RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 GUCY2CP25092 1073 aa20.53■□□□□ 0.88
CLN3-218ENST00000565688 OR1D2P34982 312 aa20.53■□□□□ 0.88
CLN3-218ENST00000565688 ATP2C1P98194 919 aaPredicted RBP20.53■□□□□ 0.88
CLN3-218ENST00000565688 MAPK7Q13164 816 aa20.53■□□□□ 0.88
CLN3-218ENST00000565688 HYIQ5T013 277 aa20.53■□□□□ 0.88
CLN3-218ENST00000565688 ALKAL1Q6UXT8 129 aa20.53■□□□□ 0.88
CLN3-218ENST00000565688 ANKS3Q6ZW76 656 aa20.53■□□□□ 0.88
CLN3-218ENST00000565688 GRASPQ7Z6J2 395 aaPredicted RBP20.53■□□□□ 0.88
CLN3-218ENST00000565688 NTPCRQ9BSD7 190 aaKnown RBP20.53■□□□□ 0.88
CLN3-218ENST00000565688 TCHPQ9BT92 498 aa20.53■□□□□ 0.88
CLN3-218ENST00000565688 BACE2Q9Y5Z0 518 aa20.53■□□□□ 0.88
CLN3-218ENST00000565688 DOCK8Q8NF50 2099 aa20.52■□□□□ 0.88
CLN3-218ENST00000565688 H3BQV1 296 aa20.52■□□□□ 0.88
CLN3-218ENST00000565688 ADAM12O43184 909 aa20.52■□□□□ 0.88
CLN3-218ENST00000565688 CFHP08603 1231 aa20.52■□□□□ 0.88
CLN3-218ENST00000565688 PROZP22891 400 aa20.52■□□□□ 0.88
CLN3-218ENST00000565688 SMTNP53814 917 aa20.52■□□□□ 0.88
CLN3-218ENST00000565688 STRN3Q13033 797 aa20.52■□□□□ 0.88
CLN3-218ENST00000565688 HTR4Q13639 388 aa20.52■□□□□ 0.88
CLN3-218ENST00000565688 AXDND1Q5T1B0 1012 aaPredicted RBP20.52■□□□□ 0.88
CLN3-218ENST00000565688 MPZL3Q6UWV2 235 aa20.52■□□□□ 0.88
CLN3-218ENST00000565688 TAS1R3Q7RTX0 852 aa20.52■□□□□ 0.88
CLN3-218ENST00000565688 KCNK18Q7Z418 384 aa20.52■□□□□ 0.88
CLN3-218ENST00000565688 CEP120Q8N960 986 aa20.52■□□□□ 0.88
CLN3-218ENST00000565688 SLC7A14Q8TBB6 771 aa20.52■□□□□ 0.88
CLN3-218ENST00000565688 SPIRE2Q8WWL2 714 aa20.52■□□□□ 0.88
CLN3-218ENST00000565688 ACAP3Q96P50 834 aa20.52■□□□□ 0.88
CLN3-218ENST00000565688 TARS2Q9BW92 718 aaKnown RBP20.52■□□□□ 0.88
CLN3-218ENST00000565688 KCND2Q9NZV8 630 aa20.52■□□□□ 0.88
CLN3-218ENST00000565688 CDH7Q9ULB5 785 aa20.52■□□□□ 0.88
CLN3-218ENST00000565688 SLC16A4O15374 487 aa20.51■□□□□ 0.87
CLN3-218ENST00000565688 KCNE1P15382 129 aa20.51■□□□□ 0.87
CLN3-218ENST00000565688 RFX1P22670 979 aa20.51■□□□□ 0.87
CLN3-218ENST00000565688 NBL1P41271 181 aa20.51■□□□□ 0.87
CLN3-218ENST00000565688 OSTNP61366 133 aa20.51■□□□□ 0.87
CLN3-218ENST00000565688 ZRSR1Q15695 479 aaKnown RBP20.51■□□□□ 0.87
CLN3-218ENST00000565688 ARL6IP4Q66PJ3 421 aaKnown RBP20.51■□□□□ 0.87
CLN3-218ENST00000565688 CCDC105Q8IYK2 499 aa20.51■□□□□ 0.87
CLN3-218ENST00000565688 CDK5RAP3Q96JB5 506 aa20.51■□□□□ 0.87
CLN3-218ENST00000565688 TMX3Q96JJ7 454 aa20.51■□□□□ 0.87
CLN3-218ENST00000565688 SNX27Q96L92 541 aa20.51■□□□□ 0.87
CLN3-218ENST00000565688 UPF2Q9HAU5 1272 aaKnown RBP20.51■□□□□ 0.87
CLN3-218ENST00000565688 GOLGA2P5Q9HBQ8 144 aa20.51■□□□□ 0.87
CLN3-218ENST00000565688 CDY1Q9Y6F8 540 aa20.51■□□□□ 0.87
CLN3-218ENST00000565688 STK25O00506 426 aa20.5■□□□□ 0.87
CLN3-218ENST00000565688 CCL16O15467 120 aa20.5■□□□□ 0.87
CLN3-218ENST00000565688 PI15O43692 258 aa20.5■□□□□ 0.87
CLN3-218ENST00000565688 PLS3P13797 630 aa20.5■□□□□ 0.87
CLN3-218ENST00000565688 TKTP29401 623 aaKnown RBP20.5■□□□□ 0.87
CLN3-218ENST00000565688 RPL9P32969 192 aaKnown RBP20.5■□□□□ 0.87
CLN3-218ENST00000565688 CD300LGQ6UXG3 332 aa20.5■□□□□ 0.87
CLN3-218ENST00000565688 SYT2Q8N9I0 419 aaPredicted RBP20.5■□□□□ 0.87
CLN3-218ENST00000565688 C3orf58Q8NDZ4 430 aa20.5■□□□□ 0.87
CLN3-218ENST00000565688 SLC2A4RGQ9NR83 387 aa20.5■□□□□ 0.87
CLN3-218ENST00000565688 CNTN3Q9P232 1028 aa20.5■□□□□ 0.87
CLN3-218ENST00000565688 POLIQ9UNA4 740 aa20.5■□□□□ 0.87
CLN3-218ENST00000565688 NUMBLQ9Y6R0 609 aa20.5■□□□□ 0.87
CLN3-218ENST00000565688 VWA8A3KMH1 1905 aa20.5■□□□□ 0.87
CLN3-218ENST00000565688 KRBA1A5PL33 1030 aa20.49■□□□□ 0.87
CLN3-218ENST00000565688 VWA3AA6NCI4 1184 aa20.49■□□□□ 0.87
CLN3-218ENST00000565688 SFI1A8K8P3 1242 aa20.49■□□□□ 0.87
CLN3-218ENST00000565688 H0YCG3 227 aa20.49■□□□□ 0.87
CLN3-218ENST00000565688 PODXLO00592 558 aa20.49■□□□□ 0.87
CLN3-218ENST00000565688 ABLIM1O14639 778 aa20.49■□□□□ 0.87
CLN3-218ENST00000565688 TOM1L1O75674 476 aa20.49■□□□□ 0.87
CLN3-218ENST00000565688 IGFBP6P24592 240 aaPredicted RBP20.49■□□□□ 0.87
CLN3-218ENST00000565688 GJB2P29033 226 aa20.49■□□□□ 0.87
CLN3-218ENST00000565688 MCM2P49736 904 aa20.49■□□□□ 0.87
CLN3-218ENST00000565688 SOX4Q06945 474 aaPredicted RBP20.49■□□□□ 0.87
CLN3-218ENST00000565688 MTSS1LQ765P7 747 aa20.49■□□□□ 0.87
CLN3-218ENST00000565688 DTWD2Q8NBA8 298 aa20.49■□□□□ 0.87
CLN3-218ENST00000565688 KCNH3Q9ULD8 1083 aa20.49■□□□□ 0.87
CLN3-218ENST00000565688 WDR87Q6ZQQ6 2873 aa20.49■□□□□ 0.87
CLN3-218ENST00000565688 VPS13AQ96RL7 3174 aa20.48■□□□□ 0.87
CLN3-218ENST00000565688 SYN3O14994 580 aa20.48■□□□□ 0.87
CLN3-218ENST00000565688 SLC26A4O43511 780 aa20.48■□□□□ 0.87
CLN3-218ENST00000565688 BRCC3P46736 316 aa20.48■□□□□ 0.87
CLN3-218ENST00000565688 NTHL1P78549 312 aa20.48■□□□□ 0.87
CLN3-218ENST00000565688 RAD51AP2Q09MP3 1159 aa20.48■□□□□ 0.87
CLN3-218ENST00000565688 NOLC1Q14978 699 aaKnown RBP eCLIP20.48■□□□□ 0.87
CLN3-218ENST00000565688 PHLDB3Q6NSJ2 640 aa20.48■□□□□ 0.87
CLN3-218ENST00000565688 RSPO2Q6UXX9 243 aaPredicted RBP20.48■□□□□ 0.87
CLN3-218ENST00000565688 ZPBP2Q6X784 338 aa20.48■□□□□ 0.87
CLN3-218ENST00000565688 TMEM161BQ8NDZ6 487 aa20.48■□□□□ 0.87
CLN3-218ENST00000565688 GPR152Q8TDT2 470 aa20.48■□□□□ 0.87
CLN3-218ENST00000565688 FGF13Q92913 245 aa20.48■□□□□ 0.87
CLN3-218ENST00000565688 AK8Q96MA6 479 aa20.48■□□□□ 0.87
CLN3-218ENST00000565688 ZMAT2Q96NC0 199 aaKnown RBP20.48■□□□□ 0.87
CLN3-218ENST00000565688 PNMA5Q96PV4 448 aa20.48■□□□□ 0.87
CLN3-218ENST00000565688 ARHGEF3Q9NR81 526 aa20.48■□□□□ 0.87
CLN3-218ENST00000565688 CA14Q9ULX7 337 aa20.48■□□□□ 0.87
CLN3-218ENST00000565688 CFAP54Q96N23 3096 aa20.48■□□□□ 0.87
CLN3-218ENST00000565688 TRIP11Q15643 1979 aa20.48■□□□□ 0.87
CLN3-218ENST00000565688 MYO15AQ9UKN7 3530 aa20.48■□□□□ 0.87
CLN3-218ENST00000565688 H7C4K7 107 aa20.47■□□□□ 0.87
CLN3-218ENST00000565688 I3L4J1 428 aa20.47■□□□□ 0.87
CLN3-218ENST00000565688 PLA2G4BP0C869 781 aa20.47■□□□□ 0.87
CLN3-218ENST00000565688 MAPTP10636 758 aaKnown RBP20.47■□□□□ 0.87
CLN3-218ENST00000565688 HARSP12081 509 aaKnown RBP20.47■□□□□ 0.87
CLN3-218ENST00000565688 SLC12A3P55017 1021 aa20.47■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms