RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 ZNF710Q8N1W2 664 aa13.66□□□□□ -0.22
USP3-213ENST00000559711 EPS8L1Q8TE68 723 aa13.66□□□□□ -0.22
USP3-213ENST00000559711 SCLT1Q96NL6 688 aa13.66□□□□□ -0.22
USP3-213ENST00000559711 CARD6Q9BX69 1037 aa13.66□□□□□ -0.22
USP3-213ENST00000559711 RPF1Q9H9Y2 349 aaKnown RBP13.66□□□□□ -0.22
USP3-213ENST00000559711 PCDHGC5Q9Y5F6 944 aa13.66□□□□□ -0.22
USP3-213ENST00000559711 C17orf102A2RUQ5 167 aa13.65□□□□□ -0.22
USP3-213ENST00000559711 PHACTR2O75167 634 aa13.65□□□□□ -0.22
USP3-213ENST00000559711 ERLIN2O94905 339 aa13.65□□□□□ -0.22
USP3-213ENST00000559711 ASS1P00966 412 aaKnown RBP13.65□□□□□ -0.22
USP3-213ENST00000559711 CST3P01034 146 aaPredicted RBP13.65□□□□□ -0.22
USP3-213ENST00000559711 GNAT1P11488 350 aa13.65□□□□□ -0.22
USP3-213ENST00000559711 CHRNB2P17787 502 aa13.65□□□□□ -0.22
USP3-213ENST00000559711 USP8P40818 1118 aa13.65□□□□□ -0.22
USP3-213ENST00000559711 CHMP4BP1P59074 171 aa13.65□□□□□ -0.22
USP3-213ENST00000559711 CACNB2Q08289 660 aaPredicted RBP13.65□□□□□ -0.22
USP3-213ENST00000559711 WHAMMP3Q1A5X7 153 aa13.65□□□□□ -0.22
USP3-213ENST00000559711 NOP9Q86U38 636 aaKnown RBP13.65□□□□□ -0.22
USP3-213ENST00000559711 TMEM192Q8IY95 271 aa13.65□□□□□ -0.22
USP3-213ENST00000559711 NME8Q8N427 588 aa13.65□□□□□ -0.22
USP3-213ENST00000559711 LRRN4CLQ8ND94 238 aa13.65□□□□□ -0.22
USP3-213ENST00000559711 SLC20A1Q8WUM9 679 aa13.65□□□□□ -0.22
USP3-213ENST00000559711 TSC1Q92574 1164 aa13.65□□□□□ -0.22
USP3-213ENST00000559711 DHX38Q92620 1227 aaKnown RBP13.65□□□□□ -0.22
USP3-213ENST00000559711 ELMO3Q96BJ8 720 aa13.65□□□□□ -0.22
USP3-213ENST00000559711 CPB2Q96IY4 423 aa13.65□□□□□ -0.22
USP3-213ENST00000559711 FAM49AQ9H0Q0 323 aaPredicted RBP13.65□□□□□ -0.22
USP3-213ENST00000559711 ASB7Q9H672 318 aa13.65□□□□□ -0.22
USP3-213ENST00000559711 MYADML2A6NDP7 307 aa13.64□□□□□ -0.23
USP3-213ENST00000559711 ENC1O14682 589 aa13.64□□□□□ -0.23
USP3-213ENST00000559711 TREHO43280 583 aa13.64□□□□□ -0.23
USP3-213ENST00000559711 BUB1O43683 1085 aa13.64□□□□□ -0.23
USP3-213ENST00000559711 TADA3O75528 432 aa13.64□□□□□ -0.23
USP3-213ENST00000559711 C6orf222P0C671 652 aaPredicted RBP13.64□□□□□ -0.23
USP3-213ENST00000559711 TMEM253P0C7T8 217 aa13.64□□□□□ -0.23
USP3-213ENST00000559711 CXCL8P10145 99 aa13.64□□□□□ -0.23
USP3-213ENST00000559711 GZMAP12544 262 aa13.64□□□□□ -0.23
USP3-213ENST00000559711 DARSP14868 501 aaKnown RBP13.64□□□□□ -0.23
USP3-213ENST00000559711 CYP11B1P15538 503 aa13.64□□□□□ -0.23
USP3-213ENST00000559711 PRLRP16471 622 aa13.64□□□□□ -0.23
USP3-213ENST00000559711 ACO1P21399 889 aaKnown RBP13.64□□□□□ -0.23
USP3-213ENST00000559711 TBXAS1P24557 533 aaPredicted RBP13.64□□□□□ -0.23
USP3-213ENST00000559711 HOXA11P31270 313 aaPredicted RBP13.64□□□□□ -0.23
USP3-213ENST00000559711 APLP1P51693 650 aa13.64□□□□□ -0.23
USP3-213ENST00000559711 GALCP54803 685 aa13.64□□□□□ -0.23
USP3-213ENST00000559711 OSTNP61366 133 aa13.64□□□□□ -0.23
USP3-213ENST00000559711 CUL2Q13617 745 aa13.64□□□□□ -0.23
USP3-213ENST00000559711 GNASQ5JWF2 1037 aa13.64□□□□□ -0.23
USP3-213ENST00000559711 SPOPLQ6IQ16 392 aa13.64□□□□□ -0.23
USP3-213ENST00000559711 SLC47A2Q86VL8 602 aa13.64□□□□□ -0.23
USP3-213ENST00000559711 PALB2Q86YC2 1186 aa13.64□□□□□ -0.23
USP3-213ENST00000559711 EFCAB13Q8IY85 973 aa13.64□□□□□ -0.23
USP3-213ENST00000559711 RPUSD2Q8IZ73 545 aaKnown RBP13.64□□□□□ -0.23
USP3-213ENST00000559711 MNS1Q8NEH6 495 aa13.64□□□□□ -0.23
USP3-213ENST00000559711 DDX1Q92499 740 aaKnown RBP13.64□□□□□ -0.23
USP3-213ENST00000559711 FAM212AQ96EL1 285 aa13.64□□□□□ -0.23
USP3-213ENST00000559711 MTG1Q9BT17 334 aaPredicted RBP13.64□□□□□ -0.23
USP3-213ENST00000559711 MTMR12Q9C0I1 747 aa13.64□□□□□ -0.23
USP3-213ENST00000559711 ISCUQ9H1K1 167 aa13.64□□□□□ -0.23
USP3-213ENST00000559711 CDHR5Q9HBB8 845 aa13.64□□□□□ -0.23
USP3-213ENST00000559711 SPC25Q9HBM1 224 aa13.64□□□□□ -0.23
USP3-213ENST00000559711 RNF186Q9NXI6 227 aa13.64□□□□□ -0.23
USP3-213ENST00000559711 HDAC6Q9UBN7 1215 aa13.64□□□□□ -0.23
USP3-213ENST00000559711 CNTN6Q9UQ52 1028 aa13.64□□□□□ -0.23
USP3-213ENST00000559711 NUB1Q9Y5A7 615 aa13.64□□□□□ -0.23
USP3-213ENST00000559711 SAR1BQ9Y6B6 198 aa13.64□□□□□ -0.23
USP3-213ENST00000559711 EFCAB8A8MWE9 144 aa13.63□□□□□ -0.23
USP3-213ENST00000559711 LACTBL1A8MY62 500 aa13.63□□□□□ -0.23
USP3-213ENST00000559711 MEFVO15553 781 aaPredicted RBP13.63□□□□□ -0.23
USP3-213ENST00000559711 EIF4BP23588 611 aaKnown RBP13.63□□□□□ -0.23
USP3-213ENST00000559711 BPIFB4P59827 614 aa13.63□□□□□ -0.23
USP3-213ENST00000559711 NOP14P78316 857 aaKnown RBP13.63□□□□□ -0.23
USP3-213ENST00000559711 ZNF200P98182 395 aaPredicted RBP13.63□□□□□ -0.23
USP3-213ENST00000559711 TFAMQ00059 246 aaKnown RBP13.63□□□□□ -0.23
USP3-213ENST00000559711 CDR2Q01850 454 aa13.63□□□□□ -0.23
USP3-213ENST00000559711 NCBP1Q09161 790 aaKnown RBP13.63□□□□□ -0.23
USP3-213ENST00000559711 TRIM32Q13049 653 aa13.63□□□□□ -0.23
USP3-213ENST00000559711 IFI16Q16666 785 aaKnown RBP13.63□□□□□ -0.23
USP3-213ENST00000559711 SGSM1Q2NKQ1 1148 aa13.63□□□□□ -0.23
USP3-213ENST00000559711 C7orf31Q8N865 590 aa13.63□□□□□ -0.23
USP3-213ENST00000559711 CEP112Q8N8E3 955 aa13.63□□□□□ -0.23
USP3-213ENST00000559711 PPP1R13LQ8WUF5 828 aa13.63□□□□□ -0.23
USP3-213ENST00000559711 DNAJB3Q8WWF6 145 aa13.63□□□□□ -0.23
USP3-213ENST00000559711 ANKRD36BP1Q96IX9 119 aa13.63□□□□□ -0.23
USP3-213ENST00000559711 PCDHB18PQ96TA0 734 aa13.63□□□□□ -0.23
USP3-213ENST00000559711 ARID3AQ99856 593 aa13.63□□□□□ -0.23
USP3-213ENST00000559711 ADPGKQ9BRR6 497 aa13.63□□□□□ -0.23
USP3-213ENST00000559711 IMPG2Q9BZV3 1241 aa13.63□□□□□ -0.23
USP3-213ENST00000559711 ANKRD62A6NC57 917 aa13.63□□□□□ -0.23
USP3-213ENST00000559711 TNNC2P02585 160 aa13.63□□□□□ -0.23
USP3-213ENST00000559711 TMEM191BP0C7N4 346 aa13.63□□□□□ -0.23
USP3-213ENST00000559711 RARBP10826 455 aa13.63□□□□□ -0.23
USP3-213ENST00000559711 PDE6CP51160 858 aa13.63□□□□□ -0.23
USP3-213ENST00000559711 NAP1L1P55209 391 aaKnown RBP13.63□□□□□ -0.23
USP3-213ENST00000559711 FMO1Q01740 532 aa13.63□□□□□ -0.23
USP3-213ENST00000559711 TMEM62Q0P6H9 643 aa13.63□□□□□ -0.23
USP3-213ENST00000559711 NAA30Q147X3 362 aaPredicted RBP13.63□□□□□ -0.23
USP3-213ENST00000559711 SLC10A6Q3KNW5 377 aa13.63□□□□□ -0.23
USP3-213ENST00000559711 DCAF4L1Q3SXM0 396 aa13.63□□□□□ -0.23
USP3-213ENST00000559711 SCARA3Q6AZY7 606 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms