RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 DENND2DQ9H6A0 471 aaPredicted RBP12.05□□□□□ -0.48
LDLR-208ENST00000558518 DBNDD1Q9H9R9 158 aa12.05□□□□□ -0.48
LDLR-208ENST00000558518 SAE1Q9UBE0 346 aaPredicted RBP12.05□□□□□ -0.48
LDLR-208ENST00000558518 SCAF8Q9UPN6 1271 aaKnown RBP12.05□□□□□ -0.48
LDLR-208ENST00000558518 CAPN9O14815 690 aa12.05□□□□□ -0.48
LDLR-208ENST00000558518 GYG2O15488 501 aa12.05□□□□□ -0.48
LDLR-208ENST00000558518 CDH16O75309 829 aa12.05□□□□□ -0.48
LDLR-208ENST00000558518 MAGEA4P43358 317 aa12.05□□□□□ -0.48
LDLR-208ENST00000558518 KLC1Q07866 573 aa12.05□□□□□ -0.48
LDLR-208ENST00000558518 RIPK1Q13546 671 aa12.05□□□□□ -0.48
LDLR-208ENST00000558518 GRAPQ13588 217 aa12.05□□□□□ -0.48
LDLR-208ENST00000558518 SPARCL1Q14515 664 aa12.05□□□□□ -0.48
LDLR-208ENST00000558518 ANO7Q6IWH7 933 aa12.05□□□□□ -0.48
LDLR-208ENST00000558518 GRAPLQ8TC17 118 aaPredicted RBP12.05□□□□□ -0.48
LDLR-208ENST00000558518 SEC14L1Q92503 715 aa12.05□□□□□ -0.48
LDLR-208ENST00000558518 LXNQ9BS40 222 aa12.05□□□□□ -0.48
LDLR-208ENST00000558518 GPR88Q9GZN0 384 aa12.05□□□□□ -0.48
LDLR-208ENST00000558518 FBXO6Q9NRD1 293 aaPredicted RBP12.05□□□□□ -0.48
LDLR-208ENST00000558518 DIS3Q9Y2L1 958 aaKnown RBP12.05□□□□□ -0.48
LDLR-208ENST00000558518 A0A1B0GVG6 124 aa12.04□□□□□ -0.48
LDLR-208ENST00000558518 CCDC160A6NGH7 325 aa12.04□□□□□ -0.48
LDLR-208ENST00000558518 SGK1O00141 431 aa12.04□□□□□ -0.48
LDLR-208ENST00000558518 TXNDC9O14530 226 aa12.04□□□□□ -0.48
LDLR-208ENST00000558518 KRT4P19013 534 aa12.04□□□□□ -0.48
LDLR-208ENST00000558518 CALB2P22676 271 aa12.04□□□□□ -0.48
LDLR-208ENST00000558518 SERPINB4P48594 390 aa12.04□□□□□ -0.48
LDLR-208ENST00000558518 PAPOLAP51003 745 aaKnown RBP12.04□□□□□ -0.48
LDLR-208ENST00000558518 BLMHQ13867 455 aa12.04□□□□□ -0.48
LDLR-208ENST00000558518 EFTUD2Q15029 972 aaKnown RBP eCLIP12.04□□□□□ -0.481e-6■■■■□ 19.3
LDLR-208ENST00000558518 KHDC1Q4VXA5 237 aaKnown RBP12.04□□□□□ -0.48
LDLR-208ENST00000558518 FYB2Q5VWT5 728 aa12.04□□□□□ -0.48
LDLR-208ENST00000558518 PPP1R21Q6ZMI0 780 aa12.04□□□□□ -0.48
LDLR-208ENST00000558518 GLIS1Q8NBF1 620 aa12.04□□□□□ -0.48
LDLR-208ENST00000558518 CFAP61Q8NHU2 1237 aa12.04□□□□□ -0.48
LDLR-208ENST00000558518 STK32AQ8WU08 396 aa12.04□□□□□ -0.48
LDLR-208ENST00000558518 ZC3H12CQ9C0D7 883 aaKnown RBP12.04□□□□□ -0.48
LDLR-208ENST00000558518 PCYOX1Q9UHG3 505 aa12.04□□□□□ -0.48
LDLR-208ENST00000558518 NVLO15381 856 aaKnown RBP12.04□□□□□ -0.48
LDLR-208ENST00000558518 SLC16A3O15427 465 aaKnown RBP12.04□□□□□ -0.48
LDLR-208ENST00000558518 ETS2P15036 469 aa12.04□□□□□ -0.48
LDLR-208ENST00000558518 HSPA6P17066 643 aa12.04□□□□□ -0.48
LDLR-208ENST00000558518 POLGP54098 1239 aaPredicted RBP12.04□□□□□ -0.48
LDLR-208ENST00000558518 ORC2Q13416 577 aaPredicted RBP12.04□□□□□ -0.48
LDLR-208ENST00000558518 KPNB1Q14974 876 aaKnown RBP12.04□□□□□ -0.48
LDLR-208ENST00000558518 CFAP157Q5JU67 520 aa12.04□□□□□ -0.48
LDLR-208ENST00000558518 DSTYKQ6XUX3 929 aa12.04□□□□□ -0.48
LDLR-208ENST00000558518 NLRP9Q7RTR0 991 aa12.04□□□□□ -0.48
LDLR-208ENST00000558518 ZNF720Q7Z2F6 126 aa12.04□□□□□ -0.48
LDLR-208ENST00000558518 CCDC125Q86Z20 511 aa12.04□□□□□ -0.48
LDLR-208ENST00000558518 MAGEB18Q96M61 343 aa12.04□□□□□ -0.48
LDLR-208ENST00000558518 SHCBP1LQ9BZQ2 653 aa12.04□□□□□ -0.48
LDLR-208ENST00000558518 NCANO14594 1321 aa12.04□□□□□ -0.48
LDLR-208ENST00000558518 COL18A1P39060 1754 aa12.04□□□□□ -0.48
LDLR-208ENST00000558518 hCG_1984214I3L0E3 225 aa12.04□□□□□ -0.48
LDLR-208ENST00000558518 SLITRK3O94933 977 aa12.04□□□□□ -0.48
LDLR-208ENST00000558518 KCNA3P22001 575 aa12.04□□□□□ -0.48
LDLR-208ENST00000558518 ADRA1DP25100 572 aa12.04□□□□□ -0.48
LDLR-208ENST00000558518 RANBP1P43487 201 aa12.04□□□□□ -0.48
LDLR-208ENST00000558518 PDIA2Q13087 525 aaKnown RBP12.04□□□□□ -0.48
LDLR-208ENST00000558518 MTFR1Q15390 333 aa12.04□□□□□ -0.48
LDLR-208ENST00000558518 SLC1A5Q15758 541 aa12.04□□□□□ -0.48
LDLR-208ENST00000558518 PCNX4Q63HM2 1172 aa12.04□□□□□ -0.48
LDLR-208ENST00000558518 FAM43BQ6ZT52 329 aaPredicted RBP12.04□□□□□ -0.48
LDLR-208ENST00000558518 ZNF713Q8N859 430 aaPredicted RBP12.04□□□□□ -0.48
LDLR-208ENST00000558518 ETNPPLQ8TBG4 499 aa12.04□□□□□ -0.48
LDLR-208ENST00000558518 EPS8L1Q8TE68 723 aa12.04□□□□□ -0.48
LDLR-208ENST00000558518 FHDC1Q9C0D6 1143 aaPredicted RBP12.04□□□□□ -0.48
LDLR-208ENST00000558518 WRAP73Q9P2S5 460 aaPredicted RBP12.04□□□□□ -0.48
LDLR-208ENST00000558518 POLLQ9UGP5 575 aa12.04□□□□□ -0.48
LDLR-208ENST00000558518 PARP4Q9UKK3 1724 aaKnown RBP12.03□□□□□ -0.48
LDLR-208ENST00000558518 ARP10275 920 aa12.03□□□□□ -0.48
LDLR-208ENST00000558518 SHMT1P34896 483 aa12.03□□□□□ -0.48
LDLR-208ENST00000558518 PEX5P50542 639 aa12.03□□□□□ -0.48
LDLR-208ENST00000558518 KDSRQ06136 332 aa12.03□□□□□ -0.48
LDLR-208ENST00000558518 BBS9Q3SYG4 887 aa12.03□□□□□ -0.48
LDLR-208ENST00000558518 PADI6Q6TGC4 694 aa12.03□□□□□ -0.48
LDLR-208ENST00000558518 BTNL9Q6UXG8 535 aa12.03□□□□□ -0.48
LDLR-208ENST00000558518 DPH6Q7L8W6 267 aa12.03□□□□□ -0.48
LDLR-208ENST00000558518 PPFIBP2Q8ND30 876 aa12.03□□□□□ -0.48
LDLR-208ENST00000558518 FAM161BQ96MY7 647 aa12.03□□□□□ -0.48
LDLR-208ENST00000558518 GBP5Q96PP8 586 aa12.03□□□□□ -0.48
LDLR-208ENST00000558518 LRRC4BQ9NT99 713 aa12.03□□□□□ -0.48
LDLR-208ENST00000558518 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.03□□□□□ -0.48
LDLR-208ENST00000558518 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP12.03□□□□□ -0.48
LDLR-208ENST00000558518 PEX11AO75192 247 aa12.03□□□□□ -0.48
LDLR-208ENST00000558518 ARSEP51690 589 aa12.03□□□□□ -0.48
LDLR-208ENST00000558518 CCNJLQ8IV13 435 aa12.03□□□□□ -0.48
LDLR-208ENST00000558518 CTAGE3PQ8IX95 158 aa12.03□□□□□ -0.48
LDLR-208ENST00000558518 ROPN1BQ9BZX4 212 aaPredicted RBP12.03□□□□□ -0.48
LDLR-208ENST00000558518 ROPN1Q9HAT0 212 aaPredicted RBP12.03□□□□□ -0.48
LDLR-208ENST00000558518 GINM1Q9NU53 330 aa12.03□□□□□ -0.48
LDLR-208ENST00000558518 HEY2Q9UBP5 337 aa12.03□□□□□ -0.48
LDLR-208ENST00000558518 NEU2Q9Y3R4 380 aa12.03□□□□□ -0.48
LDLR-208ENST00000558518 A0A1B0GUL6 1792 aa12.03□□□□□ -0.48
LDLR-208ENST00000558518 ATP9AO75110 1047 aa12.03□□□□□ -0.48
LDLR-208ENST00000558518 SNUPNO95149 360 aaKnown RBP12.03□□□□□ -0.48
LDLR-208ENST00000558518 GH2P01242 217 aa12.03□□□□□ -0.48
LDLR-208ENST00000558518 GAP43P17677 238 aa12.03□□□□□ -0.48
LDLR-208ENST00000558518 ITIH2P19823 946 aa12.03□□□□□ -0.48
LDLR-208ENST00000558518 SSTR1P30872 391 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms