RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 PLEKHO2Q8TD55 490 aa13.27□□□□□ -0.29
SHMT2-209ENST00000553949 TMC2Q8TDI7 906 aa13.27□□□□□ -0.29
SHMT2-209ENST00000553949 PARD3BQ8TEW8 1205 aa13.27□□□□□ -0.29
SHMT2-209ENST00000553949 KIF12Q96FN5 646 aa13.27□□□□□ -0.29
SHMT2-209ENST00000553949 FAM193BQ96PV7 902 aaPredicted RBP13.27□□□□□ -0.29
SHMT2-209ENST00000553949 FNBP1Q96RU3 617 aa13.27□□□□□ -0.29
SHMT2-209ENST00000553949 POP1Q99575 1024 aaKnown RBP13.27□□□□□ -0.29
SHMT2-209ENST00000553949 PBX4Q9BYU1 374 aa13.27□□□□□ -0.29
SHMT2-209ENST00000553949 TSPY26PQ9H489 355 aa13.27□□□□□ -0.29
SHMT2-209ENST00000553949 SLC38A7Q9NVC3 462 aa13.27□□□□□ -0.29
SHMT2-209ENST00000553949 HCSTQ9UBK5 93 aa13.27□□□□□ -0.29
SHMT2-209ENST00000553949 ARMCX3Q9UH62 379 aaPredicted RBP13.27□□□□□ -0.29
SHMT2-209ENST00000553949 MRPL42Q9Y6G3 142 aaKnown RBP13.27□□□□□ -0.29
SHMT2-209ENST00000553949 COL4A6Q14031 1691 aa13.27□□□□□ -0.29
SHMT2-209ENST00000553949 IKBKBO14920 756 aa13.26□□□□□ -0.29
SHMT2-209ENST00000553949 B4GALT3O60512 393 aa13.26□□□□□ -0.29
SHMT2-209ENST00000553949 DDHD2O94830 711 aa13.26□□□□□ -0.29
SHMT2-209ENST00000553949 LAMA2P24043 3122 aaKnown RBP13.26□□□□□ -0.29
SHMT2-209ENST00000553949 VAMP7P51809 220 aa13.26□□□□□ -0.29
SHMT2-209ENST00000553949 MCCD1P59942 119 aaPredicted RBP13.26□□□□□ -0.29
SHMT2-209ENST00000553949 DLG4P78352 724 aa13.26□□□□□ -0.29
SHMT2-209ENST00000553949 CLDN10P78369 228 aa13.26□□□□□ -0.29
SHMT2-209ENST00000553949 TFAMQ00059 246 aaKnown RBP13.26□□□□□ -0.29
SHMT2-209ENST00000553949 ENPEPQ07075 957 aa13.26□□□□□ -0.29
SHMT2-209ENST00000553949 DSC1Q08554 894 aa13.26□□□□□ -0.29
SHMT2-209ENST00000553949 PTPRJQ12913 1337 aa13.26□□□□□ -0.29
SHMT2-209ENST00000553949 BFSP1Q12934 665 aa13.26□□□□□ -0.29
SHMT2-209ENST00000553949 TUSC3Q13454 348 aa13.26□□□□□ -0.29
SHMT2-209ENST00000553949 NCAPHQ15003 741 aa13.26□□□□□ -0.29
SHMT2-209ENST00000553949 RAB30Q15771 203 aa13.26□□□□□ -0.29
SHMT2-209ENST00000553949 USP37Q86T82 979 aa13.26□□□□□ -0.29
SHMT2-209ENST00000553949 NT5DC4Q86YG4 428 aa13.26□□□□□ -0.29
SHMT2-209ENST00000553949 ZNF280BQ86YH2 543 aa13.26□□□□□ -0.29
SHMT2-209ENST00000553949 IRF2BP1Q8IU81 584 aa13.26□□□□□ -0.29
SHMT2-209ENST00000553949 WDR49Q8IV35 697 aa13.26□□□□□ -0.29
SHMT2-209ENST00000553949 FIBCD1Q8N539 461 aa13.26□□□□□ -0.29
SHMT2-209ENST00000553949 AOPEPQ8N6M6 819 aa13.26□□□□□ -0.29
SHMT2-209ENST00000553949 C18orf25Q96B23 403 aaPredicted RBP13.26□□□□□ -0.29
SHMT2-209ENST00000553949 CGRRF1Q99675 332 aa13.26□□□□□ -0.29
SHMT2-209ENST00000553949 CWH43Q9H720 699 aa13.26□□□□□ -0.29
SHMT2-209ENST00000553949 NRDE2Q9H7Z3 1164 aa13.26□□□□□ -0.29
SHMT2-209ENST00000553949 CBX8Q9HC52 389 aa13.26□□□□□ -0.29
SHMT2-209ENST00000553949 METTL14Q9HCE5 456 aaKnown RBP13.26□□□□□ -0.29
SHMT2-209ENST00000553949 SAMSN1Q9NSI8 373 aaKnown RBP13.26□□□□□ -0.29
SHMT2-209ENST00000553949 TUBGCP4Q9UGJ1 667 aa13.26□□□□□ -0.29
SHMT2-209ENST00000553949 UBQLN1Q9UMX0 589 aaKnown RBP13.26□□□□□ -0.29
SHMT2-209ENST00000553949 YBX2Q9Y2T7 364 aaKnown RBP13.26□□□□□ -0.29
SHMT2-209ENST00000553949 GTF3C5Q9Y5Q8 519 aaPredicted RBP13.26□□□□□ -0.29
SHMT2-209ENST00000553949 LAMA3Q16787 3333 aa13.26□□□□□ -0.29
SHMT2-209ENST00000553949 PTPRSQ13332 1948 aa13.25□□□□□ -0.29
SHMT2-209ENST00000553949 LRRIQ3A6PVS8 624 aaPredicted RBP13.25□□□□□ -0.29
SHMT2-209ENST00000553949 SMTNL1A8MU46 457 aa13.25□□□□□ -0.29
SHMT2-209ENST00000553949 XPOTO43592 962 aaKnown RBP13.25□□□□□ -0.29
SHMT2-209ENST00000553949 CA3P07451 260 aa13.25□□□□□ -0.29
SHMT2-209ENST00000553949 TRIM49P0CI25 452 aa13.25□□□□□ -0.29
SHMT2-209ENST00000553949 TRIM49CP0CI26 452 aa13.25□□□□□ -0.29
SHMT2-209ENST00000553949 TNNI1P19237 187 aa13.25□□□□□ -0.29
SHMT2-209ENST00000553949 CYP3A5P20815 502 aa13.25□□□□□ -0.29
SHMT2-209ENST00000553949 MARSP56192 900 aaKnown RBP13.25□□□□□ -0.29
SHMT2-209ENST00000553949 SMAD3P84022 425 aaKnown RBP13.25□□□□□ -0.29
SHMT2-209ENST00000553949 SOX4Q06945 474 aaPredicted RBP13.25□□□□□ -0.29
SHMT2-209ENST00000553949 IQCB1Q15051 598 aa13.25□□□□□ -0.29
SHMT2-209ENST00000553949 LRIT3Q3SXY7 679 aa13.25□□□□□ -0.29
SHMT2-209ENST00000553949 HSP90AA4PQ58FG1 418 aa13.25□□□□□ -0.29
SHMT2-209ENST00000553949 C1orf220Q5T0J3 134 aa13.25□□□□□ -0.29
SHMT2-209ENST00000553949 SPOUT1Q5T280 376 aaKnown RBP13.25□□□□□ -0.29
SHMT2-209ENST00000553949 LMBRD2Q68DH5 695 aaPredicted RBP13.25□□□□□ -0.29
SHMT2-209ENST00000553949 CREBRFQ8IUR6 639 aa13.25□□□□□ -0.29
SHMT2-209ENST00000553949 FAM114A1Q8IWE2 563 aa13.25□□□□□ -0.29
SHMT2-209ENST00000553949 COLGALT2Q8IYK4 626 aa13.25□□□□□ -0.29
SHMT2-209ENST00000553949 BEST2Q8NFU1 509 aa13.25□□□□□ -0.29
SHMT2-209ENST00000553949 OR5B17Q8NGF7 314 aa13.25□□□□□ -0.29
SHMT2-209ENST00000553949 FAM200AQ8TCP9 573 aa13.25□□□□□ -0.29
SHMT2-209ENST00000553949 CACTINQ8WUQ7 758 aaKnown RBP13.25□□□□□ -0.29
SHMT2-209ENST00000553949 FAM84AQ96KN4 292 aa13.25□□□□□ -0.29
SHMT2-209ENST00000553949 CNOT6LQ96LI5 555 aaKnown RBP13.25□□□□□ -0.29
SHMT2-209ENST00000553949 TMEM175Q9BSA9 504 aa13.25□□□□□ -0.29
SHMT2-209ENST00000553949 ANP32EQ9BTT0 268 aa13.25□□□□□ -0.29
SHMT2-209ENST00000553949 INTS13Q9NVM9 706 aa13.25□□□□□ -0.29
SHMT2-209ENST00000553949 FANCLQ9NW38 375 aa13.25□□□□□ -0.29
SHMT2-209ENST00000553949 MAGEC2Q9UBF1 373 aaPredicted RBP13.25□□□□□ -0.29
SHMT2-209ENST00000553949 DNAJB4Q9UDY4 337 aa13.25□□□□□ -0.29
SHMT2-209ENST00000553949 MSRAQ9UJ68 235 aa13.25□□□□□ -0.29
SHMT2-209ENST00000553949 LINC01553A4QN01 128 aa13.24□□□□□ -0.29
SHMT2-209ENST00000553949 CASTOR2A6NHX0 329 aa13.24□□□□□ -0.29
SHMT2-209ENST00000553949 BECN2A8MW95 431 aa13.24□□□□□ -0.29
SHMT2-209ENST00000553949 ZC3H11AO75152 810 aaKnown RBP eCLIP13.24□□□□□ -0.29
SHMT2-209ENST00000553949 ARHGEF15O94989 841 aa13.24□□□□□ -0.29
SHMT2-209ENST00000553949 LINC00271P0C7V0 271 aa13.24□□□□□ -0.29
SHMT2-209ENST00000553949 LAG3P18627 525 aa13.24□□□□□ -0.29
SHMT2-209ENST00000553949 GUCY2FP51841 1108 aa13.24□□□□□ -0.29
SHMT2-209ENST00000553949 AP3M2P53677 418 aa13.24□□□□□ -0.29
SHMT2-209ENST00000553949 DUOXA2Q1HG44 320 aa13.24□□□□□ -0.29
SHMT2-209ENST00000553949 DCAF17Q5H9S7 520 aaPredicted RBP13.24□□□□□ -0.29
SHMT2-209ENST00000553949 CDKAL1Q5VV42 579 aa13.24□□□□□ -0.29
SHMT2-209ENST00000553949 LUZP1Q86V48 1076 aa13.24□□□□□ -0.29
SHMT2-209ENST00000553949 TRIM59Q8IWR1 403 aa13.24□□□□□ -0.29
SHMT2-209ENST00000553949 TMEM130Q8N3G9 435 aa13.24□□□□□ -0.29
SHMT2-209ENST00000553949 ZNF516Q92618 1163 aa13.24□□□□□ -0.29
SHMT2-209ENST00000553949 CLP1Q92989 425 aaKnown RBP13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms