RNA–Protein interactions for RNA: ENST00000568422.6

CLN3-231, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,168 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-231ENST00000568422 BACE2Q9Y5Z0 518 aa18.5■□□□□ 0.55
CLN3-231ENST00000568422 MYH15Q9Y2K3 1946 aa18.5■□□□□ 0.55
CLN3-231ENST00000568422 VPS13AQ96RL7 3174 aa18.5■□□□□ 0.55
CLN3-231ENST00000568422 KRBA1A5PL33 1030 aa18.49■□□□□ 0.55
CLN3-231ENST00000568422 E9PMD0 336 aa18.49■□□□□ 0.55
CLN3-231ENST00000568422 OR1D2P34982 312 aa18.49■□□□□ 0.55
CLN3-231ENST00000568422 XKR4Q5GH76 650 aa18.49■□□□□ 0.55
CLN3-231ENST00000568422 PHLDB3Q6NSJ2 640 aa18.49■□□□□ 0.55
CLN3-231ENST00000568422 ALKAL1Q6UXT8 129 aa18.49■□□□□ 0.55
CLN3-231ENST00000568422 ADAM12O43184 909 aa18.48■□□□□ 0.55
CLN3-231ENST00000568422 HIP1RO75146 1068 aa18.48■□□□□ 0.55
CLN3-231ENST00000568422 MCF2P10911 925 aa18.48■□□□□ 0.55
CLN3-231ENST00000568422 ZNF568Q3ZCX4 644 aa18.48■□□□□ 0.55
CLN3-231ENST00000568422 RILPL1Q5EBL4 403 aa18.48■□□□□ 0.55
CLN3-231ENST00000568422 GLRA4Q5JXX5 417 aa18.48■□□□□ 0.55
CLN3-231ENST00000568422 C1orf186Q6ZWK4 172 aa18.48■□□□□ 0.55
CLN3-231ENST00000568422 MTSS1LQ765P7 747 aa18.48■□□□□ 0.55
CLN3-231ENST00000568422 DAW1Q8N136 415 aa18.48■□□□□ 0.55
CLN3-231ENST00000568422 SLC7A14Q8TBB6 771 aa18.48■□□□□ 0.55
CLN3-231ENST00000568422 NTPCRQ9BSD7 190 aaKnown RBP18.48■□□□□ 0.55
CLN3-231ENST00000568422 CDT1Q9H211 546 aa18.48■□□□□ 0.55
CLN3-231ENST00000568422 EIF4ENIF1Q9NRA8 985 aaKnown RBP18.48■□□□□ 0.55
CLN3-231ENST00000568422 CA14Q9ULX7 337 aa18.48■□□□□ 0.55
CLN3-231ENST00000568422 NUMBLQ9Y6R0 609 aa18.48■□□□□ 0.55
CLN3-231ENST00000568422 PDCD11Q14690 1871 aaKnown RBP18.48■□□□□ 0.55
CLN3-231ENST00000568422 PRR23AA6NEV1 266 aa18.47■□□□□ 0.55
CLN3-231ENST00000568422 KCNE1P15382 129 aa18.47■□□□□ 0.55
CLN3-231ENST00000568422 PROZP22891 400 aa18.47■□□□□ 0.55
CLN3-231ENST00000568422 GUCY2CP25092 1073 aa18.47■□□□□ 0.55
CLN3-231ENST00000568422 ANGPT1Q15389 498 aa18.47■□□□□ 0.55
CLN3-231ENST00000568422 RINT1Q6NUQ1 792 aa18.47■□□□□ 0.55
CLN3-231ENST00000568422 CD300LGQ6UXG3 332 aa18.47■□□□□ 0.55
CLN3-231ENST00000568422 ASCL5Q7RTU5 278 aa18.47■□□□□ 0.55
CLN3-231ENST00000568422 GPR152Q8TDT2 470 aa18.47■□□□□ 0.55
CLN3-231ENST00000568422 FGF13Q92913 245 aa18.47■□□□□ 0.55
CLN3-231ENST00000568422 NKD2Q969F2 451 aaPredicted RBP18.47■□□□□ 0.55
CLN3-231ENST00000568422 SHDQ96IW2 340 aa18.47■□□□□ 0.55
CLN3-231ENST00000568422 ACAP3Q96P50 834 aa18.47■□□□□ 0.55
CLN3-231ENST00000568422 TCHPQ9BT92 498 aa18.47■□□□□ 0.55
CLN3-231ENST00000568422 RUSC1Q9BVN2 902 aa18.47■□□□□ 0.55
CLN3-231ENST00000568422 TBC1D17Q9HA65 648 aa18.47■□□□□ 0.55
CLN3-231ENST00000568422 ARHGEF3Q9NR81 526 aa18.47■□□□□ 0.55
CLN3-231ENST00000568422 KCNH3Q9ULD8 1083 aa18.47■□□□□ 0.55
CLN3-231ENST00000568422 POLIQ9UNA4 740 aa18.47■□□□□ 0.55
CLN3-231ENST00000568422 CDY1Q9Y6F8 540 aa18.47■□□□□ 0.55
CLN3-231ENST00000568422 NOTCH4Q99466 2003 aa18.46■□□□□ 0.55
CLN3-231ENST00000568422 DMDP11532 3685 aa18.46■□□□□ 0.55
CLN3-231ENST00000568422 PP2D1A8MPX8 630 aa18.46■□□□□ 0.55
CLN3-231ENST00000568422 CCL16O15467 120 aa18.46■□□□□ 0.55
CLN3-231ENST00000568422 RPL9P32969 192 aaKnown RBP18.46■□□□□ 0.55
CLN3-231ENST00000568422 SMTNP53814 917 aa18.46■□□□□ 0.55
CLN3-231ENST00000568422 STRN3Q13033 797 aa18.46■□□□□ 0.55
CLN3-231ENST00000568422 MAPK7Q13164 816 aa18.46■□□□□ 0.55
CLN3-231ENST00000568422 IL17AQ16552 155 aa18.46■□□□□ 0.55
CLN3-231ENST00000568422 MPZL3Q6UWV2 235 aa18.46■□□□□ 0.55
CLN3-231ENST00000568422 FRMD5Q7Z6J6 570 aa18.46■□□□□ 0.55
CLN3-231ENST00000568422 ZNF461Q8TAF7 563 aa18.46■□□□□ 0.55
CLN3-231ENST00000568422 SPIRE2Q8WWL2 714 aa18.46■□□□□ 0.55
CLN3-231ENST00000568422 MMTAG2Q9BU76 263 aaKnown RBP18.46■□□□□ 0.55
CLN3-231ENST00000568422 TARS2Q9BW92 718 aaKnown RBP18.46■□□□□ 0.55
CLN3-231ENST00000568422 KCND2Q9NZV8 630 aa18.46■□□□□ 0.55
CLN3-231ENST00000568422 SIT1Q9Y3P8 196 aa18.46■□□□□ 0.55
CLN3-231ENST00000568422 SYN3O14994 580 aa18.45■□□□□ 0.54
CLN3-231ENST00000568422 TKTP29401 623 aaKnown RBP18.45■□□□□ 0.54
CLN3-231ENST00000568422 CDC25AP30304 524 aa18.45■□□□□ 0.54
CLN3-231ENST00000568422 OSTNP61366 133 aa18.45■□□□□ 0.54
CLN3-231ENST00000568422 RABEP1Q15276 862 aa18.45■□□□□ 0.54
CLN3-231ENST00000568422 C8orf34Q49A92 452 aa18.45■□□□□ 0.54
CLN3-231ENST00000568422 PABPC1LQ4VXU2 614 aaKnown RBP18.45■□□□□ 0.54
CLN3-231ENST00000568422 HYIQ5T013 277 aa18.45■□□□□ 0.54
CLN3-231ENST00000568422 SLC8B1Q6J4K2 584 aa18.45■□□□□ 0.54
CLN3-231ENST00000568422 PARM1Q6UWI2 310 aa18.45■□□□□ 0.54
CLN3-231ENST00000568422 TAS1R3Q7RTX0 852 aa18.45■□□□□ 0.54
CLN3-231ENST00000568422 CEP120Q8N960 986 aa18.45■□□□□ 0.54
CLN3-231ENST00000568422 C3orf58Q8NDZ4 430 aa18.45■□□□□ 0.54
CLN3-231ENST00000568422 FGF14Q92915 247 aa18.45■□□□□ 0.54
CLN3-231ENST00000568422 SNX27Q96L92 541 aa18.45■□□□□ 0.54
CLN3-231ENST00000568422 SEMA4AQ9H3S1 761 aa18.45■□□□□ 0.54
CLN3-231ENST00000568422 GOLGA2P5Q9HBQ8 144 aa18.45■□□□□ 0.54
CLN3-231ENST00000568422 CNTN3Q9P232 1028 aa18.45■□□□□ 0.54
CLN3-231ENST00000568422 MIA3Q5JRA6 1907 aa18.45■□□□□ 0.54
CLN3-231ENST00000568422 PODXLO00592 558 aa18.44■□□□□ 0.54
CLN3-231ENST00000568422 SLC16A4O15374 487 aa18.44■□□□□ 0.54
CLN3-231ENST00000568422 TOM1L1O75674 476 aa18.44■□□□□ 0.54
CLN3-231ENST00000568422 STARD6P59095 220 aa18.44■□□□□ 0.54
CLN3-231ENST00000568422 NTHL1P78549 312 aa18.44■□□□□ 0.54
CLN3-231ENST00000568422 ATP2C1P98194 919 aaPredicted RBP18.44■□□□□ 0.54
CLN3-231ENST00000568422 SOX4Q06945 474 aaPredicted RBP18.44■□□□□ 0.54
CLN3-231ENST00000568422 MCTP1Q6DN14 999 aa18.44■□□□□ 0.54
CLN3-231ENST00000568422 RSPO2Q6UXX9 243 aaPredicted RBP18.44■□□□□ 0.54
CLN3-231ENST00000568422 ZPBP2Q6X784 338 aa18.44■□□□□ 0.54
CLN3-231ENST00000568422 KCNK18Q7Z418 384 aa18.44■□□□□ 0.54
CLN3-231ENST00000568422 SYT2Q8N9I0 419 aaPredicted RBP18.44■□□□□ 0.54
CLN3-231ENST00000568422 ITFG1Q8TB96 612 aa18.44■□□□□ 0.54
CLN3-231ENST00000568422 AVENQ9NQS1 362 aaPredicted RBP18.44■□□□□ 0.54
CLN3-231ENST00000568422 GTF3C5Q9Y5Q8 519 aaPredicted RBP18.44■□□□□ 0.54
CLN3-231ENST00000568422 ARHGEF37A1IGU5 675 aa18.43■□□□□ 0.54
CLN3-231ENST00000568422 H0YCG3 227 aa18.43■□□□□ 0.54
CLN3-231ENST00000568422 H7C4K7 107 aa18.43■□□□□ 0.54
CLN3-231ENST00000568422 I3L4J1 428 aa18.43■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms