RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 CAGE1Q8TC20 777 aa12.13□□□□□ -0.47
USP3-218ENST00000560202 ERVK-5Q9HDB9 667 aa12.13□□□□□ -0.47
USP3-218ENST00000560202 CHST12Q9NRB3 414 aa12.13□□□□□ -0.47
USP3-218ENST00000560202 SNTG2Q9NY99 539 aa12.13□□□□□ -0.47
USP3-218ENST00000560202 APEX2Q9UBZ4 518 aa12.13□□□□□ -0.47
USP3-218ENST00000560202 PADI3Q9ULW8 664 aa12.13□□□□□ -0.47
USP3-218ENST00000560202 DAAM1Q9Y4D1 1078 aa12.13□□□□□ -0.47
USP3-218ENST00000560202 FHOD1Q9Y613 1164 aa12.13□□□□□ -0.47
USP3-218ENST00000560202 LRRC53A6NM62 1247 aa12.12□□□□□ -0.47
USP3-218ENST00000560202 FECHP22830 423 aa12.12□□□□□ -0.47
USP3-218ENST00000560202 CD52P31358 61 aa12.12□□□□□ -0.47
USP3-218ENST00000560202 ATN1P54259 1190 aaPredicted RBP12.12□□□□□ -0.47
USP3-218ENST00000560202 PAK2Q13177 524 aa12.12□□□□□ -0.47
USP3-218ENST00000560202 IQCEQ6IPM2 695 aa12.12□□□□□ -0.47
USP3-218ENST00000560202 PHLDB3Q6NSJ2 640 aa12.12□□□□□ -0.47
USP3-218ENST00000560202 PDXDC1Q6P996 788 aa12.12□□□□□ -0.47
USP3-218ENST00000560202 CD302Q8IX05 232 aa12.12□□□□□ -0.47
USP3-218ENST00000560202 EFCAB13Q8IY85 973 aa12.12□□□□□ -0.47
USP3-218ENST00000560202 NAA15Q9BXJ9 866 aaKnown RBP12.12□□□□□ -0.47
USP3-218ENST00000560202 NUCKS1Q9H1E3 243 aaKnown RBP12.12□□□□□ -0.47
USP3-218ENST00000560202 NXF3Q9H4D5 531 aaKnown RBP12.12□□□□□ -0.47
USP3-218ENST00000560202 ZNHIT6Q9NWK9 470 aaKnown RBP12.12□□□□□ -0.47
USP3-218ENST00000560202 DNAJC12Q9UKB3 198 aa12.12□□□□□ -0.47
USP3-218ENST00000560202 PYCARDQ9ULZ3 195 aa12.12□□□□□ -0.47
USP3-218ENST00000560202 PLAGL2Q9UPG8 496 aa12.12□□□□□ -0.47
USP3-218ENST00000560202 HES2Q9Y543 173 aa12.12□□□□□ -0.47
USP3-218ENST00000560202 TLR3O15455 904 aaKnown RBP12.11□□□□□ -0.47
USP3-218ENST00000560202 PQBP1O60828 265 aaKnown RBP12.11□□□□□ -0.47
USP3-218ENST00000560202 PHACTR2O75167 634 aa12.11□□□□□ -0.47
USP3-218ENST00000560202 VNN1O95497 513 aa12.11□□□□□ -0.47
USP3-218ENST00000560202 HLA-DRAP01903 254 aa12.11□□□□□ -0.47
USP3-218ENST00000560202 TMEM191BP0C7N4 346 aa12.11□□□□□ -0.47
USP3-218ENST00000560202 COL6A1P12109 1028 aa12.11□□□□□ -0.47
USP3-218ENST00000560202 ZSCAN20P17040 1043 aaPredicted RBP12.11□□□□□ -0.47
USP3-218ENST00000560202 RFX1P22670 979 aa12.11□□□□□ -0.47
USP3-218ENST00000560202 HNRNPH3P31942 346 aaKnown RBP12.11□□□□□ -0.47
USP3-218ENST00000560202 PIK3CAP42336 1068 aa12.11□□□□□ -0.47
USP3-218ENST00000560202 YARSP54577 528 aaKnown RBP12.11□□□□□ -0.47
USP3-218ENST00000560202 TFAMQ00059 246 aaKnown RBP12.11□□□□□ -0.47
USP3-218ENST00000560202 BFSP2Q13515 415 aa12.11□□□□□ -0.47
USP3-218ENST00000560202 JADE1Q6IE81 842 aa12.11□□□□□ -0.47
USP3-218ENST00000560202 WDR59Q6PJI9 974 aa12.11□□□□□ -0.47
USP3-218ENST00000560202 TRAPPC11Q7Z392 1133 aa12.11□□□□□ -0.47
USP3-218ENST00000560202 ANKRD33Q7Z3H0 272 aa12.11□□□□□ -0.47
USP3-218ENST00000560202 ANKLE1Q8NAG6 615 aa12.11□□□□□ -0.47
USP3-218ENST00000560202 DIS3LQ8TF46 1054 aaKnown RBP12.11□□□□□ -0.47
USP3-218ENST00000560202 ANKRD36BP1Q96IX9 119 aa12.11□□□□□ -0.47
USP3-218ENST00000560202 SPAG5Q96R06 1193 aa12.11□□□□□ -0.47
USP3-218ENST00000560202 MTMR12Q9C0I1 747 aa12.11□□□□□ -0.47
USP3-218ENST00000560202 PLEKHA5Q9HAU0 1116 aa12.11□□□□□ -0.47
USP3-218ENST00000560202 AJAP1Q9UKB5 411 aaPredicted RBP12.11□□□□□ -0.47
USP3-218ENST00000560202 IPPQ9Y573 584 aa12.11□□□□□ -0.47
USP3-218ENST00000560202 ARHGAP6O43182 974 aa12.1□□□□□ -0.47
USP3-218ENST00000560202 ZC3H11AO75152 810 aaKnown RBP eCLIP12.1□□□□□ -0.47
USP3-218ENST00000560202 TNNC2P02585 160 aa12.1□□□□□ -0.47
USP3-218ENST00000560202 NFICP08651 508 aa12.1□□□□□ -0.47
USP3-218ENST00000560202 SELPP16109 830 aa12.1□□□□□ -0.47
USP3-218ENST00000560202 JAM2P57087 298 aa12.1□□□□□ -0.47
USP3-218ENST00000560202 NCOA4Q13772 614 aa12.1□□□□□ -0.47
USP3-218ENST00000560202 RAPGEF1Q13905 1077 aa12.1□□□□□ -0.47
USP3-218ENST00000560202 MBTPS1Q14703 1052 aa12.1□□□□□ -0.47
USP3-218ENST00000560202 MEA1Q16626 185 aa12.1□□□□□ -0.47
USP3-218ENST00000560202 CYP26C1Q6V0L0 522 aa12.1□□□□□ -0.47
USP3-218ENST00000560202 LRRC8DQ7L1W4 858 aa12.1□□□□□ -0.47
USP3-218ENST00000560202 TMTC1Q8IUR5 882 aa12.1□□□□□ -0.47
USP3-218ENST00000560202 ARHGEF19Q8IW93 802 aa12.1□□□□□ -0.47
USP3-218ENST00000560202 SMG8Q8ND04 991 aaKnown RBP12.1□□□□□ -0.47
USP3-218ENST00000560202 SYN2Q92777 582 aaPredicted RBP12.1□□□□□ -0.47
USP3-218ENST00000560202 SNX27Q96L92 541 aa12.1□□□□□ -0.47
USP3-218ENST00000560202 NT5C1BQ96P26 610 aa12.1□□□□□ -0.47
USP3-218ENST00000560202 APOL6Q9BWW8 343 aa12.1□□□□□ -0.47
USP3-218ENST00000560202 STK33Q9BYT3 514 aa12.1□□□□□ -0.47
USP3-218ENST00000560202 UBE2TQ9NPD8 197 aaPredicted RBP12.1□□□□□ -0.47
USP3-218ENST00000560202 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.1□□□□□ -0.47
USP3-218ENST00000560202 MYO6Q9UM54 1294 aa12.1□□□□□ -0.47
USP3-218ENST00000560202 C2CD2Q9Y426 696 aa12.1□□□□□ -0.47
USP3-218ENST00000560202 PCDHB2Q9Y5E7 798 aa12.1□□□□□ -0.47
USP3-218ENST00000560202 RECQL4O94761 1208 aa12.1□□□□□ -0.47
USP3-218ENST00000560202 CST3P01034 146 aaPredicted RBP12.1□□□□□ -0.47
USP3-218ENST00000560202 AKAP5P24588 427 aa12.1□□□□□ -0.47
USP3-218ENST00000560202 DSC3Q14574 896 aa12.1□□□□□ -0.47
USP3-218ENST00000560202 DRAP1Q14919 205 aaPredicted RBP12.1□□□□□ -0.47
USP3-218ENST00000560202 TMEM132DQ14C87 1099 aa12.1□□□□□ -0.47
USP3-218ENST00000560202 WDR44Q5JSH3 913 aa12.1□□□□□ -0.47
USP3-218ENST00000560202 C1orf53Q5VUE5 145 aa12.1□□□□□ -0.47
USP3-218ENST00000560202 SFMBT2Q5VUG0 894 aa12.1□□□□□ -0.47
USP3-218ENST00000560202 E4F1Q66K89 784 aaPredicted RBP12.1□□□□□ -0.47
USP3-218ENST00000560202 ALKAL1Q6UXT8 129 aa12.1□□□□□ -0.47
USP3-218ENST00000560202 NT5DC4Q86YG4 428 aa12.1□□□□□ -0.47
USP3-218ENST00000560202 KIAA1524Q8TCG1 905 aa12.1□□□□□ -0.47
USP3-218ENST00000560202 TOX2Q96NM4 488 aa12.1□□□□□ -0.47
USP3-218ENST00000560202 CHP1Q99653 195 aa12.1□□□□□ -0.47
USP3-218ENST00000560202 PI4K2AQ9BTU6 479 aa12.1□□□□□ -0.47
USP3-218ENST00000560202 TMEM106CQ9BVX2 250 aa12.1□□□□□ -0.47
USP3-218ENST00000560202 RNF39Q9H2S5 420 aa12.1□□□□□ -0.47
USP3-218ENST00000560202 FAM105AQ9NUU6 356 aa12.1□□□□□ -0.47
USP3-218ENST00000560202 AIPL1Q9NZN9 384 aa12.1□□□□□ -0.47
USP3-218ENST00000560202 PARP2Q9UGN5 583 aa12.1□□□□□ -0.47
USP3-218ENST00000560202 SOWAHDA6NJG2 315 aa12.09□□□□□ -0.47
USP3-218ENST00000560202 DCDC2CA8MYV0 355 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms