RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 CYP4A11Q02928 519 aa8.11□□□□□ -1.11
VPS4A-203ENST00000564399 POU5F1BQ06416 359 aa8.11□□□□□ -1.11
VPS4A-203ENST00000564399 CAPSQ13938 189 aa8.11□□□□□ -1.11
VPS4A-203ENST00000564399 CTTNQ14247 550 aaKnown RBP8.11□□□□□ -1.11
VPS4A-203ENST00000564399 EPHA7Q15375 998 aa8.11□□□□□ -1.11
VPS4A-203ENST00000564399 SF3A2Q15428 464 aaKnown RBP8.11□□□□□ -1.11
VPS4A-203ENST00000564399 AMHR2Q16671 573 aa8.11□□□□□ -1.11
VPS4A-203ENST00000564399 INF2Q27J81 1249 aa8.11□□□□□ -1.11
VPS4A-203ENST00000564399 FAM78AQ5JUQ0 283 aa8.11□□□□□ -1.11
VPS4A-203ENST00000564399 NCAPH2Q6IBW4 605 aa8.11□□□□□ -1.11
VPS4A-203ENST00000564399 MOXD1Q6UVY6 613 aa8.11□□□□□ -1.11
VPS4A-203ENST00000564399 RTL10Q7L3V2 364 aa8.11□□□□□ -1.11
VPS4A-203ENST00000564399 LONP2Q86WA8 852 aa8.11□□□□□ -1.11
VPS4A-203ENST00000564399 IFNLR1Q8IU57 520 aaPredicted RBP8.11□□□□□ -1.11
VPS4A-203ENST00000564399 TPH2Q8IWU9 490 aa8.11□□□□□ -1.11
VPS4A-203ENST00000564399 BLIDQ8IZY5 108 aa8.11□□□□□ -1.11
VPS4A-203ENST00000564399 ZNF687Q8N1G0 1237 aa8.11□□□□□ -1.11
VPS4A-203ENST00000564399 SPEM1Q8N4L4 309 aa8.11□□□□□ -1.11
VPS4A-203ENST00000564399 FAM160A2Q8N612 972 aaPredicted RBP8.11□□□□□ -1.11
VPS4A-203ENST00000564399 ASAP3Q8TDY4 903 aa8.11□□□□□ -1.11
VPS4A-203ENST00000564399 DYDC2Q96IM9 177 aa8.11□□□□□ -1.11
VPS4A-203ENST00000564399 FAM20AQ96MK3 541 aa8.11□□□□□ -1.11
VPS4A-203ENST00000564399 CCDC43Q96MW1 224 aaKnown RBP8.11□□□□□ -1.11
VPS4A-203ENST00000564399 ZSWIM4Q9H7M6 989 aa8.11□□□□□ -1.11
VPS4A-203ENST00000564399 ZNF334Q9HCZ1 680 aaPredicted RBP8.11□□□□□ -1.11
VPS4A-203ENST00000564399 XPNPEP1Q9NQW7 623 aa8.11□□□□□ -1.11
VPS4A-203ENST00000564399 RGL1Q9NZL6 768 aa8.11□□□□□ -1.11
VPS4A-203ENST00000564399 MTRRQ9UBK8 725 aa8.11□□□□□ -1.11
VPS4A-203ENST00000564399 VAV3Q9UKW4 847 aa8.11□□□□□ -1.11
VPS4A-203ENST00000564399 A0A1B0GUA9 196 aa8.1□□□□□ -1.11
VPS4A-203ENST00000564399 PTGESO14684 152 aa8.1□□□□□ -1.11
VPS4A-203ENST00000564399 ZNF197O14709 1029 aa8.1□□□□□ -1.11
VPS4A-203ENST00000564399 ZNF263O14978 683 aa8.1□□□□□ -1.11
VPS4A-203ENST00000564399 B3GAT3O94766 335 aa8.1□□□□□ -1.11
VPS4A-203ENST00000564399 CHRNB1P11230 501 aa8.1□□□□□ -1.11
VPS4A-203ENST00000564399 HOXB3P14651 431 aaPredicted RBP8.1□□□□□ -1.11
VPS4A-203ENST00000564399 IFNAR1P17181 557 aa8.1□□□□□ -1.11
VPS4A-203ENST00000564399 FGFR3P22607 806 aa8.1□□□□□ -1.11
VPS4A-203ENST00000564399 FCARP24071 287 aa8.1□□□□□ -1.11
VPS4A-203ENST00000564399 KPNA1P52294 538 aaPredicted RBP8.1□□□□□ -1.11
VPS4A-203ENST00000564399 LIMK1P53667 647 aa8.1□□□□□ -1.11
VPS4A-203ENST00000564399 ARPP19P56211 112 aa8.1□□□□□ -1.11
VPS4A-203ENST00000564399 CCT2P78371 535 aaKnown RBP8.1□□□□□ -1.11
VPS4A-203ENST00000564399 SPIRE1Q08AE8 756 aa8.1□□□□□ -1.11
VPS4A-203ENST00000564399 LRRC32Q14392 662 aa8.1□□□□□ -1.11
VPS4A-203ENST00000564399 GAS6Q14393 721 aa8.1□□□□□ -1.11
VPS4A-203ENST00000564399 ACAP1Q15027 740 aa8.1□□□□□ -1.11
VPS4A-203ENST00000564399 CCDC6Q16204 474 aa8.1□□□□□ -1.11
VPS4A-203ENST00000564399 NTRK3Q16288 839 aa8.1□□□□□ -1.11
VPS4A-203ENST00000564399 TSGA10IPQ3SY00 556 aa8.1□□□□□ -1.11
VPS4A-203ENST00000564399 CYP4A22Q5TCH4 519 aa8.1□□□□□ -1.11
VPS4A-203ENST00000564399 PPP4R3AQ6IN85 833 aa8.1□□□□□ -1.11
VPS4A-203ENST00000564399 POTEHQ6S545 545 aa8.1□□□□□ -1.11
VPS4A-203ENST00000564399 VITQ6UXI7 678 aa8.1□□□□□ -1.11
VPS4A-203ENST00000564399 ANKS3Q6ZW76 656 aa8.1□□□□□ -1.11
VPS4A-203ENST00000564399 PDZD4Q76G19 769 aaPredicted RBP8.1□□□□□ -1.11
VPS4A-203ENST00000564399 MAP4K3Q8IVH8 894 aa8.1□□□□□ -1.11
VPS4A-203ENST00000564399 YAF2Q8IY57 180 aa8.1□□□□□ -1.11
VPS4A-203ENST00000564399 TRIM22Q8IYM9 498 aa8.1□□□□□ -1.11
VPS4A-203ENST00000564399 CSGALNACT1Q8TDX6 532 aa8.1□□□□□ -1.11
VPS4A-203ENST00000564399 DEPDC1BQ8WUY9 529 aa8.1□□□□□ -1.11
VPS4A-203ENST00000564399 SMARCD2Q92925 531 aa8.1□□□□□ -1.11
VPS4A-203ENST00000564399 TCEAL4Q96EI5 215 aa8.1□□□□□ -1.11
VPS4A-203ENST00000564399 ARRDC1-AS1Q9H2J1 176 aa8.1□□□□□ -1.11
VPS4A-203ENST00000564399 NCOA5Q9HCD5 579 aaKnown RBP8.1□□□□□ -1.11
VPS4A-203ENST00000564399 AVENQ9NQS1 362 aaPredicted RBP8.1□□□□□ -1.11
VPS4A-203ENST00000564399 RBM12Q9NTZ6 932 aaKnown RBP8.1□□□□□ -1.11
VPS4A-203ENST00000564399 SNTG2Q9NY99 539 aa8.1□□□□□ -1.11
VPS4A-203ENST00000564399 PCNX2A6NKB5 2137 aa8.09□□□□□ -1.11
VPS4A-203ENST00000564399 CCDC194A0A1B0GVG4 234 aa8.09□□□□□ -1.11
VPS4A-203ENST00000564399 WDR27A2RRH5 827 aa8.09□□□□□ -1.11
VPS4A-203ENST00000564399 LRRIQ4A6NIV6 560 aa8.09□□□□□ -1.11
VPS4A-203ENST00000564399 TRAPPC3O43617 180 aa8.09□□□□□ -1.11
VPS4A-203ENST00000564399 DGAT1O75907 488 aa8.09□□□□□ -1.11
VPS4A-203ENST00000564399 RECQL4O94761 1208 aa8.09□□□□□ -1.11
VPS4A-203ENST00000564399 KCNK5O95279 499 aa8.09□□□□□ -1.11
VPS4A-203ENST00000564399 GLRA2P23416 452 aa8.09□□□□□ -1.11
VPS4A-203ENST00000564399 TKTP29401 623 aaKnown RBP8.09□□□□□ -1.11
VPS4A-203ENST00000564399 ARL2P36404 184 aa8.09□□□□□ -1.11
VPS4A-203ENST00000564399 VIPR2P41587 438 aa8.09□□□□□ -1.11
VPS4A-203ENST00000564399 SSRP1Q08945 709 aaKnown RBP8.09□□□□□ -1.11
VPS4A-203ENST00000564399 PTGDRQ13258 359 aa8.09□□□□□ -1.11
VPS4A-203ENST00000564399 STPG1Q5TH74 334 aa8.09□□□□□ -1.11
VPS4A-203ENST00000564399 IQCEQ6IPM2 695 aa8.09□□□□□ -1.11
VPS4A-203ENST00000564399 BLOC1S2Q6QNY1 142 aa8.09□□□□□ -1.11
VPS4A-203ENST00000564399 KRT25Q7Z3Z0 450 aa8.09□□□□□ -1.11
VPS4A-203ENST00000564399 ELMOD1Q8N336 334 aa8.09□□□□□ -1.11
VPS4A-203ENST00000564399 ZNF461Q8TAF7 563 aa8.09□□□□□ -1.11
VPS4A-203ENST00000564399 FAM200AQ8TCP9 573 aa8.09□□□□□ -1.11
VPS4A-203ENST00000564399 DDX27Q96GQ7 796 aaKnown RBP8.09□□□□□ -1.11
VPS4A-203ENST00000564399 JAKMIP1Q96N16 626 aaKnown RBP8.09□□□□□ -1.11
VPS4A-203ENST00000564399 ASB16Q96NS5 453 aa8.09□□□□□ -1.11
VPS4A-203ENST00000564399 ADPGKQ9BRR6 497 aa8.09□□□□□ -1.11
VPS4A-203ENST00000564399 NFKBIZQ9BYH8 718 aa8.09□□□□□ -1.11
VPS4A-203ENST00000564399 POLR3FQ9H1D9 316 aaPredicted RBP8.09□□□□□ -1.11
VPS4A-203ENST00000564399 SLITRK6Q9H5Y7 841 aa8.09□□□□□ -1.11
VPS4A-203ENST00000564399 CYP4F11Q9HBI6 524 aa8.09□□□□□ -1.11
VPS4A-203ENST00000564399 TRPV5Q9NQA5 729 aa8.09□□□□□ -1.11
VPS4A-203ENST00000564399 RXFP3Q9NSD7 469 aa8.09□□□□□ -1.11
VPS4A-203ENST00000564399 PRMT7Q9NVM4 692 aaPredicted RBP8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms