09□□□□□ -0.79
VPS35-211ENST00000569950 PLEKHA5Q9HAU0 1116 aa10.09□□□□□ -0.79
VPS35-211ENST00000569950 SAMSN1Q9NSI8 373 aaKnown RBP10.09□□□□□ -0.79
VPS35-211ENST00000569950 RBAKQ9NYW8 714 aaPredicted RBP10.09□□□□□ -0.79
VPS35-211ENST00000569950 SIX4Q9UIU6 781 aa10.09□□□□□ -0.79
VPS35-211ENST00000569950 INPP5FQ9Y2H2 1132 aa10.09□□□□□ -0.79
VPS35-211ENST00000569950 ANO9A1A5B4 782 aa10.08□□□□□ -0.8
VPS35-211ENST00000569950 BICDL2A1A5D9 508 aa10.08□□□□□ -0.8
VPS35-211ENST00000569950 EPOPA6NHQ4 379 aa10.08□□□□□ -0.8
VPS35-211ENST00000569950 ZNF233A6NK53 670 aa10.08□□□□□ -0.8
VPS35-211ENST00000569950 SLC16A3O15427 465 aaKnown RBP10.08□□□□□ -0.8
VPS35-211ENST00000569950 HOXA2O43364 376 aa10.08□□□□□ -0.8
VPS35-211ENST00000569950 TLL1O43897 1013 aa10.08□□□□□ -0.8
VPS35-211ENST00000569950 LETM1O95202 739 aaPredicted RBP10.08□□□□□ -0.8
VPS35-211ENST00000569950 VNN1O95497 513 aa10.08□□□□□ -0.8
VPS35-211ENST00000569950 PSMC2P35998 433 aaKnown RBP10.08□□□□□ -0.8
VPS35-211ENST00000569950 MATR3P43243 847 aaKnown RBP eCLIP10.08□□□□□ -0.8
VPS35-211ENST00000569950 SLC11A1P49279 550 aa10.08□□□□□ -0.8
VPS35-211ENST00000569950 SMAD3P84022 425 aaKnown RBP10.08□□□□□ -0.8
VPS35-211ENST00000569950 GRIK3Q13003 919 aa10.08□□□□□ -0.8
VPS35-211ENST00000569950 STIM1Q13586 685 aa10.08□□□□□ -0.8
VPS35-211ENST00000569950 KYAT1Q16773 422 aa10.08□□□□□ -0.8
VPS35-211ENST00000569950 SPATA1Q5VX52 437 aa10.08□□□□□ -0.8
VPS35-211ENST00000569950 LRSAM1Q6UWE0 723 aa10.08□□□□□ -0.8
VPS35-211ENST00000569950 TRIM59Q8IWR1 403 aa10.08□□□□□ -0.8
VPS35-211ENST00000569950 RNF168Q8IYW5 571 aaPredicted RBP10.08□□□□□ -0.8
VPS35-211ENST00000569950 CSGALNACT2Q8N6G5 542 aa10.08□□□□□ -0.8
VPS35-211ENST00000569950 C1orf127Q8N9H9 656 aa10.08□□□□□ -0.8
VPS35-211ENST00000569950 TMC2Q8TDI7 906 aa10.08□□□□□ -0.8
VPS35-211ENST00000569950 RABGGTAQ92696 567 aa10.08□□□□□ -0.8
VPS35-211ENST00000569950 SRRTQ9BXP5 876 aaKnown RBP10.08□□□□□ -0.8
VPS35-211ENST00000569950 MTIF3Q9H2K0 278 aaKnown RBP10.08□□□□□ -0.8
VPS35-211ENST00000569950 RPF1Q9H9Y2 349 aaKnown RBP10.08□□□□□ -0.8
VPS35-211ENST00000569950 CBX8Q9HC52 389 aa10.08□□□□□ -0.8
VPS35-211ENST00000569950 KIAA1586Q9HCI6 787 aa10.08□□□□□ -0.8
VPS35-211ENST00000569950 UBN1Q9NPG3 1134 aa10.08□□□□□ -0.8
VPS35-211ENST00000569950 INTS13Q9NVM9 706 aa10.08□□□□□ -0.8
VPS35-211ENST00000569950 LRFN2Q9ULH4 789 aa10.08□□□□□ -0.8
VPS35-211ENST00000569950 DERAQ9Y315 318 aa10.08□□□□□ -0.8
VPS35-211ENST00000569950 C2CD2Q9Y426 696 aa10.08□□□□□ -0.8
VPS35-211ENST00000569950 INSL6Q9Y581 213 aa10.08□□□□□ -0.8
VPS35-211ENST00000569950 PRUNE2Q8WUY3 3088 aa10.08□□□□□ -0.8
VPS35-211ENST00000569950 PRRC2BQ5JSZ5 2229 aaKnown RBP10.08□□□□□ -0.8
VPS35-211ENST00000569950 IKBKBO14920 756 aa10.07□□□□□ -0.8
VPS35-211ENST00000569950 CETN3O15182 167 aa10.07□□□□□ -0.8
VPS35-211ENST00000569950 SPTLC1O15269 473 aa10.07□□□□□ -0.8
VPS35-211ENST00000569950 IL18RAPO95256 599 aa10.07□□□□□ -0.8
VPS35-211ENST00000569950 C4BPAP04003 597 aaKnown RBP10.07□□□□□ -0.8
VPS35-211ENST00000569950 GALTP07902 379 aa10.07□□□□□ -0.8
VPS35-211ENST00000569950 TRIM49P0CI25 452 aa10.07□□□□□ -0.8
VPS35-211ENST00000569950 TRIM49CP0CI26 452 aa10.07□□□□□ -0.8
VPS35-211ENST00000569950 CCDC192P0DO97 292 aa10.07□□□□□ -0.8
VPS35-211ENST00000569950 DNAJB2P25686 324 aa10.07□□□□□ -0.8
VPS35-211ENST00000569950 LRPAP1P30533 357 aa10.07□□□□□ -0.8
VPS35-211ENST00000569950 AARSP49588 968 aaKnown RBP eCLIP10.07□□□□□ -0.8
VPS35-211ENST00000569950 PPP2R3AQ06190 1150 aa10.07□□□□□ -0.8
VPS35-211ENST00000569950 ENPEPQ07075 957 aa10.07□□□□□ -0.8
VPS35-211ENST00000569950 BFSP1Q12934 665 aa10.07□□□□□ -0.8
VPS35-211ENST00000569950 TUSC3Q13454 348 aa10.07□□□□□ -0.8
VPS35-211ENST00000569950 CAMK1Q14012 370 aa10.07□□□□□ -0.8
VPS35-211ENST00000569950 BTG3Q14201 252 aaPredicted RBP10.07□□□□□ -0.8
VPS35-211ENST00000569950 UPP1Q16831 310 aa10.07□□□□□ -0.8
VPS35-211ENST00000569950 MIIPQ5JXC2 388 aa10.07□□□□□ -0.8
VPS35-211ENST00000569950 TDRD10Q5VZ19 366 aaKnown RBP10.07□□□□□ -0.8
VPS35-211ENST00000569950 CEP135Q66GS9 1140 aa10.07□□□□□ -0.8
VPS35-211ENST00000569950 DPY19L2P1Q6NXN4 242 aa10.07□□□□□ -0.8
VPS35-211ENST00000569950 APBB1IPQ7Z5R6 666 aaPredicted RBP10.07□□□□□ -0.8
VPS35-211ENST00000569950 CD302Q8IX05 232 aa10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms