RNA–Protein interactions for RNA: ENST00000551655.1

VPS29-209, Transcript of VPS29, retromer complex component, humanhuman

TSL 5

Gene VPS29, Length 766 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-209ENST00000551655 JPH2Q9BR39 696 aaPredicted RBP16.07■□□□□ 0.16
VPS29-209ENST00000551655 EDEM2Q9BV94 578 aa16.07■□□□□ 0.16
VPS29-209ENST00000551655 TRIM6Q9C030 488 aaPredicted RBP16.07■□□□□ 0.16
VPS29-209ENST00000551655 C6orf50Q9HD87 102 aa16.07■□□□□ 0.16
VPS29-209ENST00000551655 IGSF10Q6WRI0 2623 aa16.07■□□□□ 0.16
VPS29-209ENST00000551655 ESYT2A0FGR8 921 aa16.06■□□□□ 0.16
VPS29-209ENST00000551655 WDR27A2RRH5 827 aa16.06■□□□□ 0.16
VPS29-209ENST00000551655 GOLGA8AA7E2F4 631 aa16.06■□□□□ 0.16
VPS29-209ENST00000551655 GOLGA8BA8MQT2 603 aa16.06■□□□□ 0.16
VPS29-209ENST00000551655 INO80B-WBP1J3KQ70 363 aa16.06■□□□□ 0.16
VPS29-209ENST00000551655 ARNTLO00327 626 aa16.06■□□□□ 0.16
VPS29-209ENST00000551655 EML1O00423 815 aa16.06■□□□□ 0.16
VPS29-209ENST00000551655 ZBTB43O43298 467 aa16.06■□□□□ 0.16
VPS29-209ENST00000551655 EXTL3O43909 919 aa16.06■□□□□ 0.16
VPS29-209ENST00000551655 TDP2O95551 362 aa16.06■□□□□ 0.16
VPS29-209ENST00000551655 PSMC3P17980 439 aa16.06■□□□□ 0.16
VPS29-209ENST00000551655 ARF4P18085 180 aaPredicted RBP16.06■□□□□ 0.16
VPS29-209ENST00000551655 RBM25P49756 843 aaKnown RBP16.06■□□□□ 0.16
VPS29-209ENST00000551655 TUSC3Q13454 348 aa16.06■□□□□ 0.16
VPS29-209ENST00000551655 AMHR2Q16671 573 aa16.06■□□□□ 0.16
VPS29-209ENST00000551655 SH3PXD2AQ5TCZ1 1133 aa16.06■□□□□ 0.16
VPS29-209ENST00000551655 PKN3Q6P5Z2 889 aa16.06■□□□□ 0.16
VPS29-209ENST00000551655 FERMT3Q86UX7 667 aa16.06■□□□□ 0.16
VPS29-209ENST00000551655 RDM1Q8NG50 284 aa16.06■□□□□ 0.16
VPS29-209ENST00000551655 GAB3Q8WWW8 586 aa16.06■□□□□ 0.16
VPS29-209ENST00000551655 RSPRY1Q96DX4 576 aa16.06■□□□□ 0.16
VPS29-209ENST00000551655 DHX33Q9H6R0 707 aaKnown RBP16.06■□□□□ 0.16
VPS29-209ENST00000551655 ZNF263O14978 683 aa16.05■□□□□ 0.16
VPS29-209ENST00000551655 RPP40O75818 363 aaKnown RBP16.05■□□□□ 0.16
VPS29-209ENST00000551655 PTPN2P17706 415 aa16.05■□□□□ 0.16
VPS29-209ENST00000551655 PSMC5P62195 406 aa16.05■□□□□ 0.16
VPS29-209ENST00000551655 LRRC32Q14392 662 aa16.05■□□□□ 0.16
VPS29-209ENST00000551655 EMC2Q15006 297 aa16.05■□□□□ 0.16
VPS29-209ENST00000551655 SOWAHCQ53LP3 525 aaPredicted RBP16.05■□□□□ 0.16
VPS29-209ENST00000551655 CACNA2D4Q7Z3S7 1137 aa16.05■□□□□ 0.16
VPS29-209ENST00000551655 GPIHBP1Q8IV16 184 aa16.05■□□□□ 0.16
VPS29-209ENST00000551655 HS6ST3Q8IZP7 471 aa16.05■□□□□ 0.16
VPS29-209ENST00000551655 CCDC51Q96ER9 411 aa16.05■□□□□ 0.16
VPS29-209ENST00000551655 LOXL4Q96JB6 756 aa16.05■□□□□ 0.16
VPS29-209ENST00000551655 RWDD1Q9H446 243 aaPredicted RBP16.05■□□□□ 0.16
VPS29-209ENST00000551655 TRPV5Q9NQA5 729 aa16.05■□□□□ 0.16
VPS29-209ENST00000551655 AVENQ9NQS1 362 aaPredicted RBP16.05■□□□□ 0.16
VPS29-209ENST00000551655 POLR3BQ9NW08 1133 aaPredicted RBP16.05■□□□□ 0.16
VPS29-209ENST00000551655 MTRRQ9UBK8 725 aa16.05■□□□□ 0.16
VPS29-209ENST00000551655 ADAMTS20P59510 1910 aa16.05■□□□□ 0.16
VPS29-209ENST00000551655 KIF26AQ9ULI4 1882 aaPredicted RBP16.04■□□□□ 0.16
VPS29-209ENST00000551655 I3L4J1 428 aa16.04■□□□□ 0.16
VPS29-209ENST00000551655 PTGESO14684 152 aa16.04■□□□□ 0.16
VPS29-209ENST00000551655 MOSPD3O75425 235 aa16.04■□□□□ 0.16
VPS29-209ENST00000551655 CCDC192P0DO97 292 aa16.04■□□□□ 0.16
VPS29-209ENST00000551655 AXLP30530 894 aa16.04■□□□□ 0.16
VPS29-209ENST00000551655 ADD1P35611 737 aaKnown RBP16.04■□□□□ 0.16
VPS29-209ENST00000551655 PTENP60484 403 aa16.04■□□□□ 0.16
VPS29-209ENST00000551655 MBTD1Q05BQ5 628 aa16.04■□□□□ 0.16
VPS29-209ENST00000551655 SMARCD2Q92925 531 aa16.04■□□□□ 0.16
VPS29-209ENST00000551655 ZBTB39O15060 712 aa16.03■□□□□ 0.16
VPS29-209ENST00000551655 LRG1P02750 347 aa16.03■□□□□ 0.16
VPS29-209ENST00000551655 FGFR3P22607 806 aa16.03■□□□□ 0.16
VPS29-209ENST00000551655 TKTP29401 623 aaKnown RBP16.03■□□□□ 0.16
VPS29-209ENST00000551655 KPNA1P52294 538 aaPredicted RBP16.03■□□□□ 0.16
VPS29-209ENST00000551655 PON2Q15165 354 aa16.03■□□□□ 0.16
VPS29-209ENST00000551655 CREB3L3Q68CJ9 461 aa16.03■□□□□ 0.16
VPS29-209ENST00000551655 C19orf48Q6RUI8 117 aa16.03■□□□□ 0.16
VPS29-209ENST00000551655 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.03■□□□□ 0.16
VPS29-209ENST00000551655 ZSCAN18Q8TBC5 510 aaPredicted RBP16.03■□□□□ 0.16
VPS29-209ENST00000551655 CSGALNACT1Q8TDX6 532 aa16.03■□□□□ 0.16
VPS29-209ENST00000551655 VPS45Q9NRW7 570 aa16.03■□□□□ 0.16
VPS29-209ENST00000551655 SNTG2Q9NY99 539 aa16.03■□□□□ 0.16
VPS29-209ENST00000551655 BPTFQ12830 3046 aa16.03■□□□□ 0.16
VPS29-209ENST00000551655 KLF18A0A0U1RQI7 1052 aa16.02■□□□□ 0.16
VPS29-209ENST00000551655 HEPACAM2A8MVW5 462 aa16.02■□□□□ 0.16
VPS29-209ENST00000551655 HYAL3O43820 417 aaPredicted RBP16.02■□□□□ 0.16
VPS29-209ENST00000551655 SEC24AO95486 1093 aa16.02■□□□□ 0.16
VPS29-209ENST00000551655 RFC5P40937 340 aa16.02■□□□□ 0.16
VPS29-209ENST00000551655 CAPSQ13938 189 aa16.02■□□□□ 0.16
VPS29-209ENST00000551655 NAB2Q15742 525 aa16.02■□□□□ 0.16
VPS29-209ENST00000551655 PDZD4Q76G19 769 aaPredicted RBP16.02■□□□□ 0.16
VPS29-209ENST00000551655 HACE1Q8IYU2 909 aa16.02■□□□□ 0.16
VPS29-209ENST00000551655 ETNPPLQ8TBG4 499 aa16.02■□□□□ 0.16
VPS29-209ENST00000551655 ASAP3Q8TDY4 903 aa16.02■□□□□ 0.16
VPS29-209ENST00000551655 DEPDC1BQ8WUY9 529 aa16.02■□□□□ 0.16
VPS29-209ENST00000551655 DDX27Q96GQ7 796 aaKnown RBP16.02■□□□□ 0.16
VPS29-209ENST00000551655 LSG1Q9H089 658 aaKnown RBP16.02■□□□□ 0.16
VPS29-209ENST00000551655 XPNPEP1Q9NQW7 623 aa16.02■□□□□ 0.16
VPS29-209ENST00000551655 NAP1L2Q9ULW6 460 aaPredicted RBP16.02■□□□□ 0.16
VPS29-209ENST00000551655 ARHGEF37A1IGU5 675 aa16.01■□□□□ 0.15
VPS29-209ENST00000551655 SPECC1L-ADORA2AF8WAN1 911 aa16.01■□□□□ 0.15
VPS29-209ENST00000551655 PRRG1O14668 218 aa16.01■□□□□ 0.15
VPS29-209ENST00000551655 HOXA6P31267 233 aa16.01■□□□□ 0.15
VPS29-209ENST00000551655 CTHP32929 405 aa16.01■□□□□ 0.15
VPS29-209ENST00000551655 QARSP47897 775 aaKnown RBP16.01■□□□□ 0.15
VPS29-209ENST00000551655 ARPP19P56211 112 aa16.01■□□□□ 0.15
VPS29-209ENST00000551655 ROR1Q01973 937 aa16.01■□□□□ 0.15
VPS29-209ENST00000551655 Q4G0T1 1027 aa16.01■□□□□ 0.15
VPS29-209ENST00000551655 PDXDC1Q6P996 788 aa16.01■□□□□ 0.15
VPS29-209ENST00000551655 SLC27A1Q6PCB7 646 aa16.01■□□□□ 0.15
VPS29-209ENST00000551655 CD300LGQ6UXG3 332 aa16.01■□□□□ 0.15
VPS29-209ENST00000551655 MFSD6LQ8IWD5 586 aa16.01■□□□□ 0.15
VPS29-209ENST00000551655 TBCKQ8TEA7 893 aa16.01■□□□□ 0.15
VPS29-209ENST00000551655 ZFYVE19Q96K21 471 aa16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms