RNA–Protein interactions for RNA: ENST00000558088.1

VPS13C-205, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 549 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-205ENST00000558088 MATN4O95460 622 aa3.84□□□□□ -1.79
VPS13C-205ENST00000558088 ELANEP08246 267 aa3.84□□□□□ -1.79
VPS13C-205ENST00000558088 HSD11B2P80365 405 aa3.84□□□□□ -1.79
VPS13C-205ENST00000558088 CDK17Q00537 523 aa3.84□□□□□ -1.79
VPS13C-205ENST00000558088 AFMIDQ63HM1 303 aa3.84□□□□□ -1.79
VPS13C-205ENST00000558088 BHLHA9Q7RTU4 235 aa3.84□□□□□ -1.79
VPS13C-205ENST00000558088 GRASPQ7Z6J2 395 aaPredicted RBP3.84□□□□□ -1.79
VPS13C-205ENST00000558088 PQLC1Q8N2U9 271 aa3.84□□□□□ -1.79
VPS13C-205ENST00000558088 LEO1Q8WVC0 666 aaPredicted RBP3.84□□□□□ -1.79
VPS13C-205ENST00000558088 KLK15Q9H2R5 256 aa3.84□□□□□ -1.79
VPS13C-205ENST00000558088 PRDM12Q9H4Q4 367 aa3.84□□□□□ -1.79
VPS13C-205ENST00000558088 LANCL2Q9NS86 450 aa3.84□□□□□ -1.79
VPS13C-205ENST00000558088 FANCLQ9NW38 375 aa3.84□□□□□ -1.79
VPS13C-205ENST00000558088 KCTD5Q9NXV2 234 aa3.84□□□□□ -1.79
VPS13C-205ENST00000558088 SALL3Q9BXA9 1300 aa3.84□□□□□ -1.79
VPS13C-205ENST00000558088 TRGV11A0A075B6L2 103 aa3.83□□□□□ -1.8
VPS13C-205ENST00000558088 CCDC151A5D8V7 595 aa3.83□□□□□ -1.8
VPS13C-205ENST00000558088 ULK1O75385 1050 aa3.83□□□□□ -1.8
VPS13C-205ENST00000558088 CDC45O75419 566 aa3.83□□□□□ -1.8
VPS13C-205ENST00000558088 ALAS1P13196 640 aa3.83□□□□□ -1.8
VPS13C-205ENST00000558088 MTHFD2P13995 350 aa3.83□□□□□ -1.8
VPS13C-205ENST00000558088 ENPP1P22413 925 aa3.83□□□□□ -1.8
VPS13C-205ENST00000558088 GCSHP23434 173 aa3.83□□□□□ -1.8
VPS13C-205ENST00000558088 SESN3P58005 492 aa3.83□□□□□ -1.8
VPS13C-205ENST00000558088 SRSF4Q08170 494 aaKnown RBP3.83□□□□□ -1.8
VPS13C-205ENST00000558088 FOXF2Q12947 444 aa3.83□□□□□ -1.8
VPS13C-205ENST00000558088 UBXN2BQ14CS0 331 aa3.83□□□□□ -1.8
VPS13C-205ENST00000558088 TKFCQ3LXA3 575 aa3.83□□□□□ -1.8
VPS13C-205ENST00000558088 CCDC144BQ3MJ40 725 aa3.83□□□□□ -1.8
VPS13C-205ENST00000558088 PTF1AQ7RTS3 328 aa3.83□□□□□ -1.8
VPS13C-205ENST00000558088 NPM2Q86SE8 214 aaKnown RBP3.83□□□□□ -1.8
VPS13C-205ENST00000558088 FBXO18Q8NFZ0 1043 aa3.83□□□□□ -1.8
VPS13C-205ENST00000558088 FATE1Q969F0 183 aa3.83□□□□□ -1.8
VPS13C-205ENST00000558088 PDLIM2Q96JY6 352 aa3.83□□□□□ -1.8
VPS13C-205ENST00000558088 RNPC3Q96LT9 517 aaKnown RBP3.83□□□□□ -1.8
VPS13C-205ENST00000558088 ALG13Q9NP73 1137 aaKnown RBP3.83□□□□□ -1.8
VPS13C-205ENST00000558088 TMEM140Q9NV12 185 aa3.83□□□□□ -1.8
VPS13C-205ENST00000558088 FOXJ2Q9P0K8 574 aa3.83□□□□□ -1.8
VPS13C-205ENST00000558088 EDARQ9UNE0 448 aa3.83□□□□□ -1.8
VPS13C-205ENST00000558088 ARHGEF17Q96PE2 2063 aaPredicted RBP3.83□□□□□ -1.8
VPS13C-205ENST00000558088 ATRNL1Q5VV63 1379 aa3.82□□□□□ -1.8
VPS13C-205ENST00000558088 PNPLA7Q6ZV29 1317 aa3.82□□□□□ -1.8
VPS13C-205ENST00000558088 DNAJC9-AS1A6NH13 148 aa3.82□□□□□ -1.8
VPS13C-205ENST00000558088 LRRC3CA6NJW4 275 aa3.82□□□□□ -1.8
VPS13C-205ENST00000558088 PROB1E7EW31 1015 aa3.82□□□□□ -1.8
VPS13C-205ENST00000558088 MGST3O14880 152 aa3.82□□□□□ -1.8
VPS13C-205ENST00000558088 VAV2P52735 878 aa3.82□□□□□ -1.8
VPS13C-205ENST00000558088 CCT2P78371 535 aaKnown RBP3.82□□□□□ -1.8
VPS13C-205ENST00000558088 CYP2A13Q16696 494 aa3.82□□□□□ -1.8
VPS13C-205ENST00000558088 TAF7LQ5H9L4 462 aa3.82□□□□□ -1.8
VPS13C-205ENST00000558088 MUM1L1Q5H9M0 696 aa3.82□□□□□ -1.8
VPS13C-205ENST00000558088 KIAA1614Q5VZ46 1190 aa3.82□□□□□ -1.8
VPS13C-205ENST00000558088 ZNF529Q6P280 563 aa3.82□□□□□ -1.8
VPS13C-205ENST00000558088 SCARB1Q8WTV0 552 aa3.82□□□□□ -1.8
VPS13C-205ENST00000558088 AUTS2Q8WXX7 1259 aa3.82□□□□□ -1.8
VPS13C-205ENST00000558088 UROC1Q96N76 676 aa3.82□□□□□ -1.8
VPS13C-205ENST00000558088 MED15Q96RN5 788 aa3.82□□□□□ -1.8
VPS13C-205ENST00000558088 GREM2Q9H772 168 aa3.82□□□□□ -1.8
VPS13C-205ENST00000558088 TOPORSQ9NS56 1045 aaPredicted RBP3.82□□□□□ -1.8
VPS13C-205ENST00000558088 RBM12Q9NTZ6 932 aaKnown RBP3.82□□□□□ -1.8
VPS13C-205ENST00000558088 ASB6Q9NWX5 421 aa3.82□□□□□ -1.8
VPS13C-205ENST00000558088 USP25Q9UHP3 1055 aa3.82□□□□□ -1.8
VPS13C-205ENST00000558088 COL11A2P13942 1736 aaPredicted RBP3.81□□□□□ -1.8
VPS13C-205ENST00000558088 AATKQ6ZMQ8 1374 aa3.81□□□□□ -1.8
VPS13C-205ENST00000558088 ENDOD1O94919 500 aa3.81□□□□□ -1.8
VPS13C-205ENST00000558088 CKBP12277 381 aa3.81□□□□□ -1.8
VPS13C-205ENST00000558088 GPD1P21695 349 aa3.81□□□□□ -1.8
VPS13C-205ENST00000558088 CTGFP29279 349 aa3.81□□□□□ -1.8
VPS13C-205ENST00000558088 SREBF1P36956 1147 aa3.81□□□□□ -1.8
VPS13C-205ENST00000558088 ZNF81P51508 661 aa3.81□□□□□ -1.8
VPS13C-205ENST00000558088 MRPS9P82933 396 aaKnown RBP3.81□□□□□ -1.8
VPS13C-205ENST00000558088 PDCD1Q15116 288 aa3.81□□□□□ -1.8
VPS13C-205ENST00000558088 ATP2B3Q16720 1220 aa3.81□□□□□ -1.8
VPS13C-205ENST00000558088 OTUD7BQ6GQQ9 843 aa3.81□□□□□ -1.8
VPS13C-205ENST00000558088 LNX2Q8N448 690 aa3.81□□□□□ -1.8
VPS13C-205ENST00000558088 PNKPQ96T60 521 aa3.81□□□□□ -1.8
VPS13C-205ENST00000558088 TTC1Q99614 292 aa3.81□□□□□ -1.8
VPS13C-205ENST00000558088 ADI1Q9BV57 179 aa3.81□□□□□ -1.8
VPS13C-205ENST00000558088 ACE2Q9BYF1 805 aaPredicted RBP3.81□□□□□ -1.8
VPS13C-205ENST00000558088 IFT22Q9H7X7 185 aa3.81□□□□□ -1.8
VPS13C-205ENST00000558088 UNKLQ9H9P5 680 aaKnown RBP3.81□□□□□ -1.8
VPS13C-205ENST00000558088 CPNE5Q9HCH3 593 aa3.81□□□□□ -1.8
VPS13C-205ENST00000558088 FAM30AQ9NZY2 134 aa3.81□□□□□ -1.8
VPS13C-205ENST00000558088 GSG1L2A8MUP6 293 aa3.8□□□□□ -1.8
VPS13C-205ENST00000558088 ZEB2O60315 1214 aa3.8□□□□□ -1.8
VPS13C-205ENST00000558088 C1QL1O75973 258 aa3.8□□□□□ -1.8
VPS13C-205ENST00000558088 FOLR3P41439 243 aa3.8□□□□□ -1.8
VPS13C-205ENST00000558088 ALDH1A3P47895 512 aa3.8□□□□□ -1.8
VPS13C-205ENST00000558088 CREMQ03060 361 aa3.8□□□□□ -1.8
VPS13C-205ENST00000558088 DHCR24Q15392 516 aa3.8□□□□□ -1.8
VPS13C-205ENST00000558088 ADRM1Q16186 407 aa3.8□□□□□ -1.8
VPS13C-205ENST00000558088 Q6ZVL8 140 aa3.8□□□□□ -1.8
VPS13C-205ENST00000558088 FITM2Q8N6M3 262 aa3.8□□□□□ -1.8
VPS13C-205ENST00000558088 SSH3Q8TE77 659 aa3.8□□□□□ -1.8
VPS13C-205ENST00000558088 NUP133Q8WUM0 1156 aa3.8□□□□□ -1.8
VPS13C-205ENST00000558088 CASKIN2Q8WXE0 1202 aa3.8□□□□□ -1.8
VPS13C-205ENST00000558088 STON2Q8WXE9 905 aa3.8□□□□□ -1.8
VPS13C-205ENST00000558088 UBXN4Q92575 508 aa3.8□□□□□ -1.8
VPS13C-205ENST00000558088 CYFIP2Q96F07 1278 aa3.8□□□□□ -1.8
VPS13C-205ENST00000558088 IFT122Q9HBG6 1241 aa3.8□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms