RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 LIMA1Q9UHB6 759 aaKnown RBP22.35■■□□□ 1.17
CLN3-212ENST00000564574 UBQLN1Q9UMX0 589 aaKnown RBP22.35■■□□□ 1.17
CLN3-212ENST00000564574 UTP18Q9Y5J1 556 aaKnown RBP eCLIP22.35■■□□□ 1.17
CLN3-212ENST00000564574 SMIM28A0A1B0GU29 152 aa22.34■■□□□ 1.17
CLN3-212ENST00000564574 PTGESO14684 152 aa22.34■■□□□ 1.17
CLN3-212ENST00000564574 DGKIO75912 1065 aa22.34■■□□□ 1.17
CLN3-212ENST00000564574 UPP2O95045 317 aa22.34■■□□□ 1.17
CLN3-212ENST00000564574 THP07101 528 aa22.34■■□□□ 1.17
CLN3-212ENST00000564574 TPM2P07951 284 aa22.34■■□□□ 1.17
CLN3-212ENST00000564574 DLATP10515 647 aaKnown RBP22.34■■□□□ 1.17
CLN3-212ENST00000564574 TNNI1P19237 187 aa22.34■■□□□ 1.17
CLN3-212ENST00000564574 GTF2H1P32780 548 aa22.34■■□□□ 1.17
CLN3-212ENST00000564574 BMP8BP34820 402 aa22.34■■□□□ 1.17
CLN3-212ENST00000564574 WNT7BP56706 349 aa22.34■■□□□ 1.17
CLN3-212ENST00000564574 GRIK3Q13003 919 aa22.34■■□□□ 1.17
CLN3-212ENST00000564574 TMEM132DQ14C87 1099 aa22.34■■□□□ 1.17
CLN3-212ENST00000564574 DCAF17Q5H9S7 520 aaPredicted RBP22.34■■□□□ 1.17
CLN3-212ENST00000564574 NOMO2Q5JPE7 1267 aa22.34■■□□□ 1.17
CLN3-212ENST00000564574 JADE1Q6IE81 842 aa22.34■■□□□ 1.17
CLN3-212ENST00000564574 GSTCDQ8NEC7 633 aa22.34■■□□□ 1.17
CLN3-212ENST00000564574 SLC35C1Q96A29 364 aa22.34■■□□□ 1.17
CLN3-212ENST00000564574 KIF12Q96FN5 646 aa22.34■■□□□ 1.17
CLN3-212ENST00000564574 ANKRD36BP1Q96IX9 119 aa22.34■■□□□ 1.17
CLN3-212ENST00000564574 ZFP42Q96MM3 310 aa22.34■■□□□ 1.17
CLN3-212ENST00000564574 CASD1Q96PB1 797 aa22.34■■□□□ 1.17
CLN3-212ENST00000564574 TUBGCP2Q9BSJ2 902 aa22.34■■□□□ 1.17
CLN3-212ENST00000564574 INTS13Q9NVM9 706 aa22.34■■□□□ 1.17
CLN3-212ENST00000564574 LRRC10BA6NIK2 292 aa22.33■■□□□ 1.17
CLN3-212ENST00000564574 CYP3A5P20815 502 aa22.33■■□□□ 1.17
CLN3-212ENST00000564574 SCNN1GP51170 649 aa22.33■■□□□ 1.17
CLN3-212ENST00000564574 DLG4P78352 724 aa22.33■■□□□ 1.17
CLN3-212ENST00000564574 DUOXA2Q1HG44 320 aa22.33■■□□□ 1.17
CLN3-212ENST00000564574 EFCAB13Q8IY85 973 aa22.33■■□□□ 1.17
CLN3-212ENST00000564574 RNPC3Q96LT9 517 aaKnown RBP22.33■■□□□ 1.17
CLN3-212ENST00000564574 ZMAT2Q96NC0 199 aaKnown RBP22.33■■□□□ 1.17
CLN3-212ENST00000564574 PPP1R10Q96QC0 940 aaKnown RBP22.33■■□□□ 1.17
CLN3-212ENST00000564574 COLQQ9Y215 455 aaPredicted RBP22.33■■□□□ 1.17
CLN3-212ENST00000564574 INPP5FQ9Y2H2 1132 aa22.33■■□□□ 1.17
CLN3-212ENST00000564574 N4BP1O75113 896 aaKnown RBP22.32■■□□□ 1.16
CLN3-212ENST00000564574 GJB5O95377 273 aa22.32■■□□□ 1.16
CLN3-212ENST00000564574 TNNC2P02585 160 aa22.32■■□□□ 1.16
CLN3-212ENST00000564574 NFICP08651 508 aa22.32■■□□□ 1.16
CLN3-212ENST00000564574 TMEM191BP0C7N4 346 aa22.32■■□□□ 1.16
CLN3-212ENST00000564574 TRIM49P0CI25 452 aa22.32■■□□□ 1.16
CLN3-212ENST00000564574 TRIM49CP0CI26 452 aa22.32■■□□□ 1.16
CLN3-212ENST00000564574 ATP1A3P13637 1013 aa22.32■■□□□ 1.16
CLN3-212ENST00000564574 KRT31Q15323 416 aa22.32■■□□□ 1.16
CLN3-212ENST00000564574 SHHQ15465 462 aa22.32■■□□□ 1.16
CLN3-212ENST00000564574 ZBTB6Q15916 424 aa22.32■■□□□ 1.16
CLN3-212ENST00000564574 UVSSAQ2YD98 709 aa22.32■■□□□ 1.16
CLN3-212ENST00000564574 C9orf50Q5SZB4 431 aa22.32■■□□□ 1.16
CLN3-212ENST00000564574 C1orf220Q5T0J3 134 aa22.32■■□□□ 1.16
CLN3-212ENST00000564574 BEST2Q8NFU1 509 aa22.32■■□□□ 1.16
CLN3-212ENST00000564574 ZNF689Q96CS4 500 aaPredicted RBP22.32■■□□□ 1.16
CLN3-212ENST00000564574 CXCL16Q9H2A7 254 aa22.32■■□□□ 1.16
CLN3-212ENST00000564574 RC3H2Q9HBD1 1191 aaKnown RBP22.32■■□□□ 1.16
CLN3-212ENST00000564574 TMEM8AQ9HCN3 771 aa22.32■■□□□ 1.16
CLN3-212ENST00000564574 MIOSQ9NXC5 875 aa22.32■■□□□ 1.16
CLN3-212ENST00000564574 COL4A6Q14031 1691 aa22.32■■□□□ 1.16
CLN3-212ENST00000564574 TBKBP1A7MCY6 615 aa22.31■■□□□ 1.16
CLN3-212ENST00000564574 TULP1O00294 542 aaPredicted RBP22.31■■□□□ 1.16
CLN3-212ENST00000564574 PMM2O15305 246 aa22.31■■□□□ 1.16
CLN3-212ENST00000564574 AFPP02771 609 aaKnown RBP22.31■■□□□ 1.16
CLN3-212ENST00000564574 ATP2A2P16615 1042 aaKnown RBP22.31■■□□□ 1.16
CLN3-212ENST00000564574 HTRA4P83105 476 aaPredicted RBP22.31■■□□□ 1.16
CLN3-212ENST00000564574 TFAMQ00059 246 aaKnown RBP22.31■■□□□ 1.16
CLN3-212ENST00000564574 KCNH2Q12809 1159 aa22.31■■□□□ 1.16
CLN3-212ENST00000564574 GLRA4Q5JXX5 417 aa22.31■■□□□ 1.16
CLN3-212ENST00000564574 HERC6Q8IVU3 1022 aa22.31■■□□□ 1.16
CLN3-212ENST00000564574 CMTR2Q8IYT2 770 aaKnown RBP22.31■■□□□ 1.16
CLN3-212ENST00000564574 LRRC43Q8N309 656 aa22.31■■□□□ 1.16
CLN3-212ENST00000564574 POP1Q99575 1024 aaKnown RBP22.31■■□□□ 1.16
CLN3-212ENST00000564574 TBC1D13Q9NVG8 400 aa22.31■■□□□ 1.16
CLN3-212ENST00000564574 PTPRJQ12913 1337 aa22.31■■□□□ 1.16
CLN3-212ENST00000564574 P4HA2O15460 535 aa22.3■■□□□ 1.16
CLN3-212ENST00000564574 POMCP01189 267 aa22.3■■□□□ 1.16
CLN3-212ENST00000564574 MXI1P50539 228 aa22.3■■□□□ 1.16
CLN3-212ENST00000564574 COPB1P53618 953 aaKnown RBP22.3■■□□□ 1.16
CLN3-212ENST00000564574 PPP3CAQ08209 521 aa22.3■■□□□ 1.16
CLN3-212ENST00000564574 NAB2Q15742 525 aa22.3■■□□□ 1.16
CLN3-212ENST00000564574 VWA3BQ502W6 1294 aa22.3■■□□□ 1.16
CLN3-212ENST00000564574 LMBRD2Q68DH5 695 aaPredicted RBP22.3■■□□□ 1.16
CLN3-212ENST00000564574 KRT39Q6A163 491 aa22.3■■□□□ 1.16
CLN3-212ENST00000564574 ZNF516Q92618 1163 aa22.3■■□□□ 1.16
CLN3-212ENST00000564574 ZBED2Q9BTP6 218 aa22.3■■□□□ 1.16
CLN3-212ENST00000564574 NDST4Q9H3R1 872 aa22.3■■□□□ 1.16
CLN3-212ENST00000564574 TAB2Q9NYJ8 693 aa22.3■■□□□ 1.16
CLN3-212ENST00000564574 INSL6Q9Y581 213 aa22.3■■□□□ 1.16
CLN3-212ENST00000564574 C4BPAP04003 597 aaKnown RBP22.29■■□□□ 1.16
CLN3-212ENST00000564574 GCLMP48507 274 aa22.29■■□□□ 1.16
CLN3-212ENST00000564574 FMO5P49326 533 aa22.29■■□□□ 1.16
CLN3-212ENST00000564574 GATMP50440 423 aa22.29■■□□□ 1.16
CLN3-212ENST00000564574 AFF1P51825 1210 aaKnown RBP22.29■■□□□ 1.16
CLN3-212ENST00000564574 RNASELQ05823 741 aaKnown RBP22.29■■□□□ 1.16
CLN3-212ENST00000564574 TUSC3Q13454 348 aa22.29■■□□□ 1.16
CLN3-212ENST00000564574 ZACNQ401N2 412 aa22.29■■□□□ 1.16
CLN3-212ENST00000564574 FILIP1LQ4L180 1135 aa22.29■■□□□ 1.16
CLN3-212ENST00000564574 MIIPQ5JXC2 388 aa22.29■■□□□ 1.16
CLN3-212ENST00000564574 FAM117BQ6P1L5 589 aa22.29■■□□□ 1.16
CLN3-212ENST00000564574 C15orf39Q6ZRI6 1047 aa22.29■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms