RNA–Protein interactions for RNA: ENST00000557024.1

SYNE2-224, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 998 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-224ENST00000557024 KLK14Q9P0G3 267 aa10.35□□□□□ -0.75
SYNE2-224ENST00000557024 KCNH3Q9ULD8 1083 aa10.35□□□□□ -0.75
SYNE2-224ENST00000557024 ANKRD11Q6UB99 2663 aaPredicted RBP10.35□□□□□ -0.75
SYNE2-224ENST00000557024 SPEGQ15772 3267 aa10.34□□□□□ -0.75
SYNE2-224ENST00000557024 MYH9P35579 1960 aaKnown RBP10.34□□□□□ -0.75
SYNE2-224ENST00000557024 TDP2O95551 362 aa10.34□□□□□ -0.75
SYNE2-224ENST00000557024 CEBPBP17676 345 aa10.34□□□□□ -0.75
SYNE2-224ENST00000557024 RBM25P49756 843 aaKnown RBP10.34□□□□□ -0.75
SYNE2-224ENST00000557024 CCR3P51677 355 aa10.34□□□□□ -0.75
SYNE2-224ENST00000557024 USP11P51784 963 aa10.34□□□□□ -0.75
SYNE2-224ENST00000557024 GRIK3Q13003 919 aa10.34□□□□□ -0.75
SYNE2-224ENST00000557024 SLC5A9Q2M3M2 681 aa10.34□□□□□ -0.75
SYNE2-224ENST00000557024 AASDHQ4L235 1098 aaPredicted RBP10.34□□□□□ -0.75
SYNE2-224ENST00000557024 HEATR6Q6AI08 1181 aaKnown RBP10.34□□□□□ -0.75
SYNE2-224ENST00000557024 B3GNT9Q6UX72 402 aa10.34□□□□□ -0.75
SYNE2-224ENST00000557024 LNX1Q8TBB1 728 aaPredicted RBP10.34□□□□□ -0.75
SYNE2-224ENST00000557024 BICD2Q8TD16 824 aa10.34□□□□□ -0.75
SYNE2-224ENST00000557024 PIK3R5Q8WYR1 880 aa10.34□□□□□ -0.75
SYNE2-224ENST00000557024 DNASE1L2Q92874 299 aa10.34□□□□□ -0.75
SYNE2-224ENST00000557024 CCDC51Q96ER9 411 aa10.34□□□□□ -0.75
SYNE2-224ENST00000557024 CEP170P1Q96L14 293 aa10.34□□□□□ -0.75
SYNE2-224ENST00000557024 JAKMIP1Q96N16 626 aaKnown RBP10.34□□□□□ -0.75
SYNE2-224ENST00000557024 DHX33Q9H6R0 707 aaKnown RBP10.34□□□□□ -0.75
SYNE2-224ENST00000557024 BRD9Q9H8M2 597 aa10.34□□□□□ -0.75
SYNE2-224ENST00000557024 LMAN1LQ9HAT1 526 aa10.34□□□□□ -0.75
SYNE2-224ENST00000557024 GIT1Q9Y2X7 761 aa10.34□□□□□ -0.75
SYNE2-224ENST00000557024 SNX14Q9Y5W7 946 aa10.34□□□□□ -0.75
SYNE2-224ENST00000557024 MYH15Q9Y2K3 1946 aa10.34□□□□□ -0.75
SYNE2-224ENST00000557024 ZFYVE26Q68DK2 2539 aa10.34□□□□□ -0.75
SYNE2-224ENST00000557024 CASTOR2A6NHX0 329 aa10.33□□□□□ -0.76
SYNE2-224ENST00000557024 C3orf80F5H4A9 247 aa10.33□□□□□ -0.76
SYNE2-224ENST00000557024 INO80B-WBP1J3KQ70 363 aa10.33□□□□□ -0.76
SYNE2-224ENST00000557024 EML1O00423 815 aa10.33□□□□□ -0.76
SYNE2-224ENST00000557024 MAN2B1O00754 1011 aa10.33□□□□□ -0.76
SYNE2-224ENST00000557024 KIF4AO95239 1232 aa10.33□□□□□ -0.76
SYNE2-224ENST00000557024 PROS1P07225 676 aa10.33□□□□□ -0.76
SYNE2-224ENST00000557024 RHOP08100 348 aa10.33□□□□□ -0.76
SYNE2-224ENST00000557024 POU2F2P09086 479 aa10.33□□□□□ -0.76
SYNE2-224ENST00000557024 FCARP24071 287 aa10.33□□□□□ -0.76
SYNE2-224ENST00000557024 AXLP30530 894 aa10.33□□□□□ -0.76
SYNE2-224ENST00000557024 CXCL12P48061 93 aa10.33□□□□□ -0.76
SYNE2-224ENST00000557024 FGD1P98174 961 aa10.33□□□□□ -0.76
SYNE2-224ENST00000557024 EXOSC10Q01780 885 aaKnown RBP10.33□□□□□ -0.76
SYNE2-224ENST00000557024 NCBP1Q09161 790 aaKnown RBP10.33□□□□□ -0.76
SYNE2-224ENST00000557024 EMC2Q15006 297 aa10.33□□□□□ -0.76
SYNE2-224ENST00000557024 SF3A2Q15428 464 aaKnown RBP10.33□□□□□ -0.76
SYNE2-224ENST00000557024 CCDC6Q16204 474 aa10.33□□□□□ -0.76
SYNE2-224ENST00000557024 Q4G0T1 1027 aa10.33□□□□□ -0.76
SYNE2-224ENST00000557024 BLOC1S2Q6QNY1 142 aa10.33□□□□□ -0.76
SYNE2-224ENST00000557024 FERMT3Q86UX7 667 aa10.33□□□□□ -0.76
SYNE2-224ENST00000557024 CDR2LQ86X02 465 aaPredicted RBP10.33□□□□□ -0.76
SYNE2-224ENST00000557024 HACE1Q8IYU2 909 aa10.33□□□□□ -0.76
SYNE2-224ENST00000557024 FAM160A2Q8N612 972 aaPredicted RBP10.33□□□□□ -0.76
SYNE2-224ENST00000557024 TBCKQ8TEA7 893 aa10.33□□□□□ -0.76
SYNE2-224ENST00000557024 FAM3CQ92520 227 aa10.33□□□□□ -0.76
SYNE2-224ENST00000557024 ELSPBP1Q96BH3 223 aa10.33□□□□□ -0.76
SYNE2-224ENST00000557024 IER2Q9BTL4 223 aa10.33□□□□□ -0.76
SYNE2-224ENST00000557024 GDE1Q9NZC3 331 aa10.33□□□□□ -0.76
SYNE2-224ENST00000557024 WRAP73Q9P2S5 460 aaPredicted RBP10.33□□□□□ -0.76
SYNE2-224ENST00000557024 PARP2Q9UGN5 583 aa10.33□□□□□ -0.76
SYNE2-224ENST00000557024 C1QTNF9BB2RNN3 333 aa10.32□□□□□ -0.76
SYNE2-224ENST00000557024 NRG2O14511 850 aaPredicted RBP10.32□□□□□ -0.76
SYNE2-224ENST00000557024 B4GALT5O43286 388 aa10.32□□□□□ -0.76
SYNE2-224ENST00000557024 FOXD2O60548 495 aaPredicted RBP10.32□□□□□ -0.76
SYNE2-224ENST00000557024 NPTXRO95502 500 aa10.32□□□□□ -0.76
SYNE2-224ENST00000557024 HMGB1P09429 215 aaKnown RBP10.32□□□□□ -0.76
SYNE2-224ENST00000557024 C1QTNF9P0C862 333 aa10.32□□□□□ -0.76
SYNE2-224ENST00000557024 ARF4P18085 180 aaPredicted RBP10.32□□□□□ -0.76
SYNE2-224ENST00000557024 OR1D2P34982 312 aa10.32□□□□□ -0.76
SYNE2-224ENST00000557024 RFC5P40937 340 aa10.32□□□□□ -0.76
SYNE2-224ENST00000557024 QARSP47897 775 aaKnown RBP10.32□□□□□ -0.76
SYNE2-224ENST00000557024 PTENP60484 403 aa10.32□□□□□ -0.76
SYNE2-224ENST00000557024 RAB33AQ14088 237 aa10.32□□□□□ -0.76
SYNE2-224ENST00000557024 GAS6Q14393 721 aa10.32□□□□□ -0.76
SYNE2-224ENST00000557024 TSGA10IPQ3SY00 556 aa10.32□□□□□ -0.76
SYNE2-224ENST00000557024 FAM78AQ5JUQ0 283 aa10.32□□□□□ -0.76
SYNE2-224ENST00000557024 CEP68Q76N32 757 aa10.32□□□□□ -0.76
SYNE2-224ENST00000557024 DHX32Q7L7V1 743 aaKnown RBP10.32□□□□□ -0.76
SYNE2-224ENST00000557024 EXOC8Q8IYI6 725 aa10.32□□□□□ -0.76
SYNE2-224ENST00000557024 ETNPPLQ8TBG4 499 aa10.32□□□□□ -0.76
SYNE2-224ENST00000557024 TCP11Q8WWU5 503 aa10.32□□□□□ -0.76
SYNE2-224ENST00000557024 KCNB2Q92953 911 aa10.32□□□□□ -0.76
SYNE2-224ENST00000557024 TRMT61BQ9BVS5 477 aaKnown RBP10.32□□□□□ -0.76
SYNE2-224ENST00000557024 RXFP3Q9NSD7 469 aa10.32□□□□□ -0.76
SYNE2-224ENST00000557024 VPS54Q9P1Q0 977 aa10.32□□□□□ -0.76
SYNE2-224ENST00000557024 ZMIZ1Q9ULJ6 1067 aa10.32□□□□□ -0.76
SYNE2-224ENST00000557024 CYP46A1Q9Y6A2 500 aa10.32□□□□□ -0.76
SYNE2-224ENST00000557024 PIAS3Q9Y6X2 628 aa10.32□□□□□ -0.76
SYNE2-224ENST00000557024 CCDC196A0A1B0GTZ2 297 aa10.31□□□□□ -0.76
SYNE2-224ENST00000557024 PPP1R3GB7ZBB8 358 aa10.31□□□□□ -0.76
SYNE2-224ENST00000557024 TM4SF5O14894 197 aa10.31□□□□□ -0.76
SYNE2-224ENST00000557024 ASAP2O43150 1006 aa10.31□□□□□ -0.76
SYNE2-224ENST00000557024 PRPF3O43395 683 aaKnown RBP10.31□□□□□ -0.76
SYNE2-224ENST00000557024 CHRNB1P11230 501 aa10.31□□□□□ -0.76
SYNE2-224ENST00000557024 GDI1P31150 447 aa10.31□□□□□ -0.76
SYNE2-224ENST00000557024 LIMK1P53667 647 aa10.31□□□□□ -0.76
SYNE2-224ENST00000557024 RCAN1P53805 252 aa10.31□□□□□ -0.76
SYNE2-224ENST00000557024 AKAP17AQ02040 695 aaKnown RBP10.31□□□□□ -0.76
SYNE2-224ENST00000557024 MBTD1Q05BQ5 628 aa10.31□□□□□ -0.76
SYNE2-224ENST00000557024 TUSC3Q13454 348 aa10.31□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms