RNA–Protein interactions for RNA: ENST00000564255.5

CHD9-209, Transcript of chromodomain helicase DNA binding protein 9, human

TSL 5

Gene CHD9, Length 2,896 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD9-209	ENST00000564255	SIDT1	Q9NXL6	827 aa	Known RBP	3.14	□□□□□ -1.91
CHD9-209	ENST00000564255	ING3	Q9NXR8	418 aa		3.14	□□□□□ -1.91
CHD9-209	ENST00000564255	CAMSAP3	Q9P1Y5	1249 aa	Predicted RBP	3.14	□□□□□ -1.91
CHD9-209	ENST00000564255	CPNE7	Q9UBL6	633 aa		3.14	□□□□□ -1.91
CHD9-209	ENST00000564255	CDC23	Q9UJX2	597 aa		3.14	□□□□□ -1.91
CHD9-209	ENST00000564255	AJAP1	Q9UKB5	411 aa	Predicted RBP	3.14	□□□□□ -1.91
CHD9-209	ENST00000564255	PCDHA1	Q9Y5I3	950 aa		3.14	□□□□□ -1.91
CHD9-209	ENST00000564255	BIN1	O00499	593 aa		3.14	□□□□□ -1.91
CHD9-209	ENST00000564255	PLA2G6	O60733	806 aa		3.14	□□□□□ -1.91
CHD9-209	ENST00000564255	SEMA7A	O75326	666 aa		3.14	□□□□□ -1.91
CHD9-209	ENST00000564255	ITGA10	O75578	1167 aa		3.14	□□□□□ -1.91
CHD9-209	ENST00000564255	WDHD1	O75717	1129 aa	Predicted RBP	3.14	□□□□□ -1.91
CHD9-209	ENST00000564255	PARP1	P09874	1014 aa	Known RBP	3.14	□□□□□ -1.91
CHD9-209	ENST00000564255	HARS	P12081	509 aa	Known RBP	3.14	□□□□□ -1.91
CHD9-209	ENST00000564255	FLT3LG	P49771	235 aa		3.14	□□□□□ -1.91
CHD9-209	ENST00000564255	ADAM15	Q13444	863 aa		3.14	□□□□□ -1.91
CHD9-209	ENST00000564255	PMS2P11	Q13670	270 aa		3.14	□□□□□ -1.91
CHD9-209	ENST00000564255	BLMH	Q13867	455 aa		3.14	□□□□□ -1.91
CHD9-209	ENST00000564255	PCOLCE	Q15113	449 aa		3.14	□□□□□ -1.91
CHD9-209	ENST00000564255	ALF	Q53S48	1182 aa		3.14	□□□□□ -1.91
CHD9-209	ENST00000564255	KHDC1L	Q5JSQ8	128 aa		3.14	□□□□□ -1.91
CHD9-209	ENST00000564255	OTUD7B	Q6GQQ9	843 aa		3.14	□□□□□ -1.91
CHD9-209	ENST00000564255		Q6ZUG5	572 aa		3.14	□□□□□ -1.91
CHD9-209	ENST00000564255	ZNF354C	Q86Y25	554 aa		3.14	□□□□□ -1.91
CHD9-209	ENST00000564255	FAM9A	Q8IZU1	332 aa	Predicted RBP	3.14	□□□□□ -1.91
CHD9-209	ENST00000564255	MAML1	Q92585	1016 aa		3.14	□□□□□ -1.91
CHD9-209	ENST00000564255	YTHDC1	Q96MU7	727 aa	Known RBP	3.14	□□□□□ -1.91
CHD9-209	ENST00000564255	UHRF1	Q96T88	793 aa	Predicted RBP	3.14	□□□□□ -1.91
CHD9-209	ENST00000564255	C1orf43	Q9BWL3	253 aa		3.14	□□□□□ -1.91
CHD9-209	ENST00000564255	KRTAP9-9	Q9BYP9	154 aa		3.14	□□□□□ -1.91
CHD9-209	ENST00000564255	KRTAP9-4	Q9BYQ2	154 aa		3.14	□□□□□ -1.91
CHD9-209	ENST00000564255	STK33	Q9BYT3	514 aa		3.14	□□□□□ -1.91
CHD9-209	ENST00000564255	SENP6	Q9GZR1	1112 aa	Predicted RBP	3.14	□□□□□ -1.91
CHD9-209	ENST00000564255	LDAH	Q9H6V9	325 aa		3.14	□□□□□ -1.91
CHD9-209	ENST00000564255	STK32B	Q9NY57	414 aa		3.14	□□□□□ -1.91
CHD9-209	ENST00000564255	ANAPC4	Q9UJX5	808 aa		3.14	□□□□□ -1.91
CHD9-209	ENST00000564255	ZDHHC8	Q9ULC8	765 aa		3.14	□□□□□ -1.91
CHD9-209	ENST00000564255	PCDHA6	Q9UN73	950 aa		3.14	□□□□□ -1.91
CHD9-209	ENST00000564255	MED16	Q9Y2X0	877 aa		3.14	□□□□□ -1.91
CHD9-209	ENST00000564255	PCDHGB3	Q9Y5G1	929 aa		3.14	□□□□□ -1.91
CHD9-209	ENST00000564255	PCDHGB2	Q9Y5G2	931 aa		3.14	□□□□□ -1.91
CHD9-209	ENST00000564255	TRIM43B	A6NCK2	446 aa		3.13	□□□□□ -1.91
CHD9-209	ENST00000564255	PRSS29P	A6NIE9	313 aa		3.13	□□□□□ -1.91
CHD9-209	ENST00000564255	LRRC10B	A6NIK2	292 aa		3.13	□□□□□ -1.91
CHD9-209	ENST00000564255	APOL1	O14791	398 aa		3.13	□□□□□ -1.91
CHD9-209	ENST00000564255	TEX33	O43247	280 aa		3.13	□□□□□ -1.91
CHD9-209	ENST00000564255	VSIG10L2	P0DP72	767 aa		3.13	□□□□□ -1.91
CHD9-209	ENST00000564255	CSF2RB	P32927	897 aa		3.13	□□□□□ -1.91
CHD9-209	ENST00000564255	IL13	P35225	146 aa		3.13	□□□□□ -1.91
CHD9-209	ENST00000564255	CHKA	P35790	457 aa		3.13	□□□□□ -1.91
CHD9-209	ENST00000564255	HSPA7	P48741	367 aa		3.13	□□□□□ -1.91
CHD9-209	ENST00000564255	EPHB3	P54753	998 aa		3.13	□□□□□ -1.91
CHD9-209	ENST00000564255	DLX2	Q07687	328 aa	Predicted RBP	3.13	□□□□□ -1.91
CHD9-209	ENST00000564255	TRIM14	Q14142	442 aa		3.13	□□□□□ -1.91
CHD9-209	ENST00000564255	SEM1	Q6ZVN7	128 aa		3.13	□□□□□ -1.91
CHD9-209	ENST00000564255	SYTL1	Q8IYJ3	562 aa		3.13	□□□□□ -1.91
CHD9-209	ENST00000564255	RTKN2	Q8IZC4	609 aa		3.13	□□□□□ -1.91
CHD9-209	ENST00000564255	ATP11C	Q8NB49	1132 aa		3.13	□□□□□ -1.91
CHD9-209	ENST00000564255	IL17RD	Q8NFM7	739 aa		3.13	□□□□□ -1.91
CHD9-209	ENST00000564255	TRIM43	Q96BQ3	446 aa	Predicted RBP	3.13	□□□□□ -1.91
CHD9-209	ENST00000564255	NAP1L4	Q99733	375 aa	Known RBP	3.13	□□□□□ -1.91
CHD9-209	ENST00000564255	BRIP1	Q9BX63	1249 aa		3.13	□□□□□ -1.91
CHD9-209	ENST00000564255	JADE2	Q9NQC1	790 aa		3.13	□□□□□ -1.91
CHD9-209	ENST00000564255	AFF4	Q9UHB7	1163 aa	Known RBP	3.13	□□□□□ -1.91
CHD9-209	ENST00000564255	CPA4	Q9UI42	421 aa		3.13	□□□□□ -1.91
CHD9-209	ENST00000564255	GTF2A1L	Q9UNN4	478 aa		3.13	□□□□□ -1.91
CHD9-209	ENST00000564255	GPR52	Q9Y2T5	361 aa		3.13	□□□□□ -1.91
CHD9-209	ENST00000564255	hCG_1642624	A0A1W2PR95	340 aa		3.13	□□□□□ -1.91
CHD9-209	ENST00000564255	HMGCR	P04035	888 aa		3.13	□□□□□ -1.91
CHD9-209	ENST00000564255	ALOX15	P16050	662 aa	Predicted RBP	3.13	□□□□□ -1.91
CHD9-209	ENST00000564255	CD53	P19397	219 aa		3.13	□□□□□ -1.91
CHD9-209	ENST00000564255	RPL13	P26373	211 aa	Known RBP	3.13	□□□□□ -1.91
CHD9-209	ENST00000564255	CCT5	P48643	541 aa		3.13	□□□□□ -1.91
CHD9-209	ENST00000564255	GAGE13	Q4V321	117 aa		3.13	□□□□□ -1.91
CHD9-209	ENST00000564255	PABPC1L	Q4VXU2	614 aa	Known RBP	3.13	□□□□□ -1.91
CHD9-209	ENST00000564255	PRAMEF14	Q5SWL7	426 aa		3.13	□□□□□ -1.91
CHD9-209	ENST00000564255	REPS2	Q8NFH8	660 aa		3.13	□□□□□ -1.91
CHD9-209	ENST00000564255	LIN37	Q96GY3	246 aa	Predicted RBP	3.13	□□□□□ -1.91
CHD9-209	ENST00000564255	SCLT1	Q96NL6	688 aa		3.13	□□□□□ -1.91
CHD9-209	ENST00000564255	P2RX7	Q99572	595 aa	Known RBP	3.13	□□□□□ -1.91
CHD9-209	ENST00000564255	KCNH6	Q9H252	994 aa		3.13	□□□□□ -1.91
CHD9-209	ENST00000564255	SAGE1	Q9NXZ1	904 aa		3.13	□□□□□ -1.91
CHD9-209	ENST00000564255	ACTL7A	Q9Y615	435 aa		3.13	□□□□□ -1.91
CHD9-209	ENST00000564255	CARMIL2	Q6F5E8	1435 aa		3.12	□□□□□ -1.91
CHD9-209	ENST00000564255	NPHP1	O15259	732 aa		3.12	□□□□□ -1.91
CHD9-209	ENST00000564255	MATN4	O95460	622 aa		3.12	□□□□□ -1.91
CHD9-209	ENST00000564255	AHSG	P02765	367 aa		3.12	□□□□□ -1.91
CHD9-209	ENST00000564255	FPR1	P21462	350 aa		3.12	□□□□□ -1.91
CHD9-209	ENST00000564255	PIK3CG	P48736	1102 aa		3.12	□□□□□ -1.91
CHD9-209	ENST00000564255	PPM1F	P49593	454 aa	Predicted RBP	3.12	□□□□□ -1.91
CHD9-209	ENST00000564255	MRE11	P49959	708 aa		3.12	□□□□□ -1.91
CHD9-209	ENST00000564255	RENBP	P51606	427 aa		3.12	□□□□□ -1.91
CHD9-209	ENST00000564255	ICA1	Q05084	483 aa		3.12	□□□□□ -1.91
CHD9-209	ENST00000564255	DUSP2	Q05923	314 aa		3.12	□□□□□ -1.91
CHD9-209	ENST00000564255	NFYC	Q13952	458 aa		3.12	□□□□□ -1.91
CHD9-209	ENST00000564255	PUM3	Q15397	648 aa	Known RBP	3.12	□□□□□ -1.91
CHD9-209	ENST00000564255	FAM47A	Q5JRC9	791 aa		3.12	□□□□□ -1.91
CHD9-209	ENST00000564255	FRMD5	Q7Z6J6	570 aa		3.12	□□□□□ -1.91
CHD9-209	ENST00000564255	MICU3	Q86XE3	530 aa		3.12	□□□□□ -1.91
CHD9-209	ENST00000564255	LIX1L	Q8IVB5	337 aa		3.12	□□□□□ -1.91

Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms