RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 PEX3P56589 373 aa16.4■□□□□ 0.22
CLN3-236ENST00000568558 PTGDRQ13258 359 aa16.4■□□□□ 0.22
CLN3-236ENST00000568558 UPP1Q16831 310 aa16.4■□□□□ 0.22
CLN3-236ENST00000568558 AXDND1Q5T1B0 1012 aaPredicted RBP16.4■□□□□ 0.22
CLN3-236ENST00000568558 RSPO2Q6UXX9 243 aaPredicted RBP16.4■□□□□ 0.22
CLN3-236ENST00000568558 DAW1Q8N136 415 aa16.4■□□□□ 0.22
CLN3-236ENST00000568558 C3orf58Q8NDZ4 430 aa16.4■□□□□ 0.22
CLN3-236ENST00000568558 FGF13Q92913 245 aa16.4■□□□□ 0.22
CLN3-236ENST00000568558 DDX27Q96GQ7 796 aaKnown RBP16.4■□□□□ 0.22
CLN3-236ENST00000568558 ACO2Q99798 780 aaKnown RBP16.4■□□□□ 0.22
CLN3-236ENST00000568558 RPP25Q9BUL9 199 aaKnown RBP16.4■□□□□ 0.22
CLN3-236ENST00000568558 RAB34Q9BZG1 259 aa16.4■□□□□ 0.22
CLN3-236ENST00000568558 CDT1Q9H211 546 aa16.4■□□□□ 0.22
CLN3-236ENST00000568558 POLIQ9UNA4 740 aa16.4■□□□□ 0.22
CLN3-236ENST00000568558 PCDHB6Q9Y5E3 794 aa16.4■□□□□ 0.22
CLN3-236ENST00000568558 CDY1Q9Y6F8 540 aa16.4■□□□□ 0.22
CLN3-236ENST00000568558 SMIM28A0A1B0GU29 152 aa16.39■□□□□ 0.21
CLN3-236ENST00000568558 CCDC169A6NNP5 214 aa16.39■□□□□ 0.21
CLN3-236ENST00000568558 E9PMD0 336 aa16.39■□□□□ 0.21
CLN3-236ENST00000568558 TKTP29401 623 aaKnown RBP16.39■□□□□ 0.21
CLN3-236ENST00000568558 NPTX2P47972 431 aa16.39■□□□□ 0.21
CLN3-236ENST00000568558 SOX4Q06945 474 aaPredicted RBP16.39■□□□□ 0.21
CLN3-236ENST00000568558 UVSSAQ2YD98 709 aa16.39■□□□□ 0.21
CLN3-236ENST00000568558 ZNF568Q3ZCX4 644 aa16.39■□□□□ 0.21
CLN3-236ENST00000568558 XKR4Q5GH76 650 aa16.39■□□□□ 0.21
CLN3-236ENST00000568558 PARM1Q6UWI2 310 aa16.39■□□□□ 0.21
CLN3-236ENST00000568558 ITFG1Q8TB96 612 aa16.39■□□□□ 0.21
CLN3-236ENST00000568558 KIF2CQ99661 725 aa16.39■□□□□ 0.21
CLN3-236ENST00000568558 CCDC94Q9BW85 323 aaPredicted RBP16.39■□□□□ 0.21
CLN3-236ENST00000568558 TMEM134Q9H6X4 195 aa16.39■□□□□ 0.21
CLN3-236ENST00000568558 PTPRHQ9HD43 1115 aa16.39■□□□□ 0.21
CLN3-236ENST00000568558 BACE2Q9Y5Z0 518 aa16.39■□□□□ 0.21
CLN3-236ENST00000568558 CACNA1IQ9P0X4 2223 aa16.39■□□□□ 0.21
CLN3-236ENST00000568558 GVINP1Q7Z2Y8 2422 aa16.39■□□□□ 0.21
CLN3-236ENST00000568558 PP2D1A8MPX8 630 aa16.38■□□□□ 0.21
CLN3-236ENST00000568558 I3L4J1 428 aa16.38■□□□□ 0.21
CLN3-236ENST00000568558 TRAPPC3O43617 180 aa16.38■□□□□ 0.21
CLN3-236ENST00000568558 HIP1RO75146 1068 aa16.38■□□□□ 0.21
CLN3-236ENST00000568558 BRCC3P46736 316 aa16.38■□□□□ 0.21
CLN3-236ENST00000568558 YARSP54577 528 aaKnown RBP16.38■□□□□ 0.21
CLN3-236ENST00000568558 C8orf34Q49A92 452 aa16.38■□□□□ 0.21
CLN3-236ENST00000568558 KRT79Q5XKE5 535 aa16.38■□□□□ 0.21
CLN3-236ENST00000568558 ALKAL1Q6UXT8 129 aa16.38■□□□□ 0.21
CLN3-236ENST00000568558 ANKS3Q6ZW76 656 aa16.38■□□□□ 0.21
CLN3-236ENST00000568558 MTSS1LQ765P7 747 aa16.38■□□□□ 0.21
CLN3-236ENST00000568558 RTL10Q7L3V2 364 aa16.38■□□□□ 0.21
CLN3-236ENST00000568558 TAS1R3Q7RTX0 852 aa16.38■□□□□ 0.21
CLN3-236ENST00000568558 MRPL4Q9BYD3 311 aaKnown RBP16.38■□□□□ 0.21
CLN3-236ENST00000568558 TOPORSQ9NS56 1045 aaPredicted RBP16.38■□□□□ 0.21
CLN3-236ENST00000568558 HCFC1R1Q9NWW0 138 aa16.38■□□□□ 0.21
CLN3-236ENST00000568558 DLGAP2Q9P1A6 1054 aa16.38■□□□□ 0.21
CLN3-236ENST00000568558 ARHGAP28Q9P2N2 729 aa16.38■□□□□ 0.21
CLN3-236ENST00000568558 DNM3Q9UQ16 869 aa16.38■□□□□ 0.21
CLN3-236ENST00000568558 ZNF292O60281 2723 aa16.37■□□□□ 0.21
CLN3-236ENST00000568558 LAD1O00515 517 aa16.37■□□□□ 0.21
CLN3-236ENST00000568558 DCNP07585 359 aaKnown RBP16.37■□□□□ 0.21
CLN3-236ENST00000568558 PROZP22891 400 aa16.37■□□□□ 0.21
CLN3-236ENST00000568558 OSTNP61366 133 aa16.37■□□□□ 0.21
CLN3-236ENST00000568558 GPC5P78333 572 aa16.37■□□□□ 0.21
CLN3-236ENST00000568558 MAPK7Q13164 816 aa16.37■□□□□ 0.21
CLN3-236ENST00000568558 DMP1Q13316 513 aaPredicted RBP16.37■□□□□ 0.21
CLN3-236ENST00000568558 IL17AQ16552 155 aa16.37■□□□□ 0.21
CLN3-236ENST00000568558 PABPC1LQ4VXU2 614 aaKnown RBP16.37■□□□□ 0.21
CLN3-236ENST00000568558 SPECC1Q5M775 1068 aa16.37■□□□□ 0.21
CLN3-236ENST00000568558 RINT1Q6NUQ1 792 aa16.37■□□□□ 0.21
CLN3-236ENST00000568558 SNX27Q96L92 541 aa16.37■□□□□ 0.21
CLN3-236ENST00000568558 DRC1Q96MC2 740 aa16.37■□□□□ 0.21
CLN3-236ENST00000568558 ZMAT2Q96NC0 199 aaKnown RBP16.37■□□□□ 0.21
CLN3-236ENST00000568558 RUSC1Q9BVN2 902 aa16.37■□□□□ 0.21
CLN3-236ENST00000568558 KMT5AQ9NQR1 393 aa16.37■□□□□ 0.21
CLN3-236ENST00000568558 SLC38A7Q9NVC3 462 aa16.37■□□□□ 0.21
CLN3-236ENST00000568558 DNMT3BQ9UBC3 853 aaKnown RBP16.37■□□□□ 0.21
CLN3-236ENST00000568558 SIT1Q9Y3P8 196 aa16.37■□□□□ 0.21
CLN3-236ENST00000568558 ANK1P16157 1881 aa16.36■□□□□ 0.21
CLN3-236ENST00000568558 ABLIM1O14639 778 aa16.36■□□□□ 0.21
CLN3-236ENST00000568558 MCF2P10911 925 aa16.36■□□□□ 0.21
CLN3-236ENST00000568558 CDC25AP30304 524 aa16.36■□□□□ 0.21
CLN3-236ENST00000568558 PRPHP41219 470 aa16.36■□□□□ 0.21
CLN3-236ENST00000568558 STARD6P59095 220 aa16.36■□□□□ 0.21
CLN3-236ENST00000568558 ROR1Q01973 937 aa16.36■□□□□ 0.21
CLN3-236ENST00000568558 SLC8B1Q6J4K2 584 aa16.36■□□□□ 0.21
CLN3-236ENST00000568558 MPZL3Q6UWV2 235 aa16.36■□□□□ 0.21
CLN3-236ENST00000568558 C1orf186Q6ZWK4 172 aa16.36■□□□□ 0.21
CLN3-236ENST00000568558 KCNK18Q7Z418 384 aa16.36■□□□□ 0.21
CLN3-236ENST00000568558 NPAS3Q8IXF0 933 aa16.36■□□□□ 0.21
CLN3-236ENST00000568558 ADSSL1Q8N142 457 aa16.36■□□□□ 0.21
CLN3-236ENST00000568558 PJA1Q8NG27 643 aa16.36■□□□□ 0.21
CLN3-236ENST00000568558 MMTAG2Q9BU76 263 aaKnown RBP16.36■□□□□ 0.21
CLN3-236ENST00000568558 TARS2Q9BW92 718 aaKnown RBP16.36■□□□□ 0.21
CLN3-236ENST00000568558 FOXQ1Q9C009 403 aa16.36■□□□□ 0.21
CLN3-236ENST00000568558 C17orf75Q9HAS0 396 aa16.36■□□□□ 0.21
CLN3-236ENST00000568558 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.36■□□□□ 0.21
CLN3-236ENST00000568558 KCNH3Q9ULD8 1083 aa16.36■□□□□ 0.21
CLN3-236ENST00000568558 RBM19Q9Y4C8 960 aaKnown RBP16.36■□□□□ 0.21
CLN3-236ENST00000568558 WDR87Q6ZQQ6 2873 aa16.35■□□□□ 0.21
CLN3-236ENST00000568558 PODXLO00592 558 aa16.35■□□□□ 0.21
CLN3-236ENST00000568558 KCNE1P15382 129 aa16.35■□□□□ 0.21
CLN3-236ENST00000568558 VARS2Q5ST30 1063 aaKnown RBP16.35■□□□□ 0.21
CLN3-236ENST00000568558 DTHD1Q6ZMT9 781 aa16.35■□□□□ 0.21
CLN3-236ENST00000568558 SHDQ96IW2 340 aa16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms