RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-223ENST00000560858 RAPGEF3O95398 923 aa2.99□□□□□ -1.93
SPG11-223ENST00000560858 HSP90AB1P08238 724 aaKnown RBP2.99□□□□□ -1.93
SPG11-223ENST00000560858 TYRP1P17643 537 aa2.99□□□□□ -1.93
SPG11-223ENST00000560858 POU3F3P20264 500 aaPredicted RBP2.99□□□□□ -1.93
SPG11-223ENST00000560858 ZFP36P26651 326 aaKnown RBP2.99□□□□□ -1.93
SPG11-223ENST00000560858 KIR2DL3P43628 341 aa2.99□□□□□ -1.93
SPG11-223ENST00000560858 ALDH6A1Q02252 535 aaKnown RBP2.99□□□□□ -1.93
SPG11-223ENST00000560858 NHLH1Q02575 133 aa2.99□□□□□ -1.93
SPG11-223ENST00000560858 TMEM132BQ14DG7 1078 aa2.99□□□□□ -1.93
SPG11-223ENST00000560858 RABEP1Q15276 862 aa2.99□□□□□ -1.93
SPG11-223ENST00000560858 DDB1Q16531 1140 aa2.99□□□□□ -1.93
SPG11-223ENST00000560858 KLHL40Q2TBA0 621 aa2.99□□□□□ -1.93
SPG11-223ENST00000560858 TWISTNBQ3B726 338 aaPredicted RBP2.99□□□□□ -1.93
SPG11-223ENST00000560858 TTC22Q5TAA0 569 aa2.99□□□□□ -1.93
SPG11-223ENST00000560858 CLEC14AQ86T13 490 aa2.99□□□□□ -1.93
SPG11-223ENST00000560858 LRRC47Q8N1G4 583 aaKnown RBP2.99□□□□□ -1.93
SPG11-223ENST00000560858 TSPYL6Q8N831 410 aa2.99□□□□□ -1.93
SPG11-223ENST00000560858 ANKRD44Q8N8A2 993 aa2.99□□□□□ -1.93
SPG11-223ENST00000560858 ERCC4Q92889 916 aaPredicted RBP2.99□□□□□ -1.93
SPG11-223ENST00000560858 TNPO1Q92973 898 aaKnown RBP2.99□□□□□ -1.93
SPG11-223ENST00000560858 NKD2Q969F2 451 aaPredicted RBP2.99□□□□□ -1.93
SPG11-223ENST00000560858 E2F7Q96AV8 911 aa2.99□□□□□ -1.93
SPG11-223ENST00000560858 PPP1R9BQ96SB3 815 aa2.99□□□□□ -1.93
SPG11-223ENST00000560858 DUSP26Q9BV47 211 aa2.99□□□□□ -1.93
SPG11-223ENST00000560858 AKIP1Q9NQ31 210 aa2.99□□□□□ -1.93
SPG11-223ENST00000560858 TRPM5Q9NZQ8 1165 aa2.99□□□□□ -1.93
SPG11-223ENST00000560858 ANKARQ7Z5J8 1434 aa2.99□□□□□ -1.93
SPG11-223ENST00000560858 SCN11AQ9UI33 1791 aa2.99□□□□□ -1.93
SPG11-223ENST00000560858 TRPM3Q9HCF6 1732 aaPredicted RBP2.99□□□□□ -1.93
SPG11-223ENST00000560858 PLEKHG1Q9ULL1 1385 aa2.99□□□□□ -1.93
SPG11-223ENST00000560858 ABCC6O95255 1503 aa2.98□□□□□ -1.93
SPG11-223ENST00000560858 C5P01031 1676 aa2.98□□□□□ -1.93
SPG11-223ENST00000560858 LAMA4Q16363 1823 aa2.98□□□□□ -1.93
SPG11-223ENST00000560858 PTPRCP08575 1304 aa2.98□□□□□ -1.93
SPG11-223ENST00000560858 TTC21BQ7Z4L5 1316 aa2.98□□□□□ -1.93
SPG11-223ENST00000560858 MRC1P22897 1456 aa2.98□□□□□ -1.93
SPG11-223ENST00000560858 PIPSLA2A3N6 862 aa2.98□□□□□ -1.93
SPG11-223ENST00000560858 ARVCFO00192 962 aa2.98□□□□□ -1.93
SPG11-223ENST00000560858 CHL1O00533 1208 aa2.98□□□□□ -1.93
SPG11-223ENST00000560858 HOXA3O43365 443 aaPredicted RBP2.98□□□□□ -1.93
SPG11-223ENST00000560858 ESRRBO95718 433 aa2.98□□□□□ -1.93
SPG11-223ENST00000560858 IGLV2-14P01704 120 aa2.98□□□□□ -1.93
SPG11-223ENST00000560858 HLA-DOAP06340 250 aa2.98□□□□□ -1.93
SPG11-223ENST00000560858 VAMP1P23763 118 aa2.98□□□□□ -1.93
SPG11-223ENST00000560858 SDHAP31040 664 aa2.98□□□□□ -1.93
SPG11-223ENST00000560858 BMPR1AP36894 532 aa2.98□□□□□ -1.93
SPG11-223ENST00000560858 ETFBP38117 255 aa2.98□□□□□ -1.93
SPG11-223ENST00000560858 ZNF81P51508 661 aa2.98□□□□□ -1.93
SPG11-223ENST00000560858 ANTXR2P58335 489 aa2.98□□□□□ -1.93
SPG11-223ENST00000560858 GUCY1B3Q02153 619 aa2.98□□□□□ -1.93
SPG11-223ENST00000560858 CCDC173Q0VFZ6 552 aa2.98□□□□□ -1.93
SPG11-223ENST00000560858 FOXI1Q12951 378 aa2.98□□□□□ -1.93
SPG11-223ENST00000560858 ABHD17BQ5VST6 288 aa2.98□□□□□ -1.93
SPG11-223ENST00000560858 CEP85Q6P2H3 762 aa2.98□□□□□ -1.93
SPG11-223ENST00000560858 FAM83AQ86UY5 434 aa2.98□□□□□ -1.93
SPG11-223ENST00000560858 GAS2L3Q86XJ1 694 aa2.98□□□□□ -1.93
SPG11-223ENST00000560858 NME9Q86XW9 330 aa2.98□□□□□ -1.93
SPG11-223ENST00000560858 ZNF384Q8TF68 577 aa2.98□□□□□ -1.93
SPG11-223ENST00000560858 DYDC2Q96IM9 177 aa2.98□□□□□ -1.93
SPG11-223ENST00000560858 PDLIM2Q96JY6 352 aa2.98□□□□□ -1.93
SPG11-223ENST00000560858 PHACTR3Q96KR7 559 aa2.98□□□□□ -1.93
SPG11-223ENST00000560858 FOXB1Q99853 325 aa2.98□□□□□ -1.93
SPG11-223ENST00000560858 PDCD2LQ9BRP1 358 aa2.98□□□□□ -1.93
SPG11-223ENST00000560858 NDC1Q9BTX1 674 aa2.98□□□□□ -1.93
SPG11-223ENST00000560858 TGIF2Q9GZN2 237 aa2.98□□□□□ -1.93
SPG11-223ENST00000560858 ACBD3Q9H3P7 528 aa2.98□□□□□ -1.93
SPG11-223ENST00000560858 DCTPP1Q9H773 170 aa2.98□□□□□ -1.93
SPG11-223ENST00000560858 CAPN10Q9HC96 672 aa2.98□□□□□ -1.93
SPG11-223ENST00000560858 KIAA1586Q9HCI6 787 aa2.98□□□□□ -1.93
SPG11-223ENST00000560858 ST7Q9NRC1 585 aa2.98□□□□□ -1.93
SPG11-223ENST00000560858 KCMF1Q9P0J7 381 aa2.98□□□□□ -1.93
SPG11-223ENST00000560858 STK26Q9P289 416 aa2.98□□□□□ -1.93
SPG11-223ENST00000560858 SYNPO2Q9UMS6 1093 aa2.98□□□□□ -1.93
SPG11-223ENST00000560858 HDAC5Q9UQL6 1122 aa2.98□□□□□ -1.93
SPG11-223ENST00000560858 NCAPD2Q15021 1401 aa2.98□□□□□ -1.93
SPG11-223ENST00000560858 GLI3P10071 1580 aa2.98□□□□□ -1.93
SPG11-223ENST00000560858 SBNO1A3KN83 1393 aa2.98□□□□□ -1.93
SPG11-223ENST00000560858 FLT4P35916 1363 aa2.98□□□□□ -1.93
SPG11-223ENST00000560858 TNRQ92752 1358 aa2.98□□□□□ -1.93
SPG11-223ENST00000560858 TMEM2Q9UHN6 1383 aa2.98□□□□□ -1.93
SPG11-223ENST00000560858 SLIT3O75094 1523 aa2.98□□□□□ -1.93
SPG11-223ENST00000560858 AFDNP55196 1824 aaKnown RBP2.98□□□□□ -1.93
SPG11-223ENST00000560858 ARFGEF2Q9Y6D5 1785 aa2.97□□□□□ -1.93
SPG11-223ENST00000560858 AOX1Q06278 1338 aa2.97□□□□□ -1.93
SPG11-223ENST00000560858 SOS1Q07889 1333 aaPredicted RBP2.97□□□□□ -1.93
SPG11-223ENST00000560858 IGSF1Q8N6C5 1336 aa2.97□□□□□ -1.93
SPG11-223ENST00000560858 TTC21AQ8NDW8 1320 aa2.97□□□□□ -1.93
SPG11-223ENST00000560858 PKD1L3Q7Z443 1732 aa2.97□□□□□ -1.93
SPG11-223ENST00000560858 OVOS2A0A0G2JMS6 1433 aa2.97□□□□□ -1.93
SPG11-223ENST00000560858 RASSF10A6NK89 507 aa2.97□□□□□ -1.93
SPG11-223ENST00000560858 EPB41L2O43491 1005 aaKnown RBP2.97□□□□□ -1.93
SPG11-223ENST00000560858 HIP1RO75146 1068 aa2.97□□□□□ -1.93
SPG11-223ENST00000560858 NCR1O76036 304 aa2.97□□□□□ -1.93
SPG11-223ENST00000560858 BAG4O95429 457 aaKnown RBP2.97□□□□□ -1.93
SPG11-223ENST00000560858 RECKO95980 971 aa2.97□□□□□ -1.93
SPG11-223ENST00000560858 TPM2P07951 284 aa2.97□□□□□ -1.93
SPG11-223ENST00000560858 HMOX1P09601 288 aa2.97□□□□□ -1.93
SPG11-223ENST00000560858 PLA2G5P39877 138 aa2.97□□□□□ -1.93
SPG11-223ENST00000560858 TERF1P54274 439 aa2.97□□□□□ -1.93
SPG11-223ENST00000560858 NUCB2P80303 420 aa2.97□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms