RNA–Protein interactions for RNA: ENST00000553998.5

ABCD4-220, Transcript of ATP binding cassette subfamily D member 4, humanhuman

TSL 3

Gene ABCD4, Length 478 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ABCD4-220ENST00000553998 DNASE1L2Q92874 299 aa8.54□□□□□ -1.04
ABCD4-220ENST00000553998 ZFP42Q96MM3 310 aa8.54□□□□□ -1.04
ABCD4-220ENST00000553998 IPO9Q96P70 1041 aaKnown RBP8.54□□□□□ -1.04
ABCD4-220ENST00000553998 NFKBIZQ9BYH8 718 aa8.54□□□□□ -1.04
ABCD4-220ENST00000553998 TMEM60Q9H2L4 133 aa8.54□□□□□ -1.04
ABCD4-220ENST00000553998 TRPV5Q9NQA5 729 aa8.54□□□□□ -1.04
ABCD4-220ENST00000553998 GMEB2Q9UKD1 530 aa8.54□□□□□ -1.04
ABCD4-220ENST00000553998 VAV3Q9UKW4 847 aa8.54□□□□□ -1.04
ABCD4-220ENST00000553998 USP18Q9UMW8 372 aa8.54□□□□□ -1.04
ABCD4-220ENST00000553998 MRPS17Q9Y2R5 130 aaKnown RBP8.54□□□□□ -1.04
ABCD4-220ENST00000553998 STK24Q9Y6E0 443 aa8.54□□□□□ -1.04
ABCD4-220ENST00000553998 DOCK8Q8NF50 2099 aa8.53□□□□□ -1.04
ABCD4-220ENST00000553998 MAP1BP46821 2468 aaKnown RBP8.53□□□□□ -1.04
ABCD4-220ENST00000553998 EML1O00423 815 aa8.53□□□□□ -1.04
ABCD4-220ENST00000553998 FOXD2O60548 495 aaPredicted RBP8.53□□□□□ -1.04
ABCD4-220ENST00000553998 XYLBO75191 536 aa8.53□□□□□ -1.04
ABCD4-220ENST00000553998 P4HBP07237 508 aaKnown RBP8.53□□□□□ -1.04
ABCD4-220ENST00000553998 C8AP07357 584 aa8.53□□□□□ -1.04
ABCD4-220ENST00000553998 NASPP49321 788 aaPredicted RBP8.53□□□□□ -1.04
ABCD4-220ENST00000553998 FXR2P51116 673 aaKnown RBP eCLIP8.53□□□□□ -1.04
ABCD4-220ENST00000553998 ATP2C1P98194 919 aaPredicted RBP8.53□□□□□ -1.04
ABCD4-220ENST00000553998 GRIK3Q13003 919 aa8.53□□□□□ -1.04
ABCD4-220ENST00000553998 PTGDRQ13258 359 aa8.53□□□□□ -1.04
ABCD4-220ENST00000553998 RAB33AQ14088 237 aa8.53□□□□□ -1.04
ABCD4-220ENST00000553998 NBR1Q14596 966 aa8.53□□□□□ -1.04
ABCD4-220ENST00000553998 CSRP2Q16527 193 aa8.53□□□□□ -1.04
ABCD4-220ENST00000553998 PPM1JQ5JR12 505 aa8.53□□□□□ -1.04
ABCD4-220ENST00000553998 PPM1LQ5SGD2 360 aa8.53□□□□□ -1.04
ABCD4-220ENST00000553998 PLA2G4FQ68DD2 849 aa8.53□□□□□ -1.04
ABCD4-220ENST00000553998 NOTUMQ6P988 496 aa8.53□□□□□ -1.04
ABCD4-220ENST00000553998 POTEHQ6S545 545 aa8.53□□□□□ -1.04
ABCD4-220ENST00000553998 PRSS55Q6UWB4 352 aaPredicted RBP8.53□□□□□ -1.04
ABCD4-220ENST00000553998 NPAS3Q8IXF0 933 aa8.53□□□□□ -1.04
ABCD4-220ENST00000553998 C4orf19Q8IY42 314 aa8.53□□□□□ -1.04
ABCD4-220ENST00000553998 RNF149Q8NC42 400 aa8.53□□□□□ -1.04
ABCD4-220ENST00000553998 TMEM143Q96AN5 459 aa8.53□□□□□ -1.04
ABCD4-220ENST00000553998 CEP170P1Q96L14 293 aa8.53□□□□□ -1.04
ABCD4-220ENST00000553998 TTPALQ9BTX7 342 aa8.53□□□□□ -1.04
ABCD4-220ENST00000553998 RAB34Q9BZG1 259 aa8.53□□□□□ -1.04
ABCD4-220ENST00000553998 PLA2G2FQ9BZM2 168 aa8.53□□□□□ -1.04
ABCD4-220ENST00000553998 CHRDQ9H2X0 955 aa8.53□□□□□ -1.04
ABCD4-220ENST00000553998 TTC12Q9H892 705 aaPredicted RBP8.53□□□□□ -1.04
ABCD4-220ENST00000553998 GDE1Q9NZC3 331 aa8.53□□□□□ -1.04
ABCD4-220ENST00000553998 WRAP73Q9P2S5 460 aaPredicted RBP8.53□□□□□ -1.04
ABCD4-220ENST00000553998 DNMT3BQ9UBC3 853 aaKnown RBP8.53□□□□□ -1.04
ABCD4-220ENST00000553998 CFAP45Q9UL16 551 aa8.53□□□□□ -1.04
ABCD4-220ENST00000553998 PCDHA12Q9UN75 941 aa8.53□□□□□ -1.04
ABCD4-220ENST00000553998 ZDHHC9Q9Y397 364 aa8.53□□□□□ -1.04
ABCD4-220ENST00000553998 HES2Q9Y543 173 aa8.53□□□□□ -1.04
ABCD4-220ENST00000553998 SF3B1O75533 1304 aaKnown RBP eCLIP8.53□□□□□ -1.04
ABCD4-220ENST00000553998 A0A1B0GUA9 196 aa8.52□□□□□ -1.05
ABCD4-220ENST00000553998 MAN2B1O00754 1011 aa8.52□□□□□ -1.05
ABCD4-220ENST00000553998 TM4SF5O14894 197 aa8.52□□□□□ -1.05
ABCD4-220ENST00000553998 TADA2AO75478 443 aa8.52□□□□□ -1.05
ABCD4-220ENST00000553998 MICAL2O94851 1124 aa8.52□□□□□ -1.05
ABCD4-220ENST00000553998 ERLIN2O94905 339 aa8.52□□□□□ -1.05
ABCD4-220ENST00000553998 PAPSS2O95340 614 aaPredicted RBP8.52□□□□□ -1.05
ABCD4-220ENST00000553998 YEATS4O95619 227 aa8.52□□□□□ -1.05
ABCD4-220ENST00000553998 PMLP29590 882 aa8.52□□□□□ -1.05
ABCD4-220ENST00000553998 CNR2P34972 360 aa8.52□□□□□ -1.05
ABCD4-220ENST00000553998 TXKP42681 527 aa8.52□□□□□ -1.05
ABCD4-220ENST00000553998 MLLT6P55198 1093 aaPredicted RBP8.52□□□□□ -1.05
ABCD4-220ENST00000553998 SHC2P98077 582 aa8.52□□□□□ -1.05
ABCD4-220ENST00000553998 SPIRE1Q08AE8 756 aa8.52□□□□□ -1.05
ABCD4-220ENST00000553998 NCBP1Q09161 790 aaKnown RBP8.52□□□□□ -1.05
ABCD4-220ENST00000553998 SPEM2Q0P670 501 aa8.52□□□□□ -1.05
ABCD4-220ENST00000553998 PDIA5Q14554 519 aa8.52□□□□□ -1.05
ABCD4-220ENST00000553998 HSP90AA2PQ14568 343 aaPredicted RBP8.52□□□□□ -1.05
ABCD4-220ENST00000553998 MXD4Q14582 209 aaPredicted RBP8.52□□□□□ -1.05
ABCD4-220ENST00000553998 SLC39A14Q15043 492 aa8.52□□□□□ -1.05
ABCD4-220ENST00000553998 PTPAQ15257 358 aa8.52□□□□□ -1.05
ABCD4-220ENST00000553998 EPHA7Q15375 998 aa8.52□□□□□ -1.05
ABCD4-220ENST00000553998 SF3A1Q15459 793 aaKnown RBP8.52□□□□□ -1.05
ABCD4-220ENST00000553998 NAB2Q15742 525 aa8.52□□□□□ -1.05
ABCD4-220ENST00000553998 LIN9Q5TKA1 542 aa8.52□□□□□ -1.05
ABCD4-220ENST00000553998 FOXD4L5Q5VV16 416 aaPredicted RBP8.52□□□□□ -1.05
ABCD4-220ENST00000553998 FAM173BQ6P4H8 233 aa8.52□□□□□ -1.05
ABCD4-220ENST00000553998 PDXDC1Q6P996 788 aa8.52□□□□□ -1.05
ABCD4-220ENST00000553998 DTHD1Q6ZMT9 781 aa8.52□□□□□ -1.05
ABCD4-220ENST00000553998 TPRG1Q6ZUI0 275 aa8.52□□□□□ -1.05
ABCD4-220ENST00000553998 GLYCTKQ8IVS8 523 aa8.52□□□□□ -1.05
ABCD4-220ENST00000553998 HACE1Q8IYU2 909 aa8.52□□□□□ -1.05
ABCD4-220ENST00000553998 ERMNQ8TAM6 284 aa8.52□□□□□ -1.05
ABCD4-220ENST00000553998 FOXD4L4Q8WXT5 416 aaPredicted RBP8.52□□□□□ -1.05
ABCD4-220ENST00000553998 DDX1Q92499 740 aaKnown RBP8.52□□□□□ -1.05
ABCD4-220ENST00000553998 ELSPBP1Q96BH3 223 aa8.52□□□□□ -1.05
ABCD4-220ENST00000553998 USP28Q96RU2 1077 aa8.52□□□□□ -1.05
ABCD4-220ENST00000553998 KXD1Q9BQD3 176 aa8.52□□□□□ -1.05
ABCD4-220ENST00000553998 NXF3Q9H4D5 531 aaKnown RBP8.52□□□□□ -1.05
ABCD4-220ENST00000553998 XPNPEP1Q9NQW7 623 aa8.52□□□□□ -1.05
ABCD4-220ENST00000553998 SEMA4GQ9NTN9 838 aa8.52□□□□□ -1.05
ABCD4-220ENST00000553998 CHMP5Q9NZZ3 219 aa8.52□□□□□ -1.05
ABCD4-220ENST00000553998 DYNC1LI1Q9Y6G9 523 aaKnown RBP8.52□□□□□ -1.05
ABCD4-220ENST00000553998 CACNA1GO43497 2377 aa8.52□□□□□ -1.05
ABCD4-220ENST00000553998 CCL16O15467 120 aa8.51□□□□□ -1.05
ABCD4-220ENST00000553998 ADAM12O43184 909 aa8.51□□□□□ -1.05
ABCD4-220ENST00000553998 ARF4P18085 180 aaPredicted RBP8.51□□□□□ -1.05
ABCD4-220ENST00000553998 FCARP24071 287 aa8.51□□□□□ -1.05
ABCD4-220ENST00000553998 YWHABP31946 246 aaKnown RBP8.51□□□□□ -1.05
ABCD4-220ENST00000553998 LIMK1P53667 647 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms