RNA–Protein interactions for RNA: ENST00000550841.1

NEK3-202, Transcript of NIMA related kinase 3, humanhuman

TSL 4

Gene NEK3, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-202ENST00000550841 ERCC5P28715 1186 aaPredicted RBP23.27■■□□□ 1.32
NEK3-202ENST00000550841 PSMC2P35998 433 aaKnown RBP23.27■■□□□ 1.32
NEK3-202ENST00000550841 ERVK-21P61565 698 aa23.27■■□□□ 1.32
NEK3-202ENST00000550841 STX1AQ16623 288 aa23.27■■□□□ 1.32
NEK3-202ENST00000550841 USP37Q86T82 979 aa23.27■■□□□ 1.32
NEK3-202ENST00000550841 ZNF280BQ86YH2 543 aa23.27■■□□□ 1.32
NEK3-202ENST00000550841 ZSWIM2Q8NEG5 633 aa23.27■■□□□ 1.32
NEK3-202ENST00000550841 DDX27Q96GQ7 796 aaKnown RBP23.27■■□□□ 1.32
NEK3-202ENST00000550841 MFSD14AQ96MC6 490 aa23.27■■□□□ 1.32
NEK3-202ENST00000550841 UROC1Q96N76 676 aa23.27■■□□□ 1.32
NEK3-202ENST00000550841 ZNF558Q96NG5 402 aa23.27■■□□□ 1.32
NEK3-202ENST00000550841 MKNK1Q9BUB5 465 aa23.27■■□□□ 1.32
NEK3-202ENST00000550841 UBQLN1Q9UMX0 589 aaKnown RBP23.27■■□□□ 1.32
NEK3-202ENST00000550841 FAN1Q9Y2M0 1017 aa23.27■■□□□ 1.32
NEK3-202ENST00000550841 C2CD2Q9Y426 696 aa23.27■■□□□ 1.32
NEK3-202ENST00000550841 TDRD15B5MCY1 1934 aaKnown RBP23.26■■□□□ 1.31
NEK3-202ENST00000550841 TULP1O00294 542 aaPredicted RBP23.26■■□□□ 1.31
NEK3-202ENST00000550841 ZC3H11AO75152 810 aaKnown RBP eCLIP23.26■■□□□ 1.31
NEK3-202ENST00000550841 DDHD2O94830 711 aa23.26■■□□□ 1.31
NEK3-202ENST00000550841 CYP3A5P20815 502 aa23.26■■□□□ 1.31
NEK3-202ENST00000550841 PMS1P54277 932 aaKnown RBP23.26■■□□□ 1.31
NEK3-202ENST00000550841 CYP24A1Q07973 514 aa23.26■■□□□ 1.31
NEK3-202ENST00000550841 DSC1Q08554 894 aa23.26■■□□□ 1.31
NEK3-202ENST00000550841 TMEM132DQ14C87 1099 aa23.26■■□□□ 1.31
NEK3-202ENST00000550841 DPCR1Q3MIW9 517 aa23.26■■□□□ 1.31
NEK3-202ENST00000550841 GLRA4Q5JXX5 417 aa23.26■■□□□ 1.31
NEK3-202ENST00000550841 TTI2Q6NXR4 508 aa23.26■■□□□ 1.31
NEK3-202ENST00000550841 KCNT2Q6UVM3 1135 aa23.26■■□□□ 1.31
NEK3-202ENST00000550841 COLGALT2Q8IYK4 626 aa23.26■■□□□ 1.31
NEK3-202ENST00000550841 COLGALT1Q8NBJ5 622 aa23.26■■□□□ 1.31
NEK3-202ENST00000550841 BEST2Q8NFU1 509 aa23.26■■□□□ 1.31
NEK3-202ENST00000550841 CEP63Q96MT8 703 aa23.26■■□□□ 1.31
NEK3-202ENST00000550841 ZMAT2Q96NC0 199 aaKnown RBP23.26■■□□□ 1.31
NEK3-202ENST00000550841 FNBP1Q96RU3 617 aa23.26■■□□□ 1.31
NEK3-202ENST00000550841 TRIP11Q15643 1979 aa23.26■■□□□ 1.31
NEK3-202ENST00000550841 TRIM49BA6NDI0 452 aa23.25■■□□□ 1.31
NEK3-202ENST00000550841 MEFVO15553 781 aaPredicted RBP23.25■■□□□ 1.31
NEK3-202ENST00000550841 GALTP07902 379 aa23.25■■□□□ 1.31
NEK3-202ENST00000550841 CCDC192P0DO97 292 aa23.25■■□□□ 1.31
NEK3-202ENST00000550841 EPB41P11171 864 aaKnown RBP23.25■■□□□ 1.31
NEK3-202ENST00000550841 RPL9P32969 192 aaKnown RBP23.25■■□□□ 1.31
NEK3-202ENST00000550841 PPM1AP35813 382 aa23.25■■□□□ 1.31
NEK3-202ENST00000550841 BCAR1P56945 870 aa23.25■■□□□ 1.31
NEK3-202ENST00000550841 STX17P56962 302 aa23.25■■□□□ 1.31
NEK3-202ENST00000550841 PSMD6Q15008 389 aa23.25■■□□□ 1.31
NEK3-202ENST00000550841 ZBTB6Q15916 424 aa23.25■■□□□ 1.31
NEK3-202ENST00000550841 JADE1Q6IE81 842 aa23.25■■□□□ 1.31
NEK3-202ENST00000550841 FILIP1Q7Z7B0 1213 aa23.25■■□□□ 1.31
NEK3-202ENST00000550841 ZC3H3Q8IXZ2 948 aaKnown RBP23.25■■□□□ 1.31
NEK3-202ENST00000550841 COLEC11Q9BWP8 271 aa23.25■■□□□ 1.31
NEK3-202ENST00000550841 CXCL16Q9H2A7 254 aa23.25■■□□□ 1.31
NEK3-202ENST00000550841 ZNF576Q9H609 170 aa23.25■■□□□ 1.31
NEK3-202ENST00000550841 PLAGL2Q9UPG8 496 aa23.25■■□□□ 1.31
NEK3-202ENST00000550841 C5orf67F2Z3F1 127 aa23.24■■□□□ 1.31
NEK3-202ENST00000550841 KRT13P13646 458 aa23.24■■□□□ 1.31
NEK3-202ENST00000550841 CTNNB1P35222 781 aa23.24■■□□□ 1.31
NEK3-202ENST00000550841 OR1G1P47890 313 aa23.24■■□□□ 1.31
NEK3-202ENST00000550841 ENPEPQ07075 957 aa23.24■■□□□ 1.31
NEK3-202ENST00000550841 EPC2Q52LR7 807 aa23.24■■□□□ 1.31
NEK3-202ENST00000550841 INTS8Q75QN2 995 aaKnown RBP23.24■■□□□ 1.31
NEK3-202ENST00000550841 FAM186BQ8IYM0 893 aa23.24■■□□□ 1.31
NEK3-202ENST00000550841 CSGALNACT2Q8N6G5 542 aa23.24■■□□□ 1.31
NEK3-202ENST00000550841 PDE11AQ9HCR9 933 aa23.24■■□□□ 1.31
NEK3-202ENST00000550841 SPG21Q9NZD8 308 aa23.24■■□□□ 1.31
NEK3-202ENST00000550841 SLC16A3O15427 465 aaKnown RBP23.23■■□□□ 1.31
NEK3-202ENST00000550841 AKAP3O75969 853 aa23.23■■□□□ 1.31
NEK3-202ENST00000550841 GNA14O95837 355 aa23.23■■□□□ 1.31
NEK3-202ENST00000550841 CASP4P49662 377 aa23.23■■□□□ 1.31
NEK3-202ENST00000550841 KRT17Q04695 432 aa23.23■■□□□ 1.31
NEK3-202ENST00000550841 TYRO3Q06418 890 aa23.23■■□□□ 1.31
NEK3-202ENST00000550841 SPAG1Q07617 926 aa23.23■■□□□ 1.31
NEK3-202ENST00000550841 NAB2Q15742 525 aa23.23■■□□□ 1.31
NEK3-202ENST00000550841 TPD52L1Q16890 204 aaPredicted RBP23.23■■□□□ 1.31
NEK3-202ENST00000550841 SPATA1Q5VX52 437 aa23.23■■□□□ 1.31
NEK3-202ENST00000550841 FBXO22Q8NEZ5 403 aa23.23■■□□□ 1.31
NEK3-202ENST00000550841 TMC2Q8TDI7 906 aa23.23■■□□□ 1.31
NEK3-202ENST00000550841 DUSP9Q99956 384 aaKnown RBP23.23■■□□□ 1.31
NEK3-202ENST00000550841 C17orf80Q9BSJ5 609 aa23.23■■□□□ 1.31
NEK3-202ENST00000550841 C11orf84Q9BUA3 381 aaPredicted RBP23.23■■□□□ 1.31
NEK3-202ENST00000550841 NAT10Q9H0A0 1025 aaKnown RBP23.23■■□□□ 1.31
NEK3-202ENST00000550841 METTL14Q9HCE5 456 aaKnown RBP23.23■■□□□ 1.31
NEK3-202ENST00000550841 DNAJB4Q9UDY4 337 aa23.23■■□□□ 1.31
NEK3-202ENST00000550841 STK39Q9UEW8 545 aa23.23■■□□□ 1.31
NEK3-202ENST00000550841 NRP1O14786 923 aa23.22■■□□□ 1.31
NEK3-202ENST00000550841 ARHGEF15O94989 841 aa23.22■■□□□ 1.31
NEK3-202ENST00000550841 LINC00271P0C7V0 271 aa23.22■■□□□ 1.31
NEK3-202ENST00000550841 TNNI1P19237 187 aa23.22■■□□□ 1.31
NEK3-202ENST00000550841 SLC11A1P49279 550 aa23.22■■□□□ 1.31
NEK3-202ENST00000550841 AP3M2P53677 418 aa23.22■■□□□ 1.31
NEK3-202ENST00000550841 DUOXA2Q1HG44 320 aa23.22■■□□□ 1.31
NEK3-202ENST00000550841 DCLRE1AQ6PJP8 1040 aa23.22■■□□□ 1.31
NEK3-202ENST00000550841 WDR49Q8IV35 697 aa23.22■■□□□ 1.31
NEK3-202ENST00000550841 CCDC127Q96BQ5 260 aa23.22■■□□□ 1.31
NEK3-202ENST00000550841 ANKRD36BP1Q96IX9 119 aa23.22■■□□□ 1.31
NEK3-202ENST00000550841 SRRTQ9BXP5 876 aaKnown RBP23.22■■□□□ 1.31
NEK3-202ENST00000550841 HCSTQ9UBK5 93 aa23.22■■□□□ 1.31
NEK3-202ENST00000550841 PUF60Q9UHX1 559 aaKnown RBP23.22■■□□□ 1.31
NEK3-202ENST00000550841 RALGAPA2Q2PPJ7 1873 aa23.22■■□□□ 1.31
NEK3-202ENST00000550841 TNNC2P02585 160 aa23.21■■□□□ 1.31
NEK3-202ENST00000550841 NFICP08651 508 aa23.21■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms