RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-223ENST00000557005 SEMA4AQ9H3S1 761 aa5.27□□□□□ -1.57
SYNE2-223ENST00000557005 PFDN4Q9NQP4 134 aa5.27□□□□□ -1.57
SYNE2-223ENST00000557005 PICK1Q9NRD5 415 aa5.27□□□□□ -1.57
SYNE2-223ENST00000557005 TAS2R14Q9NYV8 317 aa5.27□□□□□ -1.57
SYNE2-223ENST00000557005 EPS15L1Q9UBC2 864 aa5.27□□□□□ -1.57
SYNE2-223ENST00000557005 GRIN2DO15399 1336 aa5.27□□□□□ -1.57
SYNE2-223ENST00000557005 CCDC22O60826 627 aa5.27□□□□□ -1.57
SYNE2-223ENST00000557005 CHKAP35790 457 aa5.27□□□□□ -1.57
SYNE2-223ENST00000557005 GABPAQ06546 454 aa5.27□□□□□ -1.57
SYNE2-223ENST00000557005 SEMA3FQ13275 785 aa5.27□□□□□ -1.57
SYNE2-223ENST00000557005 AOC3Q16853 763 aa5.27□□□□□ -1.57
SYNE2-223ENST00000557005 TTC39BQ5VTQ0 682 aaPredicted RBP5.27□□□□□ -1.57
SYNE2-223ENST00000557005 GRAMD4Q6IC98 578 aa5.27□□□□□ -1.57
SYNE2-223ENST00000557005 JADE1Q6IE81 842 aa5.27□□□□□ -1.57
SYNE2-223ENST00000557005 SLC47A2Q86VL8 602 aa5.27□□□□□ -1.57
SYNE2-223ENST00000557005 RHOT1Q8IXI2 618 aa5.27□□□□□ -1.57
SYNE2-223ENST00000557005 SPIRE2Q8WWL2 714 aa5.27□□□□□ -1.57
SYNE2-223ENST00000557005 EXT2Q93063 718 aa5.27□□□□□ -1.57
SYNE2-223ENST00000557005 CCDC124Q96CT7 223 aaKnown RBP5.27□□□□□ -1.57
SYNE2-223ENST00000557005 CDCA7Q9BWT1 371 aaPredicted RBP5.27□□□□□ -1.57
SYNE2-223ENST00000557005 CHMP2BQ9UQN3 213 aa5.27□□□□□ -1.57
SYNE2-223ENST00000557005 HEY1Q9Y5J3 304 aa5.27□□□□□ -1.57
SYNE2-223ENST00000557005 TACC3Q9Y6A5 838 aa5.27□□□□□ -1.57
SYNE2-223ENST00000557005 PFASO15067 1338 aa5.27□□□□□ -1.57
SYNE2-223ENST00000557005 RGPD1P0DJD0 1748 aa5.27□□□□□ -1.57
SYNE2-223ENST00000557005 DENND3A2RUS2 1198 aa5.27□□□□□ -1.57
SYNE2-223ENST00000557005 NEMP1O14524 444 aa5.27□□□□□ -1.57
SYNE2-223ENST00000557005 KLRC4O43908 158 aa5.27□□□□□ -1.57
SYNE2-223ENST00000557005 KRT4P19013 534 aa5.27□□□□□ -1.57
SYNE2-223ENST00000557005 SLC12A2P55011 1212 aa5.27□□□□□ -1.57
SYNE2-223ENST00000557005 GEMIN4P57678 1058 aaKnown RBP5.27□□□□□ -1.57
SYNE2-223ENST00000557005 PHEXP78562 749 aa5.27□□□□□ -1.57
SYNE2-223ENST00000557005 SMTNL2Q2TAL5 461 aa5.27□□□□□ -1.57
SYNE2-223ENST00000557005 SBK1Q52WX2 424 aa5.27□□□□□ -1.57
SYNE2-223ENST00000557005 KRT80Q6KB66 452 aa5.27□□□□□ -1.57
SYNE2-223ENST00000557005 GPD1LQ8N335 351 aa5.27□□□□□ -1.57
SYNE2-223ENST00000557005 XXYLT1Q8NBI6 393 aa5.27□□□□□ -1.57
SYNE2-223ENST00000557005 SCFD1Q8WVM8 642 aa5.27□□□□□ -1.57
SYNE2-223ENST00000557005 MPP4Q96JB8 637 aa5.27□□□□□ -1.57
SYNE2-223ENST00000557005 CLMNQ96JQ2 1002 aa5.27□□□□□ -1.57
SYNE2-223ENST00000557005 SERPINI1Q99574 410 aa5.27□□□□□ -1.57
SYNE2-223ENST00000557005 WDR11Q9BZH6 1224 aa5.27□□□□□ -1.57
SYNE2-223ENST00000557005 SUDS3Q9H7L9 328 aaPredicted RBP5.27□□□□□ -1.57
SYNE2-223ENST00000557005 IL17RBQ9NRM6 502 aa5.27□□□□□ -1.57
SYNE2-223ENST00000557005 PARVAQ9NVD7 372 aa5.27□□□□□ -1.57
SYNE2-223ENST00000557005 DDX56Q9NY93 547 aaKnown RBP5.27□□□□□ -1.57
SYNE2-223ENST00000557005 SERPINB13Q9UIV8 391 aa5.27□□□□□ -1.57
SYNE2-223ENST00000557005 NAGPAQ9UK23 515 aa5.27□□□□□ -1.57
SYNE2-223ENST00000557005 SMG5Q9UPR3 1016 aaKnown RBP5.27□□□□□ -1.57
SYNE2-223ENST00000557005 GJA3Q9Y6H8 435 aa5.27□□□□□ -1.57
SYNE2-223ENST00000557005 SPATA31A3Q5VYP0 1347 aa5.27□□□□□ -1.57
SYNE2-223ENST00000557005 NALCNQ8IZF0 1738 aa5.27□□□□□ -1.57
SYNE2-223ENST00000557005 MRC1P22897 1456 aa5.27□□□□□ -1.57
SYNE2-223ENST00000557005 FER1L4A9Z1Z3 1794 aa5.27□□□□□ -1.57
SYNE2-223ENST00000557005 O00370 1275 aa5.27□□□□□ -1.57
SYNE2-223ENST00000557005 CAPN9O14815 690 aa5.27□□□□□ -1.57
SYNE2-223ENST00000557005 MED7O43513 233 aa5.27□□□□□ -1.57
SYNE2-223ENST00000557005 BANF1O75531 89 aa5.27□□□□□ -1.57
SYNE2-223ENST00000557005 ZBED1O96006 694 aa5.27□□□□□ -1.57
SYNE2-223ENST00000557005 HNRNPCP07910 306 aaKnown RBP eCLIP5.27□□□□□ -1.57
SYNE2-223ENST00000557005 EIF2AK2P19525 551 aaKnown RBP5.27□□□□□ -1.57
SYNE2-223ENST00000557005 BGNP21810 368 aa5.27□□□□□ -1.57
SYNE2-223ENST00000557005 BRD2P25440 801 aaKnown RBP5.27□□□□□ -1.57
SYNE2-223ENST00000557005 RFC1P35251 1148 aaPredicted RBP5.27□□□□□ -1.57
SYNE2-223ENST00000557005 DDR1Q08345 913 aa5.27□□□□□ -1.57
SYNE2-223ENST00000557005 GIT2Q14161 759 aa5.27□□□□□ -1.57
SYNE2-223ENST00000557005 SPOPLQ6IQ16 392 aa5.27□□□□□ -1.57
SYNE2-223ENST00000557005 SLC13A5Q86YT5 568 aaPredicted RBP5.27□□□□□ -1.57
SYNE2-223ENST00000557005 RCOR2Q8IZ40 523 aa5.27□□□□□ -1.57
SYNE2-223ENST00000557005 CCNYQ8ND76 341 aa5.27□□□□□ -1.57
SYNE2-223ENST00000557005 NMD3Q96D46 503 aaKnown RBP5.27□□□□□ -1.57
SYNE2-223ENST00000557005 VPS11Q9H270 941 aa5.27□□□□□ -1.57
SYNE2-223ENST00000557005 HEY2Q9UBP5 337 aa5.27□□□□□ -1.57
SYNE2-223ENST00000557005 ATRNO75882 1429 aa5.26□□□□□ -1.57
SYNE2-223ENST00000557005 SUPT3HO75486 399 aa5.26□□□□□ -1.57
SYNE2-223ENST00000557005 SLC1A1P43005 524 aa5.26□□□□□ -1.57
SYNE2-223ENST00000557005 CRKP46108 304 aa5.26□□□□□ -1.57
SYNE2-223ENST00000557005 CACNA2D1P54289 1103 aa5.26□□□□□ -1.57
SYNE2-223ENST00000557005 ALCAMQ13740 583 aa5.26□□□□□ -1.57
SYNE2-223ENST00000557005 IZUMO2Q6UXV1 221 aa5.26□□□□□ -1.57
SYNE2-223ENST00000557005 PPP1R3FQ6ZSY5 799 aaPredicted RBP5.26□□□□□ -1.57
SYNE2-223ENST00000557005 NLRP9Q7RTR0 991 aa5.26□□□□□ -1.57
SYNE2-223ENST00000557005 ATP11CQ8NB49 1132 aa5.26□□□□□ -1.57
SYNE2-223ENST00000557005 HDAC11Q96DB2 347 aa5.26□□□□□ -1.57
SYNE2-223ENST00000557005 RPS6KC1Q96S38 1066 aa5.26□□□□□ -1.57
SYNE2-223ENST00000557005 SHCBP1LQ9BZQ2 653 aa5.26□□□□□ -1.57
SYNE2-223ENST00000557005 RAVER2Q9HCJ3 691 aaKnown RBP5.26□□□□□ -1.57
SYNE2-223ENST00000557005 TUFT1Q9NNX1 390 aa5.26□□□□□ -1.57
SYNE2-223ENST00000557005 WHRNQ9P202 907 aa5.26□□□□□ -1.57
SYNE2-223ENST00000557005 UBE4BO95155 1302 aa5.26□□□□□ -1.57
SYNE2-223ENST00000557005 ZBBXA8MT70 800 aa5.26□□□□□ -1.57
SYNE2-223ENST00000557005 B2RBV5 119 aa5.26□□□□□ -1.57
SYNE2-223ENST00000557005 M0QYV0 167 aa5.26□□□□□ -1.57
SYNE2-223ENST00000557005 KCNN4O15554 427 aa5.26□□□□□ -1.57
SYNE2-223ENST00000557005 CAMTA2O94983 1202 aa5.26□□□□□ -1.57
SYNE2-223ENST00000557005 CBX6O95503 412 aa5.26□□□□□ -1.57
SYNE2-223ENST00000557005 NTSR2O95665 410 aa5.26□□□□□ -1.57
SYNE2-223ENST00000557005 APOEP02649 317 aa5.26□□□□□ -1.57
SYNE2-223ENST00000557005 EEF1B2P24534 225 aaKnown RBP5.26□□□□□ -1.57
SYNE2-223ENST00000557005 YWHABP31946 246 aaKnown RBP5.26□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms