RNA–Protein interactions for RNA: ENST00000556083.1

ACTN1-216, Transcript of actinin alpha 1, humanhuman

TSL 1 (best)

Gene ACTN1, Length 4,674 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-216ENST00000556083 TBC1D10BQ4KMP7 808 aaPredicted RBP11.3□□□□□ -0.6
ACTN1-216ENST00000556083 GPIHBP1Q8IV16 184 aa11.3□□□□□ -0.6
ACTN1-216ENST00000556083 VPS37AQ8NEZ2 397 aa11.3□□□□□ -0.6
ACTN1-216ENST00000556083 SH3KBP1Q96B97 665 aa11.3□□□□□ -0.6
ACTN1-216ENST00000556083 AP1M1Q9BXS5 423 aa11.3□□□□□ -0.6
ACTN1-216ENST00000556083 PRDM16Q9HAZ2 1276 aa11.3□□□□□ -0.6
ACTN1-216ENST00000556083 TMEM8AQ9HCN3 771 aa11.3□□□□□ -0.6
ACTN1-216ENST00000556083 GTSE1Q9NYZ3 720 aa11.3□□□□□ -0.6
ACTN1-216ENST00000556083 TBK1Q9UHD2 729 aa11.3□□□□□ -0.6
ACTN1-216ENST00000556083 HACL1Q9UJ83 578 aa11.3□□□□□ -0.6
ACTN1-216ENST00000556083 HEY1Q9Y5J3 304 aa11.3□□□□□ -0.6
ACTN1-216ENST00000556083 MAP3K13O43283 966 aa11.29□□□□□ -0.6
ACTN1-216ENST00000556083 SRGNP10124 158 aa11.29□□□□□ -0.6
ACTN1-216ENST00000556083 SPRP35270 261 aaPredicted RBP11.29□□□□□ -0.6
ACTN1-216ENST00000556083 HSPA9P38646 679 aaKnown RBP11.29□□□□□ -0.6
ACTN1-216ENST00000556083 CYB5R4Q7L1T6 521 aa11.29□□□□□ -0.6
ACTN1-216ENST00000556083 MFN1Q8IWA4 741 aa11.29□□□□□ -0.6
ACTN1-216ENST00000556083 TBC1D16Q8TBP0 767 aa11.29□□□□□ -0.6
ACTN1-216ENST00000556083 KCNK16Q96T55 309 aa11.29□□□□□ -0.6
ACTN1-216ENST00000556083 MRPL46Q9H2W6 279 aaKnown RBP11.29□□□□□ -0.6
ACTN1-216ENST00000556083 DHX35Q9H5Z1 703 aaKnown RBP11.29□□□□□ -0.6
ACTN1-216ENST00000556083 INPP5FQ9Y2H2 1132 aa11.29□□□□□ -0.6
ACTN1-216ENST00000556083 A0A1B0GW55 424 aa11.29□□□□□ -0.6
ACTN1-216ENST00000556083 KLHL2O95198 593 aa11.29□□□□□ -0.6
ACTN1-216ENST00000556083 DUX4L2P0CJ85 424 aa11.29□□□□□ -0.6
ACTN1-216ENST00000556083 DUX4L3P0CJ86 424 aa11.29□□□□□ -0.6
ACTN1-216ENST00000556083 DUX4L4P0CJ87 422 aa11.29□□□□□ -0.6
ACTN1-216ENST00000556083 DUX4L5P0CJ88 424 aa11.29□□□□□ -0.6
ACTN1-216ENST00000556083 DUX4L6P0CJ89 424 aa11.29□□□□□ -0.6
ACTN1-216ENST00000556083 DUX4L7P0CJ90 424 aa11.29□□□□□ -0.6
ACTN1-216ENST00000556083 RPA1P27694 616 aa11.29□□□□□ -0.6
ACTN1-216ENST00000556083 GPS1Q13098 491 aa11.29□□□□□ -0.6
ACTN1-216ENST00000556083 NFIXQ14938 502 aa11.29□□□□□ -0.6
ACTN1-216ENST00000556083 MMS22LQ6ZRQ5 1243 aa11.29□□□□□ -0.6
ACTN1-216ENST00000556083 ADSSL1Q8N142 457 aa11.29□□□□□ -0.6
ACTN1-216ENST00000556083 STAG2Q8N3U4 1231 aa11.29□□□□□ -0.6
ACTN1-216ENST00000556083 TAB3Q8N5C8 712 aaPredicted RBP11.29□□□□□ -0.6
ACTN1-216ENST00000556083 PPM1NQ8N819 430 aa11.29□□□□□ -0.6
ACTN1-216ENST00000556083 FAR2Q96K12 515 aa11.29□□□□□ -0.6
ACTN1-216ENST00000556083 PRPF18Q99633 342 aaKnown RBP11.29□□□□□ -0.6
ACTN1-216ENST00000556083 ZNF518BQ9C0D4 1074 aa11.29□□□□□ -0.6
ACTN1-216ENST00000556083 DUX4Q9UBX2 424 aa11.29□□□□□ -0.6
ACTN1-216ENST00000556083 H7C4K7 107 aa11.29□□□□□ -0.6
ACTN1-216ENST00000556083 NKRFO15226 690 aaKnown RBP eCLIP11.29□□□□□ -0.6
ACTN1-216ENST00000556083 PFDN1O60925 122 aa11.29□□□□□ -0.6
ACTN1-216ENST00000556083 H2AFYO75367 372 aaKnown RBP11.29□□□□□ -0.6
ACTN1-216ENST00000556083 TMEM253P0C7T8 217 aa11.29□□□□□ -0.6
ACTN1-216ENST00000556083 PAX3P23760 479 aa11.29□□□□□ -0.6
ACTN1-216ENST00000556083 CDC25AP30304 524 aa11.29□□□□□ -0.6
ACTN1-216ENST00000556083 STIP1P31948 543 aaKnown RBP11.29□□□□□ -0.6
ACTN1-216ENST00000556083 FOXO4P98177 505 aa11.29□□□□□ -0.6
ACTN1-216ENST00000556083 AARS2Q5JTZ9 985 aaKnown RBP11.29□□□□□ -0.6
ACTN1-216ENST00000556083 IZUMO3Q5VZ72 239 aa11.29□□□□□ -0.6
ACTN1-216ENST00000556083 NAPEPLDQ6IQ20 393 aa11.29□□□□□ -0.6
ACTN1-216ENST00000556083 PID1Q7Z2X4 250 aa11.29□□□□□ -0.6
ACTN1-216ENST00000556083 ANKRD13AQ8IZ07 590 aa11.29□□□□□ -0.6
ACTN1-216ENST00000556083 C3orf20Q8ND61 904 aa11.29□□□□□ -0.6
ACTN1-216ENST00000556083 CCDC126Q96EE4 140 aa11.29□□□□□ -0.6
ACTN1-216ENST00000556083 NT5C1AQ9BXI3 368 aa11.29□□□□□ -0.6
ACTN1-216ENST00000556083 PLEKHA4Q9H4M7 779 aa11.29□□□□□ -0.6
ACTN1-216ENST00000556083 RIC8BQ9NVN3 520 aa11.29□□□□□ -0.6
ACTN1-216ENST00000556083 SLC30A1Q9Y6M5 507 aa11.29□□□□□ -0.6
ACTN1-216ENST00000556083 FRMPD1Q5SYB0 1578 aa11.29□□□□□ -0.6
ACTN1-216ENST00000556083 RSPH10B2B2RC85 870 aa11.29□□□□□ -0.6
ACTN1-216ENST00000556083 CFLARO15519 480 aa11.29□□□□□ -0.6
ACTN1-216ENST00000556083 RSPH10BP0C881 870 aa11.29□□□□□ -0.6
ACTN1-216ENST00000556083 PDIA2Q13087 525 aaKnown RBP11.29□□□□□ -0.6
ACTN1-216ENST00000556083 CAPRIN1Q14444 709 aaKnown RBP11.29□□□□□ -0.6
ACTN1-216ENST00000556083 TTLL9Q3SXZ7 439 aa11.29□□□□□ -0.6
ACTN1-216ENST00000556083 ARHGAP15Q53QZ3 475 aa11.29□□□□□ -0.6
ACTN1-216ENST00000556083 AGBL2Q5U5Z8 902 aa11.29□□□□□ -0.6
ACTN1-216ENST00000556083 CXorf38Q8TB03 319 aa11.29□□□□□ -0.6
ACTN1-216ENST00000556083 ATF5Q9Y2D1 282 aaPredicted RBP11.29□□□□□ -0.6
ACTN1-216ENST00000556083 A0A1B0GTH6 734 aa11.28□□□□□ -0.6
ACTN1-216ENST00000556083 PHF2O75151 1096 aa11.28□□□□□ -0.6
ACTN1-216ENST00000556083 NR3C2P08235 984 aa11.28□□□□□ -0.6
ACTN1-216ENST00000556083 HP1BP3Q5SSJ5 553 aaPredicted RBP11.28□□□□□ -0.6
ACTN1-216ENST00000556083 RASSF3Q86WH2 238 aa11.28□□□□□ -0.6
ACTN1-216ENST00000556083 RNF149Q8NC42 400 aa11.28□□□□□ -0.6
ACTN1-216ENST00000556083 SYNPO2Q9UMS6 1093 aa11.28□□□□□ -0.6
ACTN1-216ENST00000556083 GLI2P10070 1586 aa11.28□□□□□ -0.6
ACTN1-216ENST00000556083 CXCR5P32302 372 aa11.28□□□□□ -0.6
ACTN1-216ENST00000556083 SLCO1A2P46721 670 aa11.28□□□□□ -0.6
ACTN1-216ENST00000556083 NLRP11P59045 1033 aaKnown RBP11.28□□□□□ -0.6
ACTN1-216ENST00000556083 ELAVL2Q12926 359 aaKnown RBP11.28□□□□□ -0.6
ACTN1-216ENST00000556083 KBTBD12Q3ZCT8 623 aa11.28□□□□□ -0.6
ACTN1-216ENST00000556083 ZNF484Q5JVG2 852 aa11.28□□□□□ -0.6
ACTN1-216ENST00000556083 SDE2Q6IQ49 451 aa11.28□□□□□ -0.6
ACTN1-216ENST00000556083 GAS2L3Q86XJ1 694 aa11.28□□□□□ -0.6
ACTN1-216ENST00000556083 APLFQ8IW19 511 aaPredicted RBP11.28□□□□□ -0.6
ACTN1-216ENST00000556083 OR6P1Q8NGX9 317 aa11.28□□□□□ -0.6
ACTN1-216ENST00000556083 SLITRK1Q96PX8 696 aa11.28□□□□□ -0.6
ACTN1-216ENST00000556083 CDK5RAP1Q96SZ6 601 aaKnown RBP11.28□□□□□ -0.6
ACTN1-216ENST00000556083 MOV10L1Q9BXT6 1211 aaKnown RBP11.28□□□□□ -0.6
ACTN1-216ENST00000556083 HSPBP1Q9NZL4 362 aa11.28□□□□□ -0.6
ACTN1-216ENST00000556083 DSEQ9UL01 958 aa11.28□□□□□ -0.6
ACTN1-216ENST00000556083 UBQLN1Q9UMX0 589 aaKnown RBP11.28□□□□□ -0.6
ACTN1-216ENST00000556083 KDM6BO15054 1643 aa11.28□□□□□ -0.6
ACTN1-216ENST00000556083 RNF103-CHMP3A0A140T963 221 aa11.28□□□□□ -0.6
ACTN1-216ENST00000556083 ANXA9O76027 345 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms