RNA–Protein interactions for RNA: ENST00000553888.5

VIPAS39-206, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 2 BASIC

Gene VIPAS39, Length 2,934 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-206ENST00000553888 CGRRF1Q99675 332 aa13.72□□□□□ -0.21
VIPAS39-206ENST00000553888 PTPRHQ9HD43 1115 aa13.72□□□□□ -0.21
VIPAS39-206ENST00000553888 C1orf112Q9NSG2 853 aa13.72□□□□□ -0.21
VIPAS39-206ENST00000553888 ZNF446Q9NWS9 450 aa13.72□□□□□ -0.21
VIPAS39-206ENST00000553888 PASKQ96RG2 1323 aa13.72□□□□□ -0.21
VIPAS39-206ENST00000553888 GPR25O00155 361 aa13.72□□□□□ -0.21
VIPAS39-206ENST00000553888 ACKR2O00590 384 aa13.72□□□□□ -0.21
VIPAS39-206ENST00000553888 MEFVO15553 781 aaPredicted RBP13.72□□□□□ -0.21
VIPAS39-206ENST00000553888 LDHAP00338 332 aaKnown RBP13.72□□□□□ -0.21
VIPAS39-206ENST00000553888 H2AFXP16104 143 aaPredicted RBP13.72□□□□□ -0.21
VIPAS39-206ENST00000553888 TFDP1Q14186 410 aa13.72□□□□□ -0.21
VIPAS39-206ENST00000553888 DGKDQ16760 1214 aa13.72□□□□□ -0.21
VIPAS39-206ENST00000553888 IQSEC1Q6DN90 963 aa13.72□□□□□ -0.21
VIPAS39-206ENST00000553888 BRSK2Q8IWQ3 736 aa13.72□□□□□ -0.21
VIPAS39-206ENST00000553888 ZBTB9Q96C00 473 aa13.72□□□□□ -0.21
VIPAS39-206ENST00000553888 FAM49AQ9H0Q0 323 aaPredicted RBP13.72□□□□□ -0.21
VIPAS39-206ENST00000553888 CDT1Q9H211 546 aa13.72□□□□□ -0.21
VIPAS39-206ENST00000553888 GNEQ9Y223 722 aaKnown RBP13.72□□□□□ -0.21
VIPAS39-206ENST00000553888 NUB1Q9Y5A7 615 aa13.72□□□□□ -0.21
VIPAS39-206ENST00000553888 OGTO15294 1046 aa13.71□□□□□ -0.21
VIPAS39-206ENST00000553888 CXCL8P10145 99 aa13.71□□□□□ -0.21
VIPAS39-206ENST00000553888 CYP11B1P15538 503 aa13.71□□□□□ -0.21
VIPAS39-206ENST00000553888 PROZP22891 400 aa13.71□□□□□ -0.21
VIPAS39-206ENST00000553888 FMO1Q01740 532 aa13.71□□□□□ -0.21
VIPAS39-206ENST00000553888 MCL1Q07820 350 aa13.71□□□□□ -0.21
VIPAS39-206ENST00000553888 MPZL3Q6UWV2 235 aa13.71□□□□□ -0.21
VIPAS39-206ENST00000553888 TSHZ1Q6ZSZ6 1077 aa13.71□□□□□ -0.21
VIPAS39-206ENST00000553888 TLK2Q86UE8 772 aa13.71□□□□□ -0.21
VIPAS39-206ENST00000553888 EFCAB13Q8IY85 973 aa13.71□□□□□ -0.21
VIPAS39-206ENST00000553888 TPCN2Q8NHX9 752 aa13.71□□□□□ -0.21
VIPAS39-206ENST00000553888 SLC35G2Q8TBE7 412 aa13.71□□□□□ -0.21
VIPAS39-206ENST00000553888 NLRP7Q8WX94 980 aa13.71□□□□□ -0.21
VIPAS39-206ENST00000553888 JPH2Q9BR39 696 aaPredicted RBP13.71□□□□□ -0.21
VIPAS39-206ENST00000553888 C2orf40Q9H1Z8 148 aa13.71□□□□□ -0.21
VIPAS39-206ENST00000553888 CPSF3Q9UKF6 684 aaKnown RBP13.71□□□□□ -0.21
VIPAS39-206ENST00000553888 COG5Q9UP83 839 aa13.71□□□□□ -0.21
VIPAS39-206ENST00000553888 PHACTR2O75167 634 aa13.71□□□□□ -0.21
VIPAS39-206ENST00000553888 TBC1D8O95759 1140 aa13.71□□□□□ -0.21
VIPAS39-206ENST00000553888 FTLP02792 175 aaPredicted RBP13.71□□□□□ -0.21
VIPAS39-206ENST00000553888 CFHP08603 1231 aa13.71□□□□□ -0.21
VIPAS39-206ENST00000553888 AMHR2Q16671 573 aa13.71□□□□□ -0.21
VIPAS39-206ENST00000553888 KIZQ2M2Z5 673 aa13.71□□□□□ -0.21
VIPAS39-206ENST00000553888 C10orf76Q5T2E6 689 aa13.71□□□□□ -0.21
VIPAS39-206ENST00000553888 LRRC57Q8N9N7 239 aa13.71□□□□□ -0.21
VIPAS39-206ENST00000553888 LMBR1Q8WVP7 490 aa13.71□□□□□ -0.21
VIPAS39-206ENST00000553888 KAT2BQ92831 832 aa13.71□□□□□ -0.21
VIPAS39-206ENST00000553888 SCLT1Q96NL6 688 aa13.71□□□□□ -0.21
VIPAS39-206ENST00000553888 CCDC172P0C7W6 258 aa13.7□□□□□ -0.22
VIPAS39-206ENST00000553888 ZNF200P98182 395 aaPredicted RBP13.7□□□□□ -0.22
VIPAS39-206ENST00000553888 TFAMQ00059 246 aaKnown RBP13.7□□□□□ -0.22
VIPAS39-206ENST00000553888 MEI1Q5TIA1 1274 aa13.7□□□□□ -0.22
VIPAS39-206ENST00000553888 KIAA0319LQ8IZA0 1049 aa13.7□□□□□ -0.22
VIPAS39-206ENST00000553888 TXLNBQ8N3L3 684 aa13.7□□□□□ -0.22
VIPAS39-206ENST00000553888 RABGGTAQ92696 567 aa13.7□□□□□ -0.22
VIPAS39-206ENST00000553888 USP6NLQ92738 828 aa13.7□□□□□ -0.22
VIPAS39-206ENST00000553888 CDHR5Q9HBB8 845 aa13.7□□□□□ -0.22
VIPAS39-206ENST00000553888 GJD2Q9UKL4 321 aa13.7□□□□□ -0.22
VIPAS39-206ENST00000553888 CITO14578 2027 aa13.7□□□□□ -0.22
VIPAS39-206ENST00000553888 TNPO2O14787 897 aaKnown RBP13.7□□□□□ -0.22
VIPAS39-206ENST00000553888 KIAA0391O15091 583 aaKnown RBP13.7□□□□□ -0.22
VIPAS39-206ENST00000553888 CAP1Q01518 475 aa13.7□□□□□ -0.22
VIPAS39-206ENST00000553888 NCOA4Q13772 614 aa13.7□□□□□ -0.22
VIPAS39-206ENST00000553888 TUBB2AQ13885 445 aa13.7□□□□□ -0.22
VIPAS39-206ENST00000553888 C2CD6Q53TS8 623 aa13.7□□□□□ -0.22
VIPAS39-206ENST00000553888 PHLDB2Q86SQ0 1253 aa13.7□□□□□ -0.22
VIPAS39-206ENST00000553888 EXOC8Q8IYI6 725 aa13.7□□□□□ -0.22
VIPAS39-206ENST00000553888 DDX1Q92499 740 aaKnown RBP13.7□□□□□ -0.22
VIPAS39-206ENST00000553888 TUBB2BQ9BVA1 445 aa13.7□□□□□ -0.22
VIPAS39-206ENST00000553888 HOXC6P09630 235 aa13.7□□□□□ -0.22
VIPAS39-206ENST00000553888 HOXD8P13378 290 aaPredicted RBP13.7□□□□□ -0.22
VIPAS39-206ENST00000553888 ARF4P18085 180 aaPredicted RBP13.7□□□□□ -0.22
VIPAS39-206ENST00000553888 ANXA13P27216 316 aa13.7□□□□□ -0.22
VIPAS39-206ENST00000553888 PHKA2P46019 1235 aa13.7□□□□□ -0.22
VIPAS39-206ENST00000553888 MYL6P60660 151 aa13.7□□□□□ -0.22
VIPAS39-206ENST00000553888 NOP14P78316 857 aaKnown RBP13.7□□□□□ -0.22
VIPAS39-206ENST00000553888 WDR44Q5JSH3 913 aa13.7□□□□□ -0.22
VIPAS39-206ENST00000553888 RUFY4Q6ZNE9 571 aa13.7□□□□□ -0.22
VIPAS39-206ENST00000553888 CXCL16Q9H2A7 254 aa13.7□□□□□ -0.22
VIPAS39-206ENST00000553888 BTNL10A8MVZ5 291 aa13.69□□□□□ -0.22
VIPAS39-206ENST00000553888 BUB1BO60566 1050 aaPredicted RBP13.69□□□□□ -0.22
VIPAS39-206ENST00000553888 ZMYND10O75800 440 aa13.69□□□□□ -0.22
VIPAS39-206ENST00000553888 GCNT1Q02742 428 aa13.69□□□□□ -0.22
VIPAS39-206ENST00000553888 CYP4F22Q6NT55 531 aa13.69□□□□□ -0.22
VIPAS39-206ENST00000553888 LLGL2Q6P1M3 1020 aa13.69□□□□□ -0.22
VIPAS39-206ENST00000553888 CPNE8Q86YQ8 564 aa13.69□□□□□ -0.22
VIPAS39-206ENST00000553888 GPR161Q8N6U8 529 aaKnown RBP13.69□□□□□ -0.22
VIPAS39-206ENST00000553888 CTNNBL1Q8WYA6 563 aaPredicted RBP13.69□□□□□ -0.22
VIPAS39-206ENST00000553888 PLEKHA4Q9H4M7 779 aa13.69□□□□□ -0.22
VIPAS39-206ENST00000553888 PDZD7Q9H5P4 517 aa13.69□□□□□ -0.22
VIPAS39-206ENST00000553888 SLC5A4Q9NY91 659 aa13.69□□□□□ -0.22
VIPAS39-206ENST00000553888 TLL2Q9Y6L7 1015 aa13.69□□□□□ -0.22
VIPAS39-206ENST00000553888 MYADML2A6NDP7 307 aa13.69□□□□□ -0.22
VIPAS39-206ENST00000553888 SPDYE4A6NLX3 237 aa13.69□□□□□ -0.22
VIPAS39-206ENST00000553888 MAGEB2O15479 319 aa13.69□□□□□ -0.22
VIPAS39-206ENST00000553888 TMEM253P0C7T8 217 aa13.69□□□□□ -0.22
VIPAS39-206ENST00000553888 SMIM10L2AP0DMW4 78 aa13.69□□□□□ -0.22
VIPAS39-206ENST00000553888 SMIM10L2BP0DMW5 78 aa13.69□□□□□ -0.22
VIPAS39-206ENST00000553888 SCP2P22307 547 aa13.69□□□□□ -0.22
VIPAS39-206ENST00000553888 PDE6CP51160 858 aa13.69□□□□□ -0.22
VIPAS39-206ENST00000553888 SCARA5Q6ZMJ2 495 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms