RNA–Protein interactions for RNA: ENST00000556353.1

PRPF39-209, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 687 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-209ENST00000556353 DNM3Q9UQ16 869 aa6.88□□□□□ -1.31
PRPF39-209ENST00000556353 PIPSLA2A3N6 862 aa6.87□□□□□ -1.31
PRPF39-209ENST00000556353 CDKL5O76039 1030 aa6.87□□□□□ -1.31
PRPF39-209ENST00000556353 SPDEFO95238 335 aa6.87□□□□□ -1.31
PRPF39-209ENST00000556353 NUDT3O95989 172 aa6.87□□□□□ -1.31
PRPF39-209ENST00000556353 HKR1P10072 659 aa6.87□□□□□ -1.31
PRPF39-209ENST00000556353 BLOC1S1P78537 153 aa6.87□□□□□ -1.31
PRPF39-209ENST00000556353 KLF1Q13351 362 aaPredicted RBP6.87□□□□□ -1.31
PRPF39-209ENST00000556353 TP53BP2Q13625 1128 aa6.87□□□□□ -1.31
PRPF39-209ENST00000556353 UBXN2BQ14CS0 331 aa6.87□□□□□ -1.31
PRPF39-209ENST00000556353 SEPT2Q15019 361 aa6.87□□□□□ -1.31
PRPF39-209ENST00000556353 ABHD17BQ5VST6 288 aa6.87□□□□□ -1.31
PRPF39-209ENST00000556353 ZNF529Q6P280 563 aa6.87□□□□□ -1.31
PRPF39-209ENST00000556353 MAPKAPK5Q8IW41 473 aa6.87□□□□□ -1.31
PRPF39-209ENST00000556353 CAVIN3Q969G5 261 aa6.87□□□□□ -1.31
PRPF39-209ENST00000556353 COQ10AQ96MF6 247 aa6.87□□□□□ -1.31
PRPF39-209ENST00000556353 FAM126AQ9BYI3 521 aaPredicted RBP6.87□□□□□ -1.31
PRPF39-209ENST00000556353 SYBUQ9NX95 663 aa6.87□□□□□ -1.31
PRPF39-209ENST00000556353 FAM30AQ9NZY2 134 aa6.87□□□□□ -1.31
PRPF39-209ENST00000556353 ZNHIT2Q9UHR6 403 aa6.87□□□□□ -1.31
PRPF39-209ENST00000556353 SIK3Q9Y2K2 1263 aa6.87□□□□□ -1.31
PRPF39-209ENST00000556353 POLR2AP24928 1970 aaKnown RBP6.86□□□□□ -1.31
PRPF39-209ENST00000556353 PHLDB1Q86UU1 1377 aa6.86□□□□□ -1.31
PRPF39-209ENST00000556353 GPR32O75388 356 aa6.86□□□□□ -1.31
PRPF39-209ENST00000556353 FOSP01100 380 aaPredicted RBP6.86□□□□□ -1.31
PRPF39-209ENST00000556353 POU3F3P20264 500 aaPredicted RBP6.86□□□□□ -1.31
PRPF39-209ENST00000556353 FPR1P21462 350 aa6.86□□□□□ -1.31
PRPF39-209ENST00000556353 TGM1P22735 817 aa6.86□□□□□ -1.31
PRPF39-209ENST00000556353 SLC6A9P48067 706 aa6.86□□□□□ -1.31
PRPF39-209ENST00000556353 ZNF575Q86XF7 245 aa6.86□□□□□ -1.31
PRPF39-209ENST00000556353 CCHCR1Q8TD31 782 aa6.86□□□□□ -1.31
PRPF39-209ENST00000556353 RNPEPQ9H4A4 650 aa6.86□□□□□ -1.31
PRPF39-209ENST00000556353 MANSC1Q9H8J5 431 aa6.86□□□□□ -1.31
PRPF39-209ENST00000556353 NOX1Q9Y5S8 564 aa6.86□□□□□ -1.31
PRPF39-209ENST00000556353 ACTL7AQ9Y615 435 aa6.86□□□□□ -1.31
PRPF39-209ENST00000556353 A0A1B0GTW7 788 aa6.85□□□□□ -1.31
PRPF39-209ENST00000556353 AGXTP21549 392 aa6.85□□□□□ -1.31
PRPF39-209ENST00000556353 SEM1Q6ZVN7 128 aa6.85□□□□□ -1.31
PRPF39-209ENST00000556353 TMEM132CQ8N3T6 1108 aa6.85□□□□□ -1.31
PRPF39-209ENST00000556353 ABCF1Q8NE71 845 aaKnown RBP eCLIP6.85□□□□□ -1.31
PRPF39-209ENST00000556353 ASB10Q8WXI3 467 aa6.85□□□□□ -1.31
PRPF39-209ENST00000556353 SSH1Q8WYL5 1049 aa6.85□□□□□ -1.31
PRPF39-209ENST00000556353 LINC00476Q8WZB0 136 aa6.85□□□□□ -1.31
PRPF39-209ENST00000556353 SLC2A13Q96QE2 648 aa6.85□□□□□ -1.31
PRPF39-209ENST00000556353 RIOX1Q9H6W3 641 aa6.85□□□□□ -1.31
PRPF39-209ENST00000556353 ZNF277Q9NRM2 450 aaPredicted RBP6.85□□□□□ -1.31
PRPF39-209ENST00000556353 SLC23A1Q9UHI7 598 aa6.85□□□□□ -1.31
PRPF39-209ENST00000556353 EPN1Q9Y6I3 576 aaPredicted RBP6.85□□□□□ -1.31
PRPF39-209ENST00000556353 HMGXB3Q12766 1538 aa6.85□□□□□ -1.31
PRPF39-209ENST00000556353 ELANEP08246 267 aa6.84□□□□□ -1.31
PRPF39-209ENST00000556353 EGR2P11161 476 aaPredicted RBP6.84□□□□□ -1.31
PRPF39-209ENST00000556353 ALAS1P13196 640 aa6.84□□□□□ -1.31
PRPF39-209ENST00000556353 GCSHP23434 173 aa6.84□□□□□ -1.31
PRPF39-209ENST00000556353 PCSK1P29120 753 aa6.84□□□□□ -1.31
PRPF39-209ENST00000556353 OCA2Q04671 838 aa6.84□□□□□ -1.31
PRPF39-209ENST00000556353 CLUL1Q15846 466 aa6.84□□□□□ -1.31
PRPF39-209ENST00000556353 OLFML1Q6UWY5 402 aa6.84□□□□□ -1.31
PRPF39-209ENST00000556353 OR2I1PQ8NGU4 316 aa6.84□□□□□ -1.31
PRPF39-209ENST00000556353 MYOCQ99972 504 aa6.84□□□□□ -1.31
PRPF39-209ENST00000556353 C7orf25Q9BPX7 421 aa6.84□□□□□ -1.31
PRPF39-209ENST00000556353 ZSWIM1Q9BR11 485 aa6.84□□□□□ -1.31
PRPF39-209ENST00000556353 ALOXE3Q9BYJ1 711 aa6.84□□□□□ -1.31
PRPF39-209ENST00000556353 PUS7LQ9H0K6 701 aaKnown RBP6.84□□□□□ -1.31
PRPF39-209ENST00000556353 SLC5A4Q9NY91 659 aa6.84□□□□□ -1.31
PRPF39-209ENST00000556353 RUVBL1Q9Y265 456 aaKnown RBP6.84□□□□□ -1.31
PRPF39-209ENST00000556353 NCAPD3P42695 1498 aa6.84□□□□□ -1.31
PRPF39-209ENST00000556353 ATAD2BQ9ULI0 1458 aa6.84□□□□□ -1.31
PRPF39-209ENST00000556353 PEG3Q9GZU2 1588 aa6.83□□□□□ -1.32
PRPF39-209ENST00000556353 TRIM75PA6NK02 468 aa6.83□□□□□ -1.32
PRPF39-209ENST00000556353 ZAR1LA6NP61 321 aa6.83□□□□□ -1.32
PRPF39-209ENST00000556353 ITGAMP11215 1152 aa6.83□□□□□ -1.32
PRPF39-209ENST00000556353 SLC6A2P23975 617 aa6.83□□□□□ -1.32
PRPF39-209ENST00000556353 SEC24CP53992 1094 aa6.83□□□□□ -1.32
PRPF39-209ENST00000556353 MTM1Q13496 603 aa6.83□□□□□ -1.32
PRPF39-209ENST00000556353 B3GNTL1Q67FW5 361 aaPredicted RBP6.83□□□□□ -1.32
PRPF39-209ENST00000556353 UBE3BQ7Z3V4 1068 aa6.83□□□□□ -1.32
PRPF39-209ENST00000556353 DDX42Q86XP3 938 aaKnown RBP eCLIP6.83□□□□□ -1.32
PRPF39-209ENST00000556353 CNTD1Q8N815 330 aa6.83□□□□□ -1.32
PRPF39-209ENST00000556353 PPM1NQ8N819 430 aa6.83□□□□□ -1.32
PRPF39-209ENST00000556353 SPC25Q9HBM1 224 aa6.83□□□□□ -1.32
PRPF39-209ENST00000556353 FBXO34Q9NWN3 711 aa6.83□□□□□ -1.32
PRPF39-209ENST00000556353 TESQ9UGI8 421 aaKnown RBP6.83□□□□□ -1.32
PRPF39-209ENST00000556353 AMY1AP04745 511 aa6.82□□□□□ -1.32
PRPF39-209ENST00000556353 DDCP20711 480 aa6.82□□□□□ -1.32
PRPF39-209ENST00000556353 FGFR4P22455 802 aa6.82□□□□□ -1.32
PRPF39-209ENST00000556353 ERCC6LQ2NKX8 1250 aa6.82□□□□□ -1.32
PRPF39-209ENST00000556353 STRIP1Q5VSL9 837 aa6.82□□□□□ -1.32
PRPF39-209ENST00000556353 DPY19L2P1Q6NXN4 242 aa6.82□□□□□ -1.32
PRPF39-209ENST00000556353 FOXR2Q6PJQ5 311 aa6.82□□□□□ -1.32
PRPF39-209ENST00000556353 NECAB2Q7Z6G3 386 aa6.82□□□□□ -1.32
PRPF39-209ENST00000556353 FAM43AQ8N2R8 423 aa6.82□□□□□ -1.32
PRPF39-209ENST00000556353 RNF31Q96EP0 1072 aa6.82□□□□□ -1.32
PRPF39-209ENST00000556353 SAP30BPQ9UHR5 308 aaKnown RBP6.82□□□□□ -1.32
PRPF39-209ENST00000556353 INTUQ9ULD6 942 aa6.82□□□□□ -1.32
PRPF39-209ENST00000556353 SMARCA2P51531 1590 aa6.82□□□□□ -1.32
PRPF39-209ENST00000556353 MYBBP1AQ9BQG0 1328 aaKnown RBP6.81□□□□□ -1.32
PRPF39-209ENST00000556353 GPANK1O95872 356 aa6.81□□□□□ -1.32
PRPF39-209ENST00000556353 FDXRP22570 491 aa6.81□□□□□ -1.32
PRPF39-209ENST00000556353 CXADRP78310 365 aa6.81□□□□□ -1.32
PRPF39-209ENST00000556353 HSD11B2P80365 405 aa6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms