RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 BORCS6Q96GS4 357 aa15.41■□□□□ 0.06
VPS35-210ENST00000568784 KCNH7Q9NS40 1196 aa15.41■□□□□ 0.06
VPS35-210ENST00000568784 SLTMQ9NWH9 1034 aaKnown RBP eCLIP15.41■□□□□ 0.06
VPS35-210ENST00000568784 PCDHB4Q9Y5E5 795 aa15.41■□□□□ 0.06
VPS35-210ENST00000568784 CDH16O75309 829 aa15.41■□□□□ 0.06
VPS35-210ENST00000568784 GGPS1O95749 300 aa15.41■□□□□ 0.06
VPS35-210ENST00000568784 DMP1Q13316 513 aaPredicted RBP15.41■□□□□ 0.06
VPS35-210ENST00000568784 MPP2Q14168 576 aa15.41■□□□□ 0.06
VPS35-210ENST00000568784 TMEM132AQ24JP5 1023 aa15.41■□□□□ 0.06
VPS35-210ENST00000568784 LIN9Q5TKA1 542 aa15.41■□□□□ 0.06
VPS35-210ENST00000568784 CYFIP1Q7L576 1253 aa15.41■□□□□ 0.06
VPS35-210ENST00000568784 SP8Q8IXZ3 490 aa15.41■□□□□ 0.06
VPS35-210ENST00000568784 SERPINB12Q96P63 405 aa15.41■□□□□ 0.06
VPS35-210ENST00000568784 ADAM22Q9P0K1 906 aa15.41■□□□□ 0.06
VPS35-210ENST00000568784 ANKFY1Q9P2R3 1169 aa15.41■□□□□ 0.06
VPS35-210ENST00000568784 PCDHA3Q9Y5H8 950 aa15.41■□□□□ 0.06
VPS35-210ENST00000568784 FRMPD4Q14CM0 1322 aa15.41■□□□□ 0.06
VPS35-210ENST00000568784 CBX6O95503 412 aa15.41■□□□□ 0.06
VPS35-210ENST00000568784 PEX5P50542 639 aa15.41■□□□□ 0.06
VPS35-210ENST00000568784 DRG2P55039 364 aaKnown RBP15.41■□□□□ 0.06
VPS35-210ENST00000568784 ATP13A4Q4VNC1 1196 aa15.41■□□□□ 0.06
VPS35-210ENST00000568784 TMEM270Q6UE05 265 aa15.41■□□□□ 0.06
VPS35-210ENST00000568784 PPP1R21Q6ZMI0 780 aa15.41■□□□□ 0.06
VPS35-210ENST00000568784 ATL2Q8NHH9 583 aa15.41■□□□□ 0.06
VPS35-210ENST00000568784 TRAIPQ9BWF2 469 aa15.41■□□□□ 0.06
VPS35-210ENST00000568784 ROPN1BQ9BZX4 212 aaPredicted RBP15.41■□□□□ 0.06
VPS35-210ENST00000568784 ROPN1Q9HAT0 212 aaPredicted RBP15.41■□□□□ 0.06
VPS35-210ENST00000568784 AGTPBP1Q9UPW5 1226 aa15.41■□□□□ 0.06
VPS35-210ENST00000568784 AFF2P51816 1311 aa15.41■□□□□ 0.06
VPS35-210ENST00000568784 CYP3A4P08684 503 aa15.4■□□□□ 0.06
VPS35-210ENST00000568784 NOP14P78316 857 aaKnown RBP15.4■□□□□ 0.06
VPS35-210ENST00000568784 WLSQ5T9L3 541 aa15.4■□□□□ 0.06
VPS35-210ENST00000568784 CAPRIN2Q6IMN6 1127 aaKnown RBP15.4■□□□□ 0.06
VPS35-210ENST00000568784 HHIPL2Q6UWX4 724 aa15.4■□□□□ 0.06
VPS35-210ENST00000568784 CCDC89Q8N998 374 aa15.4■□□□□ 0.06
VPS35-210ENST00000568784 CEP170P1Q96L14 293 aa15.4■□□□□ 0.06
VPS35-210ENST00000568784 TRABDQ9H4I3 376 aa15.4■□□□□ 0.06
VPS35-210ENST00000568784 C10orf88Q9H8K7 445 aa15.4■□□□□ 0.06
VPS35-210ENST00000568784 NPHS2Q9NP85 383 aa15.4■□□□□ 0.06
VPS35-210ENST00000568784 RAB20Q9NX57 234 aa15.4■□□□□ 0.06
VPS35-210ENST00000568784 LRRD1A4D1F6 860 aa15.4■□□□□ 0.06
VPS35-210ENST00000568784 ATP2A1O14983 1001 aa15.4■□□□□ 0.06
VPS35-210ENST00000568784 P4HBP07237 508 aaKnown RBP15.4■□□□□ 0.06
VPS35-210ENST00000568784 ETS1P14921 441 aa15.4■□□□□ 0.06
VPS35-210ENST00000568784 CHRNB2P17787 502 aa15.4■□□□□ 0.06
VPS35-210ENST00000568784 YWHABP31946 246 aaKnown RBP15.4■□□□□ 0.06
VPS35-210ENST00000568784 MAGEA4P43358 317 aa15.4■□□□□ 0.06
VPS35-210ENST00000568784 VSTM1Q6UX27 236 aa15.4■□□□□ 0.06
VPS35-210ENST00000568784 SH3BP5LQ7L8J4 393 aa15.4■□□□□ 0.06
VPS35-210ENST00000568784 USP37Q86T82 979 aa15.4■□□□□ 0.06
VPS35-210ENST00000568784 SIAH1Q8IUQ4 282 aa15.4■□□□□ 0.06
VPS35-210ENST00000568784 RAB3IPQ96QF0 476 aaPredicted RBP15.4■□□□□ 0.06
VPS35-210ENST00000568784 NUDCD1Q96RS6 583 aa15.4■□□□□ 0.06
VPS35-210ENST00000568784 SLC12A4Q9UP95 1085 aa15.4■□□□□ 0.06
VPS35-210ENST00000568784 EXOC7Q9UPT5 735 aa15.4■□□□□ 0.06
VPS35-210ENST00000568784 IGLV3-22A0A075B6J6 115 aa15.4■□□□□ 0.06
VPS35-210ENST00000568784 KRT1P04264 644 aa15.4■□□□□ 0.06
VPS35-210ENST00000568784 ZBTB48P10074 688 aaPredicted RBP15.4■□□□□ 0.06
VPS35-210ENST00000568784 PIK3CAP42336 1068 aa15.4■□□□□ 0.06
VPS35-210ENST00000568784 QARSP47897 775 aaKnown RBP15.4■□□□□ 0.06
VPS35-210ENST00000568784 MUM1Q2TAK8 710 aa15.4■□□□□ 0.06
VPS35-210ENST00000568784 DAW1Q8N136 415 aa15.4■□□□□ 0.06
VPS35-210ENST00000568784 GADD45GIP1Q8TAE8 222 aaPredicted RBP15.4■□□□□ 0.06
VPS35-210ENST00000568784 TXLNGYQ9BZA5 131 aa15.4■□□□□ 0.06
VPS35-210ENST00000568784 KIF1CO43896 1103 aaKnown RBP15.4■□□□□ 0.06
VPS35-210ENST00000568784 BANF1O75531 89 aa15.4■□□□□ 0.06
VPS35-210ENST00000568784 CNGA1P29973 690 aa15.4■□□□□ 0.06
VPS35-210ENST00000568784 PSMC4P43686 418 aa15.4■□□□□ 0.06
VPS35-210ENST00000568784 ACOT2P49753 483 aa15.4■□□□□ 0.06
VPS35-210ENST00000568784 CDR2Q01850 454 aa15.4■□□□□ 0.06
VPS35-210ENST00000568784 SCYL3Q8IZE3 742 aa15.4■□□□□ 0.06
VPS35-210ENST00000568784 CCHCR1Q8TD31 782 aa15.4■□□□□ 0.06
VPS35-210ENST00000568784 PLEKHO2Q8TD55 490 aa15.4■□□□□ 0.06
VPS35-210ENST00000568784 OSBPL8Q9BZF1 889 aa15.4■□□□□ 0.06
VPS35-210ENST00000568784 TXLNGQ9NUQ3 528 aa15.4■□□□□ 0.06
VPS35-210ENST00000568784 KIAA1551Q9HCM1 1747 aa15.39■□□□□ 0.05
VPS35-210ENST00000568784 FAM47DPA6NHR8 397 aa15.39■□□□□ 0.05
VPS35-210ENST00000568784 CIITAP33076 1130 aa15.39■□□□□ 0.05
VPS35-210ENST00000568784 ARSEP51690 589 aa15.39■□□□□ 0.05
VPS35-210ENST00000568784 TRAF1Q13077 416 aa15.39■□□□□ 0.05
VPS35-210ENST00000568784 CRYMQ14894 314 aa15.39■□□□□ 0.05
VPS35-210ENST00000568784 AOC3Q16853 763 aa15.39■□□□□ 0.05
VPS35-210ENST00000568784 MAIP1Q8WWC4 291 aa15.39■□□□□ 0.05
VPS35-210ENST00000568784 UVRAGQ9P2Y5 699 aa15.39■□□□□ 0.05
VPS35-210ENST00000568784 IKBKGQ9Y6K9 419 aa15.39■□□□□ 0.05
VPS35-210ENST00000568784 TLR3O15455 904 aaKnown RBP15.39■□□□□ 0.05
VPS35-210ENST00000568784 CCND1P24385 295 aa15.39■□□□□ 0.05
VPS35-210ENST00000568784 MTMR1Q13613 665 aa15.39■□□□□ 0.05
VPS35-210ENST00000568784 BRDTQ58F21 947 aaPredicted RBP15.39■□□□□ 0.05
VPS35-210ENST00000568784 C15orf52Q6ZUT6 534 aaKnown RBP15.39■□□□□ 0.05
VPS35-210ENST00000568784 CKAP2Q8WWK9 683 aa15.39■□□□□ 0.05
VPS35-210ENST00000568784 PRMT6Q96LA8 375 aaPredicted RBP15.39■□□□□ 0.05
VPS35-210ENST00000568784 MBOAT7Q96N66 472 aa15.39■□□□□ 0.05
VPS35-210ENST00000568784 MYLK2Q9H1R3 596 aa15.39■□□□□ 0.05
VPS35-210ENST00000568784 C12orf65Q9H3J6 166 aaKnown RBP15.39■□□□□ 0.05
VPS35-210ENST00000568784 RAVER2Q9HCJ3 691 aaKnown RBP15.39■□□□□ 0.05
VPS35-210ENST00000568784 PHTF1Q9UMS5 762 aa15.39■□□□□ 0.05
VPS35-210ENST00000568784 ECE2O60344 883 aa15.39■□□□□ 0.05
VPS35-210ENST00000568784 RAD17O75943 681 aa15.39■□□□□ 0.05
VPS35-210ENST00000568784 PDIA2Q13087 525 aaKnown RBP15.39■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms