RNA–Protein interactions for RNA: ENST00000558093.1

SPG11-206, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 526 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-206ENST00000558093 MIER2Q8N344 545 aa4.47□□□□□ -1.69
SPG11-206ENST00000558093 ZGPATQ8N5A5 531 aaKnown RBP4.47□□□□□ -1.69
SPG11-206ENST00000558093 OR56A1Q8NGH5 318 aa4.47□□□□□ -1.69
SPG11-206ENST00000558093 LENG9Q96B70 501 aa4.47□□□□□ -1.69
SPG11-206ENST00000558093 MYOCQ99972 504 aa4.47□□□□□ -1.69
SPG11-206ENST00000558093 KRTAP4-2Q9BYR5 136 aa4.47□□□□□ -1.69
SPG11-206ENST00000558093 SLC13A1Q9BZW2 595 aa4.47□□□□□ -1.69
SPG11-206ENST00000558093 CHST2Q9Y4C5 530 aa4.47□□□□□ -1.69
SPG11-206ENST00000558093 SPEF1Q9Y4P9 236 aa4.47□□□□□ -1.69
SPG11-206ENST00000558093 PCDHGA9Q9Y5G4 932 aaKnown RBP4.47□□□□□ -1.69
SPG11-206ENST00000558093 PCDHGA8Q9Y5G5 932 aa4.47□□□□□ -1.69
SPG11-206ENST00000558093 PCDHGA7Q9Y5G6 932 aa4.47□□□□□ -1.69
SPG11-206ENST00000558093 PCDHGA6Q9Y5G7 932 aa4.47□□□□□ -1.69
SPG11-206ENST00000558093 PCDHGA3Q9Y5H0 932 aa4.47□□□□□ -1.69
SPG11-206ENST00000558093 PCDHA13Q9Y5I0 950 aa4.47□□□□□ -1.69
SPG11-206ENST00000558093 TNKSO95271 1327 aa4.46□□□□□ -1.69
SPG11-206ENST00000558093 FZD9O00144 591 aa4.46□□□□□ -1.7
SPG11-206ENST00000558093 WNT10BO00744 389 aa4.46□□□□□ -1.7
SPG11-206ENST00000558093 DTNBO60941 627 aa4.46□□□□□ -1.7
SPG11-206ENST00000558093 AMY1AP04745 511 aa4.46□□□□□ -1.7
SPG11-206ENST00000558093 DDX6P26196 483 aaKnown RBP eCLIP4.46□□□□□ -1.7
SPG11-206ENST00000558093 WASP42768 502 aa4.46□□□□□ -1.7
SPG11-206ENST00000558093 PTTG1IPP53801 180 aa4.46□□□□□ -1.7
SPG11-206ENST00000558093 TGFB2P61812 414 aa4.46□□□□□ -1.7
SPG11-206ENST00000558093 IGBP1P78318 339 aa4.46□□□□□ -1.7
SPG11-206ENST00000558093 UBXN2BQ14CS0 331 aa4.46□□□□□ -1.7
SPG11-206ENST00000558093 SPDYE7PQ495Y7 208 aa4.46□□□□□ -1.7
SPG11-206ENST00000558093 FAM102AQ5T9C2 384 aaPredicted RBP4.46□□□□□ -1.7
SPG11-206ENST00000558093 AGAP9Q5VTM2 703 aa4.46□□□□□ -1.7
SPG11-206ENST00000558093 TSHZ3Q63HK5 1081 aa4.46□□□□□ -1.7
SPG11-206ENST00000558093 SEM1Q6ZVN7 128 aa4.46□□□□□ -1.7
SPG11-206ENST00000558093 MRGPREQ86SM8 312 aa4.46□□□□□ -1.7
SPG11-206ENST00000558093 RHOT2Q8IXI1 618 aa4.46□□□□□ -1.7
SPG11-206ENST00000558093 LARP4BQ92615 738 aaKnown RBP4.46□□□□□ -1.7
SPG11-206ENST00000558093 MYEOVQ96EZ4 313 aa4.46□□□□□ -1.7
SPG11-206ENST00000558093 CEP89Q96ST8 783 aa4.46□□□□□ -1.7
SPG11-206ENST00000558093 MLST8Q9BVC4 326 aa4.46□□□□□ -1.7
SPG11-206ENST00000558093 TEX101Q9BY14 249 aa4.46□□□□□ -1.7
SPG11-206ENST00000558093 C11orf54Q9H0W9 315 aaPredicted RBP4.46□□□□□ -1.7
SPG11-206ENST00000558093 RNPEPQ9H4A4 650 aa4.46□□□□□ -1.7
SPG11-206ENST00000558093 NOX1Q9Y5S8 564 aa4.46□□□□□ -1.7
SPG11-206ENST00000558093 FPGT-TNNI3KV9GXZ4 949 aa4.46□□□□□ -1.7
SPG11-206ENST00000558093 PNPLA7Q6ZV29 1317 aa4.46□□□□□ -1.7
SPG11-206ENST00000558093 TCRBV7S2A1N4TA0A589 114 aa4.45□□□□□ -1.7
SPG11-206ENST00000558093 CDHR4A6H8M9 788 aa4.45□□□□□ -1.7
SPG11-206ENST00000558093 TMEM191CA6NGB0 347 aa4.45□□□□□ -1.7
SPG11-206ENST00000558093 UNC119BA6NIH7 251 aa4.45□□□□□ -1.7
SPG11-206ENST00000558093 HTRA2O43464 458 aaPredicted RBP4.45□□□□□ -1.7
SPG11-206ENST00000558093 SGTAO43765 313 aa4.45□□□□□ -1.7
SPG11-206ENST00000558093 LPXNO60711 386 aa4.45□□□□□ -1.7
SPG11-206ENST00000558093 ERN1O75460 977 aaKnown RBP4.45□□□□□ -1.7
SPG11-206ENST00000558093 SLC6A2P23975 617 aa4.45□□□□□ -1.7
SPG11-206ENST00000558093 RECQLP46063 649 aaPredicted RBP4.45□□□□□ -1.7
SPG11-206ENST00000558093 INHBCP55103 352 aa4.45□□□□□ -1.7
SPG11-206ENST00000558093 ADKP55263 362 aaKnown RBP4.45□□□□□ -1.7
SPG11-206ENST00000558093 CTXN1P60606 82 aa4.45□□□□□ -1.7
SPG11-206ENST00000558093 EXOSC10Q01780 885 aaKnown RBP4.45□□□□□ -1.7
SPG11-206ENST00000558093 TARDBPQ13148 414 aaKnown RBP eCLIP4.45□□□□□ -1.7
SPG11-206ENST00000558093 IL10RAQ13651 578 aa4.45□□□□□ -1.7
SPG11-206ENST00000558093 C3orf36Q3SXR2 165 aa4.45□□□□□ -1.7
SPG11-206ENST00000558093 FOXR2Q6PJQ5 311 aa4.45□□□□□ -1.7
SPG11-206ENST00000558093 AMER2Q8N7J2 671 aa4.45□□□□□ -1.7
SPG11-206ENST00000558093 CPEB3Q8NE35 698 aaKnown RBP4.45□□□□□ -1.7
SPG11-206ENST00000558093 KAT5Q92993 513 aa4.45□□□□□ -1.7
SPG11-206ENST00000558093 COA7Q96BR5 231 aa4.45□□□□□ -1.7
SPG11-206ENST00000558093 CHMP4CQ96CF2 233 aa4.45□□□□□ -1.7
SPG11-206ENST00000558093 NEU1Q99519 415 aa4.45□□□□□ -1.7
SPG11-206ENST00000558093 PRRX2Q99811 253 aa4.45□□□□□ -1.7
SPG11-206ENST00000558093 CYP4F11Q9HBI6 524 aa4.45□□□□□ -1.7
SPG11-206ENST00000558093 FBXO34Q9NWN3 711 aa4.45□□□□□ -1.7
SPG11-206ENST00000558093 RNF181Q9P0P0 153 aa4.45□□□□□ -1.7
SPG11-206ENST00000558093 SLC23A1Q9UHI7 598 aa4.45□□□□□ -1.7
SPG11-206ENST00000558093 LIMCH1Q9UPQ0 1083 aa4.45□□□□□ -1.7
SPG11-206ENST00000558093 MAP3K2Q9Y2U5 619 aa4.45□□□□□ -1.7
SPG11-206ENST00000558093 LUC7L2Q9Y383 392 aaKnown RBP4.45□□□□□ -1.7
SPG11-206ENST00000558093 WDR33Q9C0J8 1336 aaKnown RBP4.45□□□□□ -1.7
SPG11-206ENST00000558093 CENPVL1A0A0U1RR11 272 aa4.44□□□□□ -1.7
SPG11-206ENST00000558093 A0A1B0GTW7 788 aa4.44□□□□□ -1.7
SPG11-206ENST00000558093 RAMP2O60895 175 aa4.44□□□□□ -1.7
SPG11-206ENST00000558093 HAUS5O94927 633 aa4.44□□□□□ -1.7
SPG11-206ENST00000558093 IL33O95760 270 aa4.44□□□□□ -1.7
SPG11-206ENST00000558093 CD1AP06126 327 aa4.44□□□□□ -1.7
SPG11-206ENST00000558093 CT47B1P0C2W7 299 aaPredicted RBP4.44□□□□□ -1.7
SPG11-206ENST00000558093 MTHFD1P11586 935 aaKnown RBP4.44□□□□□ -1.7
SPG11-206ENST00000558093 GUCY1B3Q02153 619 aa4.44□□□□□ -1.7
SPG11-206ENST00000558093 FSTL1Q12841 308 aa4.44□□□□□ -1.7
SPG11-206ENST00000558093 RAB39AQ14964 217 aa4.44□□□□□ -1.7
SPG11-206ENST00000558093 ODF1Q14990 250 aa4.44□□□□□ -1.7
SPG11-206ENST00000558093 BEAN1Q3B7T3 259 aa4.44□□□□□ -1.7
SPG11-206ENST00000558093 ZNF627Q7L945 461 aa4.44□□□□□ -1.7
SPG11-206ENST00000558093 MRGPRGQ86SM5 289 aa4.44□□□□□ -1.7
SPG11-206ENST00000558093 MAPKAPK5Q8IW41 473 aa4.44□□□□□ -1.7
SPG11-206ENST00000558093 FITM2Q8N6M3 262 aa4.44□□□□□ -1.7
SPG11-206ENST00000558093 NLGN4YQ8NFZ3 816 aaPredicted RBP4.44□□□□□ -1.7
SPG11-206ENST00000558093 TBC1D15Q8TC07 691 aa4.44□□□□□ -1.7
SPG11-206ENST00000558093 RNF31Q96EP0 1072 aa4.44□□□□□ -1.7
SPG11-206ENST00000558093 CLPTM1LQ96KA5 538 aa4.44□□□□□ -1.7
SPG11-206ENST00000558093 ZSWIM1Q9BR11 485 aa4.44□□□□□ -1.7
SPG11-206ENST00000558093 TTPALQ9BTX7 342 aa4.44□□□□□ -1.7
SPG11-206ENST00000558093 PACSIN1Q9BY11 444 aa4.44□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms