RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 CCDC169A6NNP5 214 aa20.88■□□□□ 0.93
VPS35-202ENST00000561713 MUTP22033 750 aa20.88■□□□□ 0.93
VPS35-202ENST00000561713 PEX3P56589 373 aa20.88■□□□□ 0.93
VPS35-202ENST00000561713 CREMQ03060 361 aa20.88■□□□□ 0.93
VPS35-202ENST00000561713 RAD51AP2Q09MP3 1159 aa20.88■□□□□ 0.93
VPS35-202ENST00000561713 CEP57Q86XR8 500 aa20.88■□□□□ 0.93
VPS35-202ENST00000561713 KIFAP3Q92845 792 aa20.88■□□□□ 0.93
VPS35-202ENST00000561713 PLIN2Q99541 437 aa20.88■□□□□ 0.93
VPS35-202ENST00000561713 HINFPQ9BQA5 517 aa20.88■□□□□ 0.93
VPS35-202ENST00000561713 CLSTN3Q9BQT9 956 aa20.88■□□□□ 0.93
VPS35-202ENST00000561713 GOLGA2P5Q9HBQ8 144 aa20.88■□□□□ 0.93
VPS35-202ENST00000561713 COL4A3Q01955 1670 aa20.87■□□□□ 0.93
VPS35-202ENST00000561713 MED19A0JLT2 244 aaPredicted RBP20.87■□□□□ 0.93
VPS35-202ENST00000561713 THP07101 528 aa20.87■□□□□ 0.93
VPS35-202ENST00000561713 GJB2P29033 226 aa20.87■□□□□ 0.93
VPS35-202ENST00000561713 STARD6P59095 220 aa20.87■□□□□ 0.93
VPS35-202ENST00000561713 OSTNP61366 133 aa20.87■□□□□ 0.93
VPS35-202ENST00000561713 MAPK7Q13164 816 aa20.87■□□□□ 0.93
VPS35-202ENST00000561713 DCAF4L1Q3SXM0 396 aa20.87■□□□□ 0.93
VPS35-202ENST00000561713 FAM171A1Q5VUB5 890 aa20.87■□□□□ 0.93
VPS35-202ENST00000561713 KRT79Q5XKE5 535 aa20.87■□□□□ 0.93
VPS35-202ENST00000561713 ZC3H14Q6PJT7 736 aaKnown RBP20.87■□□□□ 0.93
VPS35-202ENST00000561713 MAML2Q8IZL2 1156 aaPredicted RBP20.87■□□□□ 0.93
VPS35-202ENST00000561713 RAB34Q9BZG1 259 aa20.87■□□□□ 0.93
VPS35-202ENST00000561713 FBXW11Q9UKB1 542 aa20.87■□□□□ 0.93
VPS35-202ENST00000561713 CDH7Q9ULB5 785 aa20.87■□□□□ 0.93
VPS35-202ENST00000561713 ZFP37Q9Y6Q3 630 aaPredicted RBP20.87■□□□□ 0.93
VPS35-202ENST00000561713 HARSP12081 509 aaKnown RBP20.86■□□□□ 0.93
VPS35-202ENST00000561713 NPTX2P47972 431 aa20.86■□□□□ 0.93
VPS35-202ENST00000561713 SNW1Q13573 536 aaKnown RBP20.86■□□□□ 0.93
VPS35-202ENST00000561713 ZNF568Q3ZCX4 644 aa20.86■□□□□ 0.93
VPS35-202ENST00000561713 TAS1R3Q7RTX0 852 aa20.86■□□□□ 0.93
VPS35-202ENST00000561713 DGLUCYQ7Z3D6 616 aa20.86■□□□□ 0.93
VPS35-202ENST00000561713 DCLK2Q8N568 766 aa20.86■□□□□ 0.93
VPS35-202ENST00000561713 LNX1Q8TBB1 728 aaPredicted RBP20.86■□□□□ 0.93
VPS35-202ENST00000561713 TTPALQ9BTX7 342 aa20.86■□□□□ 0.93
VPS35-202ENST00000561713 CDT1Q9H211 546 aa20.86■□□□□ 0.93
VPS35-202ENST00000561713 NOTCH4Q99466 2003 aa20.86■□□□□ 0.93
VPS35-202ENST00000561713 OTOGLQ3ZCN5 2332 aa20.86■□□□□ 0.93
VPS35-202ENST00000561713 I3L4J1 428 aa20.85■□□□□ 0.93
VPS35-202ENST00000561713 CCL16O15467 120 aa20.85■□□□□ 0.93
VPS35-202ENST00000561713 ADAM12O43184 909 aa20.85■□□□□ 0.93
VPS35-202ENST00000561713 EFNA5P52803 228 aa20.85■□□□□ 0.93
VPS35-202ENST00000561713 ATP2C1P98194 919 aaPredicted RBP20.85■□□□□ 0.93
VPS35-202ENST00000561713 DMP1Q13316 513 aaPredicted RBP20.85■□□□□ 0.93
VPS35-202ENST00000561713 PSMD5Q16401 504 aa20.85■□□□□ 0.93
VPS35-202ENST00000561713 PPM1LQ5SGD2 360 aa20.85■□□□□ 0.93
VPS35-202ENST00000561713 RINT1Q6NUQ1 792 aa20.85■□□□□ 0.93
VPS35-202ENST00000561713 DTHD1Q6ZMT9 781 aa20.85■□□□□ 0.93
VPS35-202ENST00000561713 RUBCNQ92622 972 aa20.85■□□□□ 0.93
VPS35-202ENST00000561713 FGF13Q92913 245 aa20.85■□□□□ 0.93
VPS35-202ENST00000561713 SHDQ96IW2 340 aa20.85■□□□□ 0.93
VPS35-202ENST00000561713 PNMA5Q96PV4 448 aa20.85■□□□□ 0.93
VPS35-202ENST00000561713 DNM3Q9UQ16 869 aa20.85■□□□□ 0.93
VPS35-202ENST00000561713 MTF2Q9Y483 593 aaPredicted RBP20.85■□□□□ 0.93
VPS35-202ENST00000561713 CACNA1IQ9P0X4 2223 aa20.85■□□□□ 0.93
VPS35-202ENST00000561713 ANK1P16157 1881 aa20.84■□□□□ 0.93
VPS35-202ENST00000561713 VWA3AA6NCI4 1184 aa20.84■□□□□ 0.93
VPS35-202ENST00000561713 SFI1A8K8P3 1242 aa20.84■□□□□ 0.93
VPS35-202ENST00000561713 K7ERI5 159 aa20.84■□□□□ 0.93
VPS35-202ENST00000561713 C8AP07357 584 aa20.84■□□□□ 0.93
VPS35-202ENST00000561713 HNRNPA1P09651 372 aaKnown RBP eCLIP20.84■□□□□ 0.93
VPS35-202ENST00000561713 PRPHP41219 470 aa20.84■□□□□ 0.93
VPS35-202ENST00000561713 CACNB1Q02641 598 aaPredicted RBP20.84■□□□□ 0.93
VPS35-202ENST00000561713 PDIA5Q14554 519 aa20.84■□□□□ 0.93
VPS35-202ENST00000561713 LIN9Q5TKA1 542 aa20.84■□□□□ 0.93
VPS35-202ENST00000561713 C3orf58Q8NDZ4 430 aa20.84■□□□□ 0.93
VPS35-202ENST00000561713 ITFG1Q8TB96 612 aa20.84■□□□□ 0.93
VPS35-202ENST00000561713 PIK3R5Q8WYR1 880 aa20.84■□□□□ 0.93
VPS35-202ENST00000561713 PPP1R10Q96QC0 940 aaKnown RBP20.84■□□□□ 0.93
VPS35-202ENST00000561713 TARS2Q9BW92 718 aaKnown RBP20.84■□□□□ 0.93
VPS35-202ENST00000561713 ARHGAP28Q9P2N2 729 aa20.84■□□□□ 0.93
VPS35-202ENST00000561713 POLIQ9UNA4 740 aa20.84■□□□□ 0.93
VPS35-202ENST00000561713 KIF3AQ9Y496 699 aa20.84■□□□□ 0.93
VPS35-202ENST00000561713 FANCMQ8IYD8 2048 aa20.83■□□□□ 0.93
VPS35-202ENST00000561713 KANSL1LA0AUZ9 987 aa20.83■□□□□ 0.93
VPS35-202ENST00000561713 H3BQV1 296 aa20.83■□□□□ 0.93
VPS35-202ENST00000561713 LAD1O00515 517 aa20.83■□□□□ 0.93
VPS35-202ENST00000561713 SLC16A4O15374 487 aa20.83■□□□□ 0.93
VPS35-202ENST00000561713 SOX4Q06945 474 aaPredicted RBP20.83■□□□□ 0.93
VPS35-202ENST00000561713 C1orf186Q6ZWK4 172 aa20.83■□□□□ 0.93
VPS35-202ENST00000561713 SUMF1Q8NBK3 374 aa20.83■□□□□ 0.93
VPS35-202ENST00000561713 ACO2Q99798 780 aaKnown RBP20.83■□□□□ 0.93
VPS35-202ENST00000561713 DDX23Q9BUQ8 820 aaKnown RBP20.83■□□□□ 0.93
VPS35-202ENST00000561713 KMT5AQ9NQR1 393 aa20.83■□□□□ 0.93
VPS35-202ENST00000561713 TNFSF13BQ9Y275 285 aa20.83■□□□□ 0.93
VPS35-202ENST00000561713 CEP250Q9BV73 2442 aa20.82■□□□□ 0.92
VPS35-202ENST00000561713 NPHP3-ACAD11A0A0J9YXS1 232 aa20.82■□□□□ 0.92
VPS35-202ENST00000561713 BRCC3P46736 316 aa20.82■□□□□ 0.92
VPS35-202ENST00000561713 CLCNKBP51801 687 aa20.82■□□□□ 0.92
VPS35-202ENST00000561713 SLC44A4Q53GD3 710 aa20.82■□□□□ 0.92
VPS35-202ENST00000561713 RILPL1Q5EBL4 403 aa20.82■□□□□ 0.92
VPS35-202ENST00000561713 MTSS1LQ765P7 747 aa20.82■□□□□ 0.92
VPS35-202ENST00000561713 TMEM130Q8N3G9 435 aa20.82■□□□□ 0.92
VPS35-202ENST00000561713 SLC7A14Q8TBB6 771 aa20.82■□□□□ 0.92
VPS35-202ENST00000561713 DRC1Q96MC2 740 aa20.82■□□□□ 0.92
VPS35-202ENST00000561713 KXD1Q9BQD3 176 aa20.82■□□□□ 0.92
VPS35-202ENST00000561713 MRPL4Q9BYD3 311 aaKnown RBP20.82■□□□□ 0.92
VPS35-202ENST00000561713 SPATA6Q9NWH7 488 aaPredicted RBP20.82■□□□□ 0.92
VPS35-202ENST00000561713 HCFC1R1Q9NWW0 138 aa20.82■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms