RNA–Protein interactions for RNA: ENST00000557455.1

CCDC88C-213, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 811 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-213ENST00000557455 AXDND1Q5T1B0 1012 aaPredicted RBP12.15□□□□□ -0.46
CCDC88C-213ENST00000557455 MCTP1Q6DN14 999 aa12.15□□□□□ -0.46
CCDC88C-213ENST00000557455 RINT1Q6NUQ1 792 aa12.15□□□□□ -0.46
CCDC88C-213ENST00000557455 CCDC105Q8IYK2 499 aa12.15□□□□□ -0.46
CCDC88C-213ENST00000557455 CEP120Q8N960 986 aa12.15□□□□□ -0.46
CCDC88C-213ENST00000557455 SLC7A14Q8TBB6 771 aa12.15□□□□□ -0.46
CCDC88C-213ENST00000557455 GPR152Q8TDT2 470 aa12.15□□□□□ -0.46
CCDC88C-213ENST00000557455 TCHPQ9BT92 498 aa12.15□□□□□ -0.46
CCDC88C-213ENST00000557455 RUSC1Q9BVN2 902 aa12.15□□□□□ -0.46
CCDC88C-213ENST00000557455 CDT1Q9H211 546 aa12.15□□□□□ -0.46
CCDC88C-213ENST00000557455 C17orf75Q9HAS0 396 aa12.15□□□□□ -0.46
CCDC88C-213ENST00000557455 GOLGA2P5Q9HBQ8 144 aa12.15□□□□□ -0.46
CCDC88C-213ENST00000557455 PTPRHQ9HD43 1115 aa12.15□□□□□ -0.46
CCDC88C-213ENST00000557455 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.15□□□□□ -0.46
CCDC88C-213ENST00000557455 CDH7Q9ULB5 785 aa12.15□□□□□ -0.46
CCDC88C-213ENST00000557455 RBM19Q9Y4C8 960 aaKnown RBP12.15□□□□□ -0.46
CCDC88C-213ENST00000557455 CDY1Q9Y6F8 540 aa12.15□□□□□ -0.46
CCDC88C-213ENST00000557455 NUMBLQ9Y6R0 609 aa12.15□□□□□ -0.46
CCDC88C-213ENST00000557455 I3L4J1 428 aa12.14□□□□□ -0.47
CCDC88C-213ENST00000557455 TKTP29401 623 aaKnown RBP12.14□□□□□ -0.47
CCDC88C-213ENST00000557455 BRCC3P46736 316 aa12.14□□□□□ -0.47
CCDC88C-213ENST00000557455 NTHL1P78549 312 aa12.14□□□□□ -0.47
CCDC88C-213ENST00000557455 HTR4Q13639 388 aa12.14□□□□□ -0.47
CCDC88C-213ENST00000557455 UVSSAQ2YD98 709 aa12.14□□□□□ -0.47
CCDC88C-213ENST00000557455 RILPL1Q5EBL4 403 aa12.14□□□□□ -0.47
CCDC88C-213ENST00000557455 CD300LGQ6UXG3 332 aa12.14□□□□□ -0.47
CCDC88C-213ENST00000557455 ALKAL1Q6UXT8 129 aa12.14□□□□□ -0.47
CCDC88C-213ENST00000557455 ANKS3Q6ZW76 656 aa12.14□□□□□ -0.47
CCDC88C-213ENST00000557455 C1orf186Q6ZWK4 172 aa12.14□□□□□ -0.47
CCDC88C-213ENST00000557455 TAS1R3Q7RTX0 852 aa12.14□□□□□ -0.47
CCDC88C-213ENST00000557455 DAW1Q8N136 415 aa12.14□□□□□ -0.47
CCDC88C-213ENST00000557455 DTWD2Q8NBA8 298 aa12.14□□□□□ -0.47
CCDC88C-213ENST00000557455 ST13P5Q8NFI4 369 aaPredicted RBP12.14□□□□□ -0.47
CCDC88C-213ENST00000557455 DDX27Q96GQ7 796 aaKnown RBP12.14□□□□□ -0.47
CCDC88C-213ENST00000557455 ACAP3Q96P50 834 aa12.14□□□□□ -0.47
CCDC88C-213ENST00000557455 TIPINQ9BVW5 301 aa12.14□□□□□ -0.47
CCDC88C-213ENST00000557455 TARS2Q9BW92 718 aaKnown RBP12.14□□□□□ -0.47
CCDC88C-213ENST00000557455 SLC38A7Q9NVC3 462 aa12.14□□□□□ -0.47
CCDC88C-213ENST00000557455 ARHGAP28Q9P2N2 729 aa12.14□□□□□ -0.47
CCDC88C-213ENST00000557455 MTRRQ9UBK8 725 aa12.14□□□□□ -0.47
CCDC88C-213ENST00000557455 KCNG1Q9UIX4 513 aa12.14□□□□□ -0.47
CCDC88C-213ENST00000557455 BACE2Q9Y5Z0 518 aa12.14□□□□□ -0.47
CCDC88C-213ENST00000557455 NOTCH4Q99466 2003 aa12.14□□□□□ -0.47
CCDC88C-213ENST00000557455 MIA3Q5JRA6 1907 aa12.13□□□□□ -0.47
CCDC88C-213ENST00000557455 VPS13AQ96RL7 3174 aa12.13□□□□□ -0.47
CCDC88C-213ENST00000557455 SFI1A8K8P3 1242 aa12.13□□□□□ -0.47
CCDC88C-213ENST00000557455 SLC16A4O15374 487 aa12.13□□□□□ -0.47
CCDC88C-213ENST00000557455 POU2F2P09086 479 aa12.13□□□□□ -0.47
CCDC88C-213ENST00000557455 MCF2P10911 925 aa12.13□□□□□ -0.47
CCDC88C-213ENST00000557455 PROZP22891 400 aa12.13□□□□□ -0.47
CCDC88C-213ENST00000557455 SOX4Q06945 474 aaPredicted RBP12.13□□□□□ -0.47
CCDC88C-213ENST00000557455 RAD51AP2Q09MP3 1159 aa12.13□□□□□ -0.47
CCDC88C-213ENST00000557455 STRN3Q13033 797 aa12.13□□□□□ -0.47
CCDC88C-213ENST00000557455 MAPK7Q13164 816 aa12.13□□□□□ -0.47
CCDC88C-213ENST00000557455 RABEP1Q15276 862 aa12.13□□□□□ -0.47
CCDC88C-213ENST00000557455 ANGPT1Q15389 498 aa12.13□□□□□ -0.47
CCDC88C-213ENST00000557455 XKR4Q5GH76 650 aa12.13□□□□□ -0.47
CCDC88C-213ENST00000557455 PARM1Q6UWI2 310 aa12.13□□□□□ -0.47
CCDC88C-213ENST00000557455 MPZL3Q6UWV2 235 aa12.13□□□□□ -0.47
CCDC88C-213ENST00000557455 MTSS1LQ765P7 747 aa12.13□□□□□ -0.47
CCDC88C-213ENST00000557455 RTL10Q7L3V2 364 aa12.13□□□□□ -0.47
CCDC88C-213ENST00000557455 ASCL5Q7RTU5 278 aa12.13□□□□□ -0.47
CCDC88C-213ENST00000557455 KCNK18Q7Z418 384 aa12.13□□□□□ -0.47
CCDC88C-213ENST00000557455 FRMD5Q7Z6J6 570 aa12.13□□□□□ -0.47
CCDC88C-213ENST00000557455 C3orf58Q8NDZ4 430 aa12.13□□□□□ -0.47
CCDC88C-213ENST00000557455 FGF13Q92913 245 aa12.13□□□□□ -0.47
CCDC88C-213ENST00000557455 FGF14Q92915 247 aa12.13□□□□□ -0.47
CCDC88C-213ENST00000557455 NKD2Q969F2 451 aaPredicted RBP12.13□□□□□ -0.47
CCDC88C-213ENST00000557455 SNX27Q96L92 541 aa12.13□□□□□ -0.47
CCDC88C-213ENST00000557455 ZMAT2Q96NC0 199 aaKnown RBP12.13□□□□□ -0.47
CCDC88C-213ENST00000557455 NTPCRQ9BSD7 190 aaKnown RBP12.13□□□□□ -0.47
CCDC88C-213ENST00000557455 MMTAG2Q9BU76 263 aaKnown RBP12.13□□□□□ -0.47
CCDC88C-213ENST00000557455 TBC1D17Q9HA65 648 aa12.13□□□□□ -0.47
CCDC88C-213ENST00000557455 ARHGEF3Q9NR81 526 aa12.13□□□□□ -0.47
CCDC88C-213ENST00000557455 SLC2A4RGQ9NR83 387 aa12.13□□□□□ -0.47
CCDC88C-213ENST00000557455 CFAP54Q96N23 3096 aa12.13□□□□□ -0.47
CCDC88C-213ENST00000557455 PRR23AA6NEV1 266 aa12.12□□□□□ -0.47
CCDC88C-213ENST00000557455 H3BQV1 296 aa12.12□□□□□ -0.47
CCDC88C-213ENST00000557455 PODXLO00592 558 aa12.12□□□□□ -0.47
CCDC88C-213ENST00000557455 HARSP12081 509 aaKnown RBP12.12□□□□□ -0.47
CCDC88C-213ENST00000557455 GUCY2CP25092 1073 aa12.12□□□□□ -0.47
CCDC88C-213ENST00000557455 ELF1P32519 619 aa12.12□□□□□ -0.47
CCDC88C-213ENST00000557455 SMTNP53814 917 aa12.12□□□□□ -0.47
CCDC88C-213ENST00000557455 ATP2C1P98194 919 aaPredicted RBP12.12□□□□□ -0.47
CCDC88C-213ENST00000557455 PABPC1LQ4VXU2 614 aaKnown RBP12.12□□□□□ -0.47
CCDC88C-213ENST00000557455 HYIQ5T013 277 aa12.12□□□□□ -0.47
CCDC88C-213ENST00000557455 PHLDB3Q6NSJ2 640 aa12.12□□□□□ -0.47
CCDC88C-213ENST00000557455 RSPO2Q6UXX9 243 aaPredicted RBP12.12□□□□□ -0.47
CCDC88C-213ENST00000557455 KCTD17Q8N5Z5 321 aa12.12□□□□□ -0.47
CCDC88C-213ENST00000557455 ITFG1Q8TB96 612 aa12.12□□□□□ -0.47
CCDC88C-213ENST00000557455 SPIRE2Q8WWL2 714 aa12.12□□□□□ -0.47
CCDC88C-213ENST00000557455 CDK5RAP3Q96JB5 506 aa12.12□□□□□ -0.47
CCDC88C-213ENST00000557455 ZBTB45Q96K62 511 aaPredicted RBP12.12□□□□□ -0.47
CCDC88C-213ENST00000557455 PLIN2Q99541 437 aa12.12□□□□□ -0.47
CCDC88C-213ENST00000557455 RPP25Q9BUL9 199 aaKnown RBP12.12□□□□□ -0.47
CCDC88C-213ENST00000557455 HCFC1R1Q9NWW0 138 aa12.12□□□□□ -0.47
CCDC88C-213ENST00000557455 ANKFY1Q9P2R3 1169 aa12.12□□□□□ -0.47
CCDC88C-213ENST00000557455 NUB1Q9Y5A7 615 aa12.12□□□□□ -0.47
CCDC88C-213ENST00000557455 VWA3AA6NCI4 1184 aa12.11□□□□□ -0.47
CCDC88C-213ENST00000557455 ABLIM1O14639 778 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms