RNA–Protein interactions for RNA: ENST00000563297.5

CLK3-211, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 526 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-211ENST00000563297 HOXA9P31269 272 aa17.28■□□□□ 0.36
CLK3-211ENST00000563297 SOX4Q06945 474 aaPredicted RBP17.28■□□□□ 0.36
CLK3-211ENST00000563297 UVSSAQ2YD98 709 aa17.28■□□□□ 0.36
CLK3-211ENST00000563297 AXDND1Q5T1B0 1012 aaPredicted RBP17.28■□□□□ 0.36
CLK3-211ENST00000563297 CCDC105Q8IYK2 499 aa17.28■□□□□ 0.36
CLK3-211ENST00000563297 DTWD2Q8NBA8 298 aa17.28■□□□□ 0.36
CLK3-211ENST00000563297 C3orf58Q8NDZ4 430 aa17.28■□□□□ 0.36
CLK3-211ENST00000563297 UROC1Q96N76 676 aa17.28■□□□□ 0.36
CLK3-211ENST00000563297 NTPCRQ9BSD7 190 aaKnown RBP17.28■□□□□ 0.36
CLK3-211ENST00000563297 RPP25Q9BUL9 199 aaKnown RBP17.28■□□□□ 0.36
CLK3-211ENST00000563297 CCDC94Q9BW85 323 aaPredicted RBP17.28■□□□□ 0.36
CLK3-211ENST00000563297 TARS2Q9BW92 718 aaKnown RBP17.28■□□□□ 0.36
CLK3-211ENST00000563297 KMT5AQ9NQR1 393 aa17.28■□□□□ 0.36
CLK3-211ENST00000563297 MTRRQ9UBK8 725 aa17.28■□□□□ 0.36
CLK3-211ENST00000563297 CA14Q9ULX7 337 aa17.28■□□□□ 0.36
CLK3-211ENST00000563297 RBM19Q9Y4C8 960 aaKnown RBP17.28■□□□□ 0.36
CLK3-211ENST00000563297 CFAP54Q96N23 3096 aa17.28■□□□□ 0.36
CLK3-211ENST00000563297 PHLPP2Q6ZVD8 1323 aa17.27■□□□□ 0.36
CLK3-211ENST00000563297 CITO14578 2027 aa17.27■□□□□ 0.36
CLK3-211ENST00000563297 I3L4J1 428 aa17.27■□□□□ 0.36
CLK3-211ENST00000563297 ABLIM1O14639 778 aa17.27■□□□□ 0.36
CLK3-211ENST00000563297 CCL16O15467 120 aa17.27■□□□□ 0.36
CLK3-211ENST00000563297 PROZP22891 400 aa17.27■□□□□ 0.36
CLK3-211ENST00000563297 TKTP29401 623 aaKnown RBP17.27■□□□□ 0.36
CLK3-211ENST00000563297 BRCC3P46736 316 aa17.27■□□□□ 0.36
CLK3-211ENST00000563297 YARSP54577 528 aaKnown RBP17.27■□□□□ 0.36
CLK3-211ENST00000563297 OSTNP61366 133 aa17.27■□□□□ 0.36
CLK3-211ENST00000563297 DMP1Q13316 513 aaPredicted RBP17.27■□□□□ 0.36
CLK3-211ENST00000563297 ZNF568Q3ZCX4 644 aa17.27■□□□□ 0.36
CLK3-211ENST00000563297 ASCL5Q7RTU5 278 aa17.27■□□□□ 0.36
CLK3-211ENST00000563297 SLC7A14Q8TBB6 771 aa17.27■□□□□ 0.36
CLK3-211ENST00000563297 GPR152Q8TDT2 470 aa17.27■□□□□ 0.36
CLK3-211ENST00000563297 DRC1Q96MC2 740 aa17.27■□□□□ 0.36
CLK3-211ENST00000563297 ZMAT2Q96NC0 199 aaKnown RBP17.27■□□□□ 0.36
CLK3-211ENST00000563297 MRPL4Q9BYD3 311 aaKnown RBP17.27■□□□□ 0.36
CLK3-211ENST00000563297 C17orf75Q9HAS0 396 aa17.27■□□□□ 0.36
CLK3-211ENST00000563297 CDH7Q9ULB5 785 aa17.27■□□□□ 0.36
CLK3-211ENST00000563297 POLIQ9UNA4 740 aa17.27■□□□□ 0.36
CLK3-211ENST00000563297 BACE2Q9Y5Z0 518 aa17.27■□□□□ 0.36
CLK3-211ENST00000563297 CDY1Q9Y6F8 540 aa17.27■□□□□ 0.36
CLK3-211ENST00000563297 NUMBLQ9Y6R0 609 aa17.27■□□□□ 0.36
CLK3-211ENST00000563297 VPS13AQ96RL7 3174 aa17.27■□□□□ 0.35
CLK3-211ENST00000563297 DMDP11532 3685 aa17.26■□□□□ 0.35
CLK3-211ENST00000563297 MYH11P35749 1972 aa17.26■□□□□ 0.35
CLK3-211ENST00000563297 SLC16A4O15374 487 aa17.26■□□□□ 0.35
CLK3-211ENST00000563297 TRAPPC3O43617 180 aa17.26■□□□□ 0.35
CLK3-211ENST00000563297 XYLBO75191 536 aa17.26■□□□□ 0.35
CLK3-211ENST00000563297 MCTP1Q6DN14 999 aa17.26■□□□□ 0.35
CLK3-211ENST00000563297 PARM1Q6UWI2 310 aa17.26■□□□□ 0.35
CLK3-211ENST00000563297 ANKS3Q6ZW76 656 aa17.26■□□□□ 0.35
CLK3-211ENST00000563297 RTL10Q7L3V2 364 aa17.26■□□□□ 0.35
CLK3-211ENST00000563297 ITFG1Q8TB96 612 aa17.26■□□□□ 0.35
CLK3-211ENST00000563297 FGF13Q92913 245 aa17.26■□□□□ 0.35
CLK3-211ENST00000563297 FGF14Q92915 247 aa17.26■□□□□ 0.35
CLK3-211ENST00000563297 DDX27Q96GQ7 796 aaKnown RBP17.26■□□□□ 0.35
CLK3-211ENST00000563297 ZBTB45Q96K62 511 aaPredicted RBP17.26■□□□□ 0.35
CLK3-211ENST00000563297 ACAP3Q96P50 834 aa17.26■□□□□ 0.35
CLK3-211ENST00000563297 PNMA5Q96PV4 448 aa17.26■□□□□ 0.35
CLK3-211ENST00000563297 TCHPQ9BT92 498 aa17.26■□□□□ 0.35
CLK3-211ENST00000563297 SLC2A4RGQ9NR83 387 aa17.26■□□□□ 0.35
CLK3-211ENST00000563297 TOPORSQ9NS56 1045 aaPredicted RBP17.26■□□□□ 0.35
CLK3-211ENST00000563297 POU2F2P09086 479 aa17.25■□□□□ 0.35
CLK3-211ENST00000563297 MCF2P10911 925 aa17.25■□□□□ 0.35
CLK3-211ENST00000563297 KCNE1P15382 129 aa17.25■□□□□ 0.35
CLK3-211ENST00000563297 GUCY2CP25092 1073 aa17.25■□□□□ 0.35
CLK3-211ENST00000563297 ATP2C1P98194 919 aaPredicted RBP17.25■□□□□ 0.35
CLK3-211ENST00000563297 ANGPT1Q15389 498 aa17.25■□□□□ 0.35
CLK3-211ENST00000563297 ZRSR1Q15695 479 aaKnown RBP17.25■□□□□ 0.35
CLK3-211ENST00000563297 RILPL1Q5EBL4 403 aa17.25■□□□□ 0.35
CLK3-211ENST00000563297 HYIQ5T013 277 aa17.25■□□□□ 0.35
CLK3-211ENST00000563297 PHLDB3Q6NSJ2 640 aa17.25■□□□□ 0.35
CLK3-211ENST00000563297 FRMD5Q7Z6J6 570 aa17.25■□□□□ 0.35
CLK3-211ENST00000563297 SYT2Q8N9I0 419 aaPredicted RBP17.25■□□□□ 0.35
CLK3-211ENST00000563297 SNX27Q96L92 541 aa17.25■□□□□ 0.35
CLK3-211ENST00000563297 TIPINQ9BVW5 301 aa17.25■□□□□ 0.35
CLK3-211ENST00000563297 TBC1D17Q9HA65 648 aa17.25■□□□□ 0.35
CLK3-211ENST00000563297 SLC38A7Q9NVC3 462 aa17.25■□□□□ 0.35
CLK3-211ENST00000563297 HCFC1R1Q9NWW0 138 aa17.25■□□□□ 0.35
CLK3-211ENST00000563297 DNMT3BQ9UBC3 853 aaKnown RBP17.25■□□□□ 0.35
CLK3-211ENST00000563297 KIF3AQ9Y496 699 aa17.25■□□□□ 0.35
CLK3-211ENST00000563297 PRR23AA6NEV1 266 aa17.24■□□□□ 0.35
CLK3-211ENST00000563297 MEFVO15553 781 aaPredicted RBP17.24■□□□□ 0.35
CLK3-211ENST00000563297 GPC5P78333 572 aa17.24■□□□□ 0.35
CLK3-211ENST00000563297 RAD51AP2Q09MP3 1159 aa17.24■□□□□ 0.35
CLK3-211ENST00000563297 RABEP1Q15276 862 aa17.24■□□□□ 0.35
CLK3-211ENST00000563297 MPZL3Q6UWV2 235 aa17.24■□□□□ 0.35
CLK3-211ENST00000563297 KCTD17Q8N5Z5 321 aa17.24■□□□□ 0.35
CLK3-211ENST00000563297 SPIRE2Q8WWL2 714 aa17.24■□□□□ 0.35
CLK3-211ENST00000563297 TMX3Q96JJ7 454 aa17.24■□□□□ 0.35
CLK3-211ENST00000563297 CACNA1IQ9P0X4 2223 aa17.24■□□□□ 0.35
CLK3-211ENST00000563297 MYH15Q9Y2K3 1946 aa17.23■□□□□ 0.35
CLK3-211ENST00000563297 PODXLO00592 558 aa17.23■□□□□ 0.35
CLK3-211ENST00000563297 TBC1D4O60343 1298 aa17.23■□□□□ 0.35
CLK3-211ENST00000563297 ABLIM3O94929 683 aa17.23■□□□□ 0.35
CLK3-211ENST00000563297 PLS3P13797 630 aa17.23■□□□□ 0.35
CLK3-211ENST00000563297 MRPL58Q14197 206 aaKnown RBP17.23■□□□□ 0.35
CLK3-211ENST00000563297 SLC10A6Q3KNW5 377 aa17.23■□□□□ 0.35
CLK3-211ENST00000563297 VARS2Q5ST30 1063 aaKnown RBP17.23■□□□□ 0.35
CLK3-211ENST00000563297 SLC8B1Q6J4K2 584 aa17.23■□□□□ 0.35
CLK3-211ENST00000563297 TMEM161BQ8NDZ6 487 aa17.23■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms