RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 CYP4A11Q02928 519 aa14.13□□□□□ -0.15
SCAF11-208ENST00000546534 SSRP1Q08945 709 aaKnown RBP14.13□□□□□ -0.15
SCAF11-208ENST00000546534 RAB33AQ14088 237 aa14.13□□□□□ -0.15
SCAF11-208ENST00000546534 SLC5A9Q2M3M2 681 aa14.13□□□□□ -0.15
SCAF11-208ENST00000546534 LAIR1Q6GTX8 287 aa14.13□□□□□ -0.15
SCAF11-208ENST00000546534 NCAPH2Q6IBW4 605 aa14.13□□□□□ -0.15
SCAF11-208ENST00000546534 TANGO2Q6ICL3 276 aa14.13□□□□□ -0.15
SCAF11-208ENST00000546534 KRT25Q7Z3Z0 450 aa14.13□□□□□ -0.15
SCAF11-208ENST00000546534 TRIM22Q8IYM9 498 aa14.13□□□□□ -0.15
SCAF11-208ENST00000546534 ZSWIM4Q9H7M6 989 aa14.13□□□□□ -0.15
SCAF11-208ENST00000546534 NDRG2Q9UN36 371 aaKnown RBP14.13□□□□□ -0.15
SCAF11-208ENST00000546534 SNX14Q9Y5W7 946 aa14.13□□□□□ -0.15
SCAF11-208ENST00000546534 PTGESO14684 152 aa14.12□□□□□ -0.15
SCAF11-208ENST00000546534 SLITRK3O94933 977 aa14.12□□□□□ -0.15
SCAF11-208ENST00000546534 RETP07949 1114 aa14.12□□□□□ -0.15
SCAF11-208ENST00000546534 RHOP08100 348 aa14.12□□□□□ -0.15
SCAF11-208ENST00000546534 GLRA2P23416 452 aa14.12□□□□□ -0.15
SCAF11-208ENST00000546534 ARL2P36404 184 aa14.12□□□□□ -0.15
SCAF11-208ENST00000546534 NRLP54845 237 aa14.12□□□□□ -0.15
SCAF11-208ENST00000546534 EVCP57679 992 aa14.12□□□□□ -0.15
SCAF11-208ENST00000546534 SPIRE1Q08AE8 756 aa14.12□□□□□ -0.15
SCAF11-208ENST00000546534 ELAVL2Q12926 359 aaKnown RBP14.12□□□□□ -0.15
SCAF11-208ENST00000546534 NAB2Q15742 525 aa14.12□□□□□ -0.15
SCAF11-208ENST00000546534 BMP2KLQ5H9B9 411 aa14.12□□□□□ -0.15
SCAF11-208ENST00000546534 PPP4R3AQ6IN85 833 aa14.12□□□□□ -0.15
SCAF11-208ENST00000546534 GALNT17Q6IS24 598 aa14.12□□□□□ -0.15
SCAF11-208ENST00000546534 PDXDC1Q6P996 788 aa14.12□□□□□ -0.15
SCAF11-208ENST00000546534 TPH2Q8IWU9 490 aa14.12□□□□□ -0.15
SCAF11-208ENST00000546534 CELF5Q8N6W0 485 aaKnown RBP14.12□□□□□ -0.15
SCAF11-208ENST00000546534 DNASE1L2Q92874 299 aa14.12□□□□□ -0.15
SCAF11-208ENST00000546534 AIFM3Q96NN9 605 aa14.12□□□□□ -0.15
SCAF11-208ENST00000546534 NFKBIZQ9BYH8 718 aa14.12□□□□□ -0.15
SCAF11-208ENST00000546534 CXCL16Q9H2A7 254 aa14.12□□□□□ -0.15
SCAF11-208ENST00000546534 CHRDQ9H2X0 955 aa14.12□□□□□ -0.15
SCAF11-208ENST00000546534 GDE1Q9NZC3 331 aa14.12□□□□□ -0.15
SCAF11-208ENST00000546534 USP24Q9UPU5 2620 aa14.11□□□□□ -0.15
SCAF11-208ENST00000546534 TBX3O15119 743 aa14.11□□□□□ -0.15
SCAF11-208ENST00000546534 MARCH6O60337 910 aa14.11□□□□□ -0.15
SCAF11-208ENST00000546534 DEXIO95424 95 aa14.11□□□□□ -0.15
SCAF11-208ENST00000546534 THP07101 528 aa14.11□□□□□ -0.15
SCAF11-208ENST00000546534 GCFC2P16383 781 aaKnown RBP14.11□□□□□ -0.15
SCAF11-208ENST00000546534 CEBPBP17676 345 aa14.11□□□□□ -0.15
SCAF11-208ENST00000546534 FGFR3P22607 806 aa14.11□□□□□ -0.15
SCAF11-208ENST00000546534 IGFBP6P24592 240 aaPredicted RBP14.11□□□□□ -0.15
SCAF11-208ENST00000546534 IRX6P78412 446 aaPredicted RBP14.11□□□□□ -0.15
SCAF11-208ENST00000546534 GRM2Q14416 872 aa14.11□□□□□ -0.15
SCAF11-208ENST00000546534 NBR1Q14596 966 aa14.11□□□□□ -0.15
SCAF11-208ENST00000546534 PDZRN4Q6ZMN7 1036 aaPredicted RBP14.11□□□□□ -0.15
SCAF11-208ENST00000546534 PRR23BQ6ZRT6 265 aa14.11□□□□□ -0.15
SCAF11-208ENST00000546534 NEK8Q86SG6 692 aa14.11□□□□□ -0.15
SCAF11-208ENST00000546534 SKAP1Q86WV1 359 aa14.11□□□□□ -0.15
SCAF11-208ENST00000546534 ELSPBP1Q96BH3 223 aa14.11□□□□□ -0.15
SCAF11-208ENST00000546534 YTHDC1Q96MU7 727 aaKnown RBP14.11□□□□□ -0.15
SCAF11-208ENST00000546534 NOTCH4Q99466 2003 aa14.11□□□□□ -0.15
SCAF11-208ENST00000546534 MTRRQ9UBK8 725 aa14.11□□□□□ -0.15
SCAF11-208ENST00000546534 KCNJ14Q9UNX9 436 aa14.11□□□□□ -0.15
SCAF11-208ENST00000546534 CACNA1GO43497 2377 aa14.11□□□□□ -0.15
SCAF11-208ENST00000546534 MAN2B1O00754 1011 aa14.1□□□□□ -0.15
SCAF11-208ENST00000546534 NRG2O14511 850 aaPredicted RBP14.1□□□□□ -0.15
SCAF11-208ENST00000546534 GDF9O60383 454 aa14.1□□□□□ -0.15
SCAF11-208ENST00000546534 CCNT1O60563 726 aaKnown RBP14.1□□□□□ -0.15
SCAF11-208ENST00000546534 LRP3O75074 770 aa14.1□□□□□ -0.15
SCAF11-208ENST00000546534 DGAT1O75907 488 aa14.1□□□□□ -0.15
SCAF11-208ENST00000546534 FCARP24071 287 aa14.1□□□□□ -0.15
SCAF11-208ENST00000546534 LCE2DQ5TA82 110 aaPredicted RBP14.1□□□□□ -0.15
SCAF11-208ENST00000546534 RTL10Q7L3V2 364 aa14.1□□□□□ -0.15
SCAF11-208ENST00000546534 POLR3FQ9H1D9 316 aaPredicted RBP14.1□□□□□ -0.15
SCAF11-208ENST00000546534 BRD9Q9H8M2 597 aa14.1□□□□□ -0.15
SCAF11-208ENST00000546534 LMAN1LQ9HAT1 526 aa14.1□□□□□ -0.15
SCAF11-208ENST00000546534 AVENQ9NQS1 362 aaPredicted RBP14.1□□□□□ -0.15
SCAF11-208ENST00000546534 SEMA4GQ9NTN9 838 aa14.1□□□□□ -0.15
SCAF11-208ENST00000546534 SNTG2Q9NY99 539 aa14.1□□□□□ -0.15
SCAF11-208ENST00000546534 CDY1Q9Y6F8 540 aa14.1□□□□□ -0.15
SCAF11-208ENST00000546534 ARID2Q68CP9 1835 aa14.09□□□□□ -0.15
SCAF11-208ENST00000546534 CCDC194A0A1B0GVG4 234 aa14.09□□□□□ -0.15
SCAF11-208ENST00000546534 LYPLA2O95372 231 aa14.09□□□□□ -0.15
SCAF11-208ENST00000546534 HSPA4P34932 840 aa14.09□□□□□ -0.15
SCAF11-208ENST00000546534 PPP2R5DQ14738 602 aa14.09□□□□□ -0.15
SCAF11-208ENST00000546534 CSRP2Q16527 193 aa14.09□□□□□ -0.15
SCAF11-208ENST00000546534 FAM78AQ5JUQ0 283 aa14.09□□□□□ -0.15
SCAF11-208ENST00000546534 PRR23CQ6ZRP0 262 aa14.09□□□□□ -0.15
SCAF11-208ENST00000546534 FAM177A1Q8N128 213 aaPredicted RBP14.09□□□□□ -0.15
SCAF11-208ENST00000546534 HSD17B14Q9BPX1 270 aa14.09□□□□□ -0.15
SCAF11-208ENST00000546534 EIF2AK1Q9BQI3 630 aaKnown RBP14.09□□□□□ -0.15
SCAF11-208ENST00000546534 IER2Q9BTL4 223 aa14.09□□□□□ -0.15
SCAF11-208ENST00000546534 TRMT61BQ9BVS5 477 aaKnown RBP14.09□□□□□ -0.15
SCAF11-208ENST00000546534 ANKEF1Q9NU02 776 aa14.09□□□□□ -0.15
SCAF11-208ENST00000546534 CHD6Q8TD26 2715 aa14.09□□□□□ -0.15
SCAF11-208ENST00000546534 A0A087WWV3 80 aa14.08□□□□□ -0.16
SCAF11-208ENST00000546534 LRRIQ4A6NIV6 560 aa14.08□□□□□ -0.16
SCAF11-208ENST00000546534 CPLX1O14810 134 aa14.08□□□□□ -0.16
SCAF11-208ENST00000546534 HRO43593 1189 aa14.08□□□□□ -0.16
SCAF11-208ENST00000546534 CDC45O75419 566 aa14.08□□□□□ -0.16
SCAF11-208ENST00000546534 RECQL4O94761 1208 aa14.08□□□□□ -0.16
SCAF11-208ENST00000546534 PTPN2P17706 415 aa14.08□□□□□ -0.16
SCAF11-208ENST00000546534 TKTP29401 623 aaKnown RBP14.08□□□□□ -0.16
SCAF11-208ENST00000546534 CCR3P51677 355 aa14.08□□□□□ -0.16
SCAF11-208ENST00000546534 SATB1Q01826 763 aa14.08□□□□□ -0.16
SCAF11-208ENST00000546534 SRSF5Q13243 272 aaKnown RBP14.08□□□□□ -0.16
SCAF11-208ENST00000546534 TOB2Q14106 344 aaPredicted RBP14.08□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms