RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 PLCB2Q00722 1185 aa12.87□□□□□ -0.35
LDLR-212ENST00000560467 STRN3Q13033 797 aa12.87□□□□□ -0.35
LDLR-212ENST00000560467 STK4Q13043 487 aa12.87□□□□□ -0.35
LDLR-212ENST00000560467 TARBP2Q15633 366 aaKnown RBP12.87□□□□□ -0.35
LDLR-212ENST00000560467 COBLL1Q53SF7 1204 aa12.87□□□□□ -0.35
LDLR-212ENST00000560467 ASTLQ6HA08 431 aaPredicted RBP12.87□□□□□ -0.35
LDLR-212ENST00000560467 TWF2Q6IBS0 349 aaKnown RBP12.87□□□□□ -0.35
LDLR-212ENST00000560467 TMC5Q6UXY8 1006 aa12.87□□□□□ -0.35
LDLR-212ENST00000560467 HS2ST1Q7LGA3 356 aa12.87□□□□□ -0.35
LDLR-212ENST00000560467 SFR1Q86XK3 245 aa12.87□□□□□ -0.35
LDLR-212ENST00000560467 FAM114A1Q8IWE2 563 aa12.87□□□□□ -0.35
LDLR-212ENST00000560467 ZDHHC14Q8IZN3 488 aa12.87□□□□□ -0.35
LDLR-212ENST00000560467 ADSSL1Q8N142 457 aa12.87□□□□□ -0.35
LDLR-212ENST00000560467 ZNF710Q8N1W2 664 aa12.87□□□□□ -0.35
LDLR-212ENST00000560467 DEPTORQ8TB45 409 aa12.87□□□□□ -0.35
LDLR-212ENST00000560467 ENOX1Q8TC92 643 aaKnown RBP12.87□□□□□ -0.35
LDLR-212ENST00000560467 SLC22A17Q8WUG5 538 aa12.87□□□□□ -0.35
LDLR-212ENST00000560467 SPIRE2Q8WWL2 714 aa12.87□□□□□ -0.35
LDLR-212ENST00000560467 NELFBQ8WX92 580 aa12.87□□□□□ -0.35
LDLR-212ENST00000560467 IGSF21Q96ID5 467 aa12.87□□□□□ -0.35
LDLR-212ENST00000560467 VN1R3Q9BXE9 311 aa12.87□□□□□ -0.35
LDLR-212ENST00000560467 GCOM2Q9BZD3 368 aaPredicted RBP12.87□□□□□ -0.35
LDLR-212ENST00000560467 DHX33Q9H6R0 707 aaKnown RBP12.87□□□□□ -0.35
LDLR-212ENST00000560467 GRPEL1Q9HAV7 217 aa12.87□□□□□ -0.35
LDLR-212ENST00000560467 CBX8Q9HC52 389 aa12.87□□□□□ -0.35
LDLR-212ENST00000560467 TBC1D13Q9NVG8 400 aa12.87□□□□□ -0.35
LDLR-212ENST00000560467 MAPK8IP1Q9UQF2 711 aa12.87□□□□□ -0.35
LDLR-212ENST00000560467 PIN4Q9Y237 131 aaKnown RBP12.87□□□□□ -0.35
LDLR-212ENST00000560467 DMDP11532 3685 aa12.86□□□□□ -0.35
LDLR-212ENST00000560467 A0A087WZ62 844 aa12.86□□□□□ -0.35
LDLR-212ENST00000560467 SFI1A8K8P3 1242 aa12.86□□□□□ -0.35
LDLR-212ENST00000560467 K7ENM7 598 aa12.86□□□□□ -0.35
LDLR-212ENST00000560467 EIF3DO15371 548 aaKnown RBP eCLIP12.86□□□□□ -0.35
LDLR-212ENST00000560467 TPM3P06753 285 aa12.86□□□□□ -0.35
LDLR-212ENST00000560467 CTSAP10619 480 aa12.86□□□□□ -0.35
LDLR-212ENST00000560467 NBL1P41271 181 aa12.86□□□□□ -0.35
LDLR-212ENST00000560467 PRCPP42785 496 aa12.86□□□□□ -0.35
LDLR-212ENST00000560467 EFNA5P52803 228 aa12.86□□□□□ -0.35
LDLR-212ENST00000560467 PEX3P56589 373 aa12.86□□□□□ -0.35
LDLR-212ENST00000560467 LRRC63Q05C16 580 aa12.86□□□□□ -0.35
LDLR-212ENST00000560467 NCBP1Q09161 790 aaKnown RBP12.86□□□□□ -0.35
LDLR-212ENST00000560467 BMS1Q14692 1282 aaKnown RBP12.86□□□□□ -0.35
LDLR-212ENST00000560467 ATAT1Q5SQI0 421 aa12.86□□□□□ -0.35
LDLR-212ENST00000560467 SPATA1Q5VX52 437 aa12.86□□□□□ -0.35
LDLR-212ENST00000560467 CWF19L1Q69YN2 538 aaKnown RBP12.86□□□□□ -0.35
LDLR-212ENST00000560467 FRMD5Q7Z6J6 570 aa12.86□□□□□ -0.35
LDLR-212ENST00000560467 DDX53Q86TM3 631 aaKnown RBP12.86□□□□□ -0.35
LDLR-212ENST00000560467 ZBTB8OSQ8IWT0 167 aa12.86□□□□□ -0.35
LDLR-212ENST00000560467 AOPEPQ8N6M6 819 aa12.86□□□□□ -0.35
LDLR-212ENST00000560467 HVCN1Q96D96 273 aa12.86□□□□□ -0.35
LDLR-212ENST00000560467 ACCSQ96QU6 501 aa12.86□□□□□ -0.35
LDLR-212ENST00000560467 CEP89Q96ST8 783 aa12.86□□□□□ -0.35
LDLR-212ENST00000560467 FDXACB1Q9BRP7 624 aaPredicted RBP12.86□□□□□ -0.35
LDLR-212ENST00000560467 GBP3Q9H0R5 595 aa12.86□□□□□ -0.35
LDLR-212ENST00000560467 POLR3FQ9H1D9 316 aaPredicted RBP12.86□□□□□ -0.35
LDLR-212ENST00000560467 RBSNQ9H1K0 784 aa12.86□□□□□ -0.35
LDLR-212ENST00000560467 MFSD1Q9H3U5 465 aa12.86□□□□□ -0.35
LDLR-212ENST00000560467 NRDE2Q9H7Z3 1164 aa12.86□□□□□ -0.35
LDLR-212ENST00000560467 DNAJB4Q9UDY4 337 aa12.86□□□□□ -0.35
LDLR-212ENST00000560467 CTNND2Q9UQB3 1225 aa12.86□□□□□ -0.35
LDLR-212ENST00000560467 GDAQ9Y2T3 454 aa12.86□□□□□ -0.35
LDLR-212ENST00000560467 UBE4BO95155 1302 aa12.86□□□□□ -0.35
LDLR-212ENST00000560467 EVPLQ92817 2033 aa12.85□□□□□ -0.35
LDLR-212ENST00000560467 PPP1R3GB7ZBB8 358 aa12.85□□□□□ -0.35
LDLR-212ENST00000560467 GALTP07902 379 aa12.85□□□□□ -0.35
LDLR-212ENST00000560467 SFPQP23246 707 aaKnown RBP eCLIP12.85□□□□□ -0.35
LDLR-212ENST00000560467 CCNE1P24864 410 aa12.85□□□□□ -0.35
LDLR-212ENST00000560467 SLC11A1P49279 550 aa12.85□□□□□ -0.35
LDLR-212ENST00000560467 SPAG1Q07617 926 aa12.85□□□□□ -0.35
LDLR-212ENST00000560467 PTPN14Q15678 1187 aa12.85□□□□□ -0.35
LDLR-212ENST00000560467 KNOP1Q1ED39 458 aaKnown RBP12.85□□□□□ -0.35
LDLR-212ENST00000560467 NOMO2Q5JPE7 1267 aa12.85□□□□□ -0.35
LDLR-212ENST00000560467 GLB1LQ6UWU2 654 aa12.85□□□□□ -0.35
LDLR-212ENST00000560467 PPP4R3CPQ6ZMV5 832 aa12.85□□□□□ -0.35
LDLR-212ENST00000560467 C11orf57Q6ZUT1 292 aaPredicted RBP12.85□□□□□ -0.35
LDLR-212ENST00000560467 ZNF720Q7Z2F6 126 aa12.85□□□□□ -0.35
LDLR-212ENST00000560467 KSR1Q8IVT5 923 aa12.85□□□□□ -0.35
LDLR-212ENST00000560467 SMYD4Q8IYR2 804 aaPredicted RBP12.85□□□□□ -0.35
LDLR-212ENST00000560467 FLCNQ8NFG4 579 aa12.85□□□□□ -0.35
LDLR-212ENST00000560467 TMEM143Q96AN5 459 aa12.85□□□□□ -0.35
LDLR-212ENST00000560467 C2orf40Q9H1Z8 148 aa12.85□□□□□ -0.35
LDLR-212ENST00000560467 CHST12Q9NRB3 414 aa12.85□□□□□ -0.35
LDLR-212ENST00000560467 CGNQ9P2M7 1197 aaKnown RBP12.85□□□□□ -0.35
LDLR-212ENST00000560467 SUCLA2Q9P2R7 463 aaPredicted RBP12.85□□□□□ -0.35
LDLR-212ENST00000560467 USTQ9Y2C2 406 aa12.85□□□□□ -0.35
LDLR-212ENST00000560467 IRAK3Q9Y616 596 aa12.85□□□□□ -0.35
LDLR-212ENST00000560467 IGKV6-21A0A0C4DH24 114 aa12.84□□□□□ -0.35
LDLR-212ENST00000560467 LRRIQ4A6NIV6 560 aa12.84□□□□□ -0.35
LDLR-212ENST00000560467 K7ERI5 159 aa12.84□□□□□ -0.35
LDLR-212ENST00000560467 OFD1O75665 1012 aa12.84□□□□□ -0.35
LDLR-212ENST00000560467 BMP6P22004 513 aa12.84□□□□□ -0.35
LDLR-212ENST00000560467 ARL2P36404 184 aa12.84□□□□□ -0.35
LDLR-212ENST00000560467 NAMPTP43490 491 aa12.84□□□□□ -0.35
LDLR-212ENST00000560467 NPTX2P47972 431 aa12.84□□□□□ -0.35
LDLR-212ENST00000560467 SNRPFP62306 86 aaKnown RBP12.84□□□□□ -0.35
LDLR-212ENST00000560467 RNASELQ05823 741 aaKnown RBP12.84□□□□□ -0.35
LDLR-212ENST00000560467 EHHADHQ08426 723 aa12.84□□□□□ -0.35
LDLR-212ENST00000560467 TMEM132AQ24JP5 1023 aa12.84□□□□□ -0.35
LDLR-212ENST00000560467 FILIP1LQ4L180 1135 aa12.84□□□□□ -0.35
LDLR-212ENST00000560467 CATSPER4Q7RTX7 472 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms