RNA–Protein interactions for RNA: ENST00000555773.5

SHMT2-221, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 600 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-221ENST00000555773 ZFP42Q96MM3 310 aa13.5□□□□□ -0.25
SHMT2-221ENST00000555773 CASD1Q96PB1 797 aa13.5□□□□□ -0.25
SHMT2-221ENST00000555773 TUBGCP2Q9BSJ2 902 aa13.5□□□□□ -0.25
SHMT2-221ENST00000555773 MRPL9Q9BYD2 267 aaKnown RBP13.5□□□□□ -0.25
SHMT2-221ENST00000555773 RNF19AQ9NV58 838 aa13.5□□□□□ -0.25
SHMT2-221ENST00000555773 INTS13Q9NVM9 706 aa13.5□□□□□ -0.25
SHMT2-221ENST00000555773 PCDH10Q9P2E7 1040 aa13.5□□□□□ -0.25
SHMT2-221ENST00000555773 UBQLN1Q9UMX0 589 aaKnown RBP13.5□□□□□ -0.25
SHMT2-221ENST00000555773 TANC1Q9C0D5 1861 aa13.5□□□□□ -0.25
SHMT2-221ENST00000555773 CEP290O15078 2479 aa13.5□□□□□ -0.25
SHMT2-221ENST00000555773 LRRIQ3A6PVS8 624 aaPredicted RBP13.49□□□□□ -0.25
SHMT2-221ENST00000555773 TULP1O00294 542 aaPredicted RBP13.49□□□□□ -0.25
SHMT2-221ENST00000555773 PTGESO14684 152 aa13.49□□□□□ -0.25
SHMT2-221ENST00000555773 P4HA2O15460 535 aa13.49□□□□□ -0.25
SHMT2-221ENST00000555773 GJB5O95377 273 aa13.49□□□□□ -0.25
SHMT2-221ENST00000555773 TNNC2P02585 160 aa13.49□□□□□ -0.25
SHMT2-221ENST00000555773 ATP2A2P16615 1042 aaKnown RBP13.49□□□□□ -0.25
SHMT2-221ENST00000555773 WNT7BP56706 349 aa13.49□□□□□ -0.25
SHMT2-221ENST00000555773 DLG4P78352 724 aa13.49□□□□□ -0.25
SHMT2-221ENST00000555773 TFAMQ00059 246 aaKnown RBP13.49□□□□□ -0.25
SHMT2-221ENST00000555773 KCNH2Q12809 1159 aa13.49□□□□□ -0.25
SHMT2-221ENST00000555773 GRIK3Q13003 919 aa13.49□□□□□ -0.25
SHMT2-221ENST00000555773 KRT31Q15323 416 aa13.49□□□□□ -0.25
SHMT2-221ENST00000555773 HSP90AA4PQ58FG1 418 aa13.49□□□□□ -0.25
SHMT2-221ENST00000555773 DCAF17Q5H9S7 520 aaPredicted RBP13.49□□□□□ -0.25
SHMT2-221ENST00000555773 C1orf220Q5T0J3 134 aa13.49□□□□□ -0.25
SHMT2-221ENST00000555773 TCERG1LQ5VWI1 586 aa13.49□□□□□ -0.25
SHMT2-221ENST00000555773 BEST2Q8NFU1 509 aa13.49□□□□□ -0.25
SHMT2-221ENST00000555773 ZNF689Q96CS4 500 aaPredicted RBP13.49□□□□□ -0.25
SHMT2-221ENST00000555773 ANKRD36BP1Q96IX9 119 aa13.49□□□□□ -0.25
SHMT2-221ENST00000555773 RNPC3Q96LT9 517 aaKnown RBP13.49□□□□□ -0.25
SHMT2-221ENST00000555773 ZMAT2Q96NC0 199 aaKnown RBP13.49□□□□□ -0.25
SHMT2-221ENST00000555773 PPP1R10Q96QC0 940 aaKnown RBP13.49□□□□□ -0.25
SHMT2-221ENST00000555773 POP1Q99575 1024 aaKnown RBP13.49□□□□□ -0.25
SHMT2-221ENST00000555773 RAD9AQ99638 391 aa13.49□□□□□ -0.25
SHMT2-221ENST00000555773 ZBED2Q9BTP6 218 aa13.49□□□□□ -0.25
SHMT2-221ENST00000555773 MIOSQ9NXC5 875 aa13.49□□□□□ -0.25
SHMT2-221ENST00000555773 INPP5FQ9Y2H2 1132 aa13.49□□□□□ -0.25
SHMT2-221ENST00000555773 INSL6Q9Y581 213 aa13.49□□□□□ -0.25
SHMT2-221ENST00000555773 TTC3P53804 2025 aa13.49□□□□□ -0.25
SHMT2-221ENST00000555773 SCN5AQ14524 2016 aa13.48□□□□□ -0.25
SHMT2-221ENST00000555773 CARNS1A5YM72 827 aa13.48□□□□□ -0.25
SHMT2-221ENST00000555773 TBKBP1A7MCY6 615 aa13.48□□□□□ -0.25
SHMT2-221ENST00000555773 N4BP1O75113 896 aaKnown RBP13.48□□□□□ -0.25
SHMT2-221ENST00000555773 AFPP02771 609 aaKnown RBP13.48□□□□□ -0.25
SHMT2-221ENST00000555773 C4BPAP04003 597 aaKnown RBP13.48□□□□□ -0.25
SHMT2-221ENST00000555773 TMEM191BP0C7N4 346 aa13.48□□□□□ -0.25
SHMT2-221ENST00000555773 ATP1A3P13637 1013 aa13.48□□□□□ -0.25
SHMT2-221ENST00000555773 RPL9P32969 192 aaKnown RBP13.48□□□□□ -0.25
SHMT2-221ENST00000555773 SCNN1GP51170 649 aa13.48□□□□□ -0.25
SHMT2-221ENST00000555773 AFF1P51825 1210 aaKnown RBP13.48□□□□□ -0.25
SHMT2-221ENST00000555773 HTRA4P83105 476 aaPredicted RBP13.48□□□□□ -0.25
SHMT2-221ENST00000555773 CETN1Q12798 172 aa13.48□□□□□ -0.25
SHMT2-221ENST00000555773 TUSC3Q13454 348 aa13.48□□□□□ -0.25
SHMT2-221ENST00000555773 FILIP1LQ4L180 1135 aa13.48□□□□□ -0.25
SHMT2-221ENST00000555773 VWA3BQ502W6 1294 aa13.48□□□□□ -0.25
SHMT2-221ENST00000555773 C9orf50Q5SZB4 431 aa13.48□□□□□ -0.25
SHMT2-221ENST00000555773 KRT39Q6A163 491 aa13.48□□□□□ -0.25
SHMT2-221ENST00000555773 SV2AQ7L0J3 742 aa13.48□□□□□ -0.25
SHMT2-221ENST00000555773 HERC6Q8IVU3 1022 aa13.48□□□□□ -0.25
SHMT2-221ENST00000555773 EFCAB13Q8IY85 973 aa13.48□□□□□ -0.25
SHMT2-221ENST00000555773 CMTR2Q8IYT2 770 aaKnown RBP13.48□□□□□ -0.25
SHMT2-221ENST00000555773 ZNF516Q92618 1163 aa13.48□□□□□ -0.25
SHMT2-221ENST00000555773 DDX27Q96GQ7 796 aaKnown RBP13.48□□□□□ -0.25
SHMT2-221ENST00000555773 UROC1Q96N76 676 aa13.48□□□□□ -0.25
SHMT2-221ENST00000555773 FAM193BQ96PV7 902 aaPredicted RBP13.48□□□□□ -0.25
SHMT2-221ENST00000555773 YME1L1Q96TA2 773 aa13.48□□□□□ -0.25
SHMT2-221ENST00000555773 NDST4Q9H3R1 872 aa13.48□□□□□ -0.25
SHMT2-221ENST00000555773 TMEM8AQ9HCN3 771 aa13.48□□□□□ -0.25
SHMT2-221ENST00000555773 SERPINC1P01008 464 aa13.47□□□□□ -0.25
SHMT2-221ENST00000555773 POMCP01189 267 aa13.47□□□□□ -0.25
SHMT2-221ENST00000555773 NFICP08651 508 aa13.47□□□□□ -0.25
SHMT2-221ENST00000555773 TRIM49P0CI25 452 aa13.47□□□□□ -0.25
SHMT2-221ENST00000555773 TRIM49CP0CI26 452 aa13.47□□□□□ -0.25
SHMT2-221ENST00000555773 PAX3P23760 479 aa13.47□□□□□ -0.25
SHMT2-221ENST00000555773 LRPAP1P30533 357 aa13.47□□□□□ -0.25
SHMT2-221ENST00000555773 GCLMP48507 274 aa13.47□□□□□ -0.25
SHMT2-221ENST00000555773 COPB1P53618 953 aaKnown RBP13.47□□□□□ -0.25
SHMT2-221ENST00000555773 RBP5P82980 135 aa13.47□□□□□ -0.25
SHMT2-221ENST00000555773 RNASELQ05823 741 aaKnown RBP13.47□□□□□ -0.25
SHMT2-221ENST00000555773 PPP3CAQ08209 521 aa13.47□□□□□ -0.25
SHMT2-221ENST00000555773 NAB2Q15742 525 aa13.47□□□□□ -0.25
SHMT2-221ENST00000555773 ZACNQ401N2 412 aa13.47□□□□□ -0.25
SHMT2-221ENST00000555773 GLRA4Q5JXX5 417 aa13.47□□□□□ -0.25
SHMT2-221ENST00000555773 FAM117BQ6P1L5 589 aa13.47□□□□□ -0.25
SHMT2-221ENST00000555773 C15orf39Q6ZRI6 1047 aa13.47□□□□□ -0.25
SHMT2-221ENST00000555773 APTXQ7Z2E3 356 aaKnown RBP13.47□□□□□ -0.25
SHMT2-221ENST00000555773 TRAPPC11Q7Z392 1133 aa13.47□□□□□ -0.25
SHMT2-221ENST00000555773 LRRC43Q8N309 656 aa13.47□□□□□ -0.25
SHMT2-221ENST00000555773 OR5B17Q8NGF7 314 aa13.47□□□□□ -0.25
SHMT2-221ENST00000555773 CXCL16Q9H2A7 254 aa13.47□□□□□ -0.25
SHMT2-221ENST00000555773 RC3H2Q9HBD1 1191 aaKnown RBP13.47□□□□□ -0.25
SHMT2-221ENST00000555773 TBC1D13Q9NVG8 400 aa13.47□□□□□ -0.25
SHMT2-221ENST00000555773 DPP3Q9NY33 737 aa13.47□□□□□ -0.25
SHMT2-221ENST00000555773 ITGA11Q9UKX5 1188 aa13.47□□□□□ -0.25
SHMT2-221ENST00000555773 COQ4Q9Y3A0 265 aa13.47□□□□□ -0.25
SHMT2-221ENST00000555773 R3HCC1Q9Y3T6 440 aaKnown RBP13.47□□□□□ -0.25
SHMT2-221ENST00000555773 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.46□□□□□ -0.25
SHMT2-221ENST00000555773 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.46□□□□□ -0.25
SHMT2-221ENST00000555773 GTPBP10A4D1E9 387 aaKnown RBP13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms