RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 PRKG1Q13976 671 aa16.06■□□□□ 0.16
USP28-214ENST00000545540 PGM5Q15124 567 aa16.06■□□□□ 0.16
USP28-214ENST00000545540 CNGA2Q16280 664 aa16.06■□□□□ 0.16
USP28-214ENST00000545540 NFIL3Q16649 462 aa16.06■□□□□ 0.16
USP28-214ENST00000545540 GSTA5Q7RTV2 222 aa16.06■□□□□ 0.16
USP28-214ENST00000545540 YTHDF3Q7Z739 585 aaKnown RBP16.06■□□□□ 0.16
USP28-214ENST00000545540 SPATS2Q86XZ4 545 aaKnown RBP16.06■□□□□ 0.16
USP28-214ENST00000545540 DDX1Q92499 740 aaKnown RBP16.06■□□□□ 0.16
USP28-214ENST00000545540 PRCCQ92733 491 aaPredicted RBP16.06■□□□□ 0.16
USP28-214ENST00000545540 ART4Q93070 314 aa16.06■□□□□ 0.16
USP28-214ENST00000545540 KIF9Q9HAQ2 790 aa16.06■□□□□ 0.16
USP28-214ENST00000545540 SAMD15Q9P1V8 674 aa16.06■□□□□ 0.16
USP28-214ENST00000545540 SEPT9Q9UHD8 586 aaPredicted RBP16.06■□□□□ 0.16
USP28-214ENST00000545540 PTPRJQ12913 1337 aa16.06■□□□□ 0.16
USP28-214ENST00000545540 ATRNL1Q5VV63 1379 aa16.06■□□□□ 0.16
USP28-214ENST00000545540 PODXLO00592 558 aa16.06■□□□□ 0.16
USP28-214ENST00000545540 CDC25CP30307 473 aa16.06■□□□□ 0.16
USP28-214ENST00000545540 RDXP35241 583 aaKnown RBP16.06■□□□□ 0.16
USP28-214ENST00000545540 C6orf118Q5T5N4 469 aa16.06■□□□□ 0.16
USP28-214ENST00000545540 PSPC1Q8WXF1 523 aaKnown RBP16.06■□□□□ 0.16
USP28-214ENST00000545540 SPOCK2Q92563 424 aa16.06■□□□□ 0.16
USP28-214ENST00000545540 MRIQ9BWK5 157 aa16.06■□□□□ 0.16
USP28-214ENST00000545540 SAE1Q9UBE0 346 aaPredicted RBP16.06■□□□□ 0.16
USP28-214ENST00000545540 FEM1BQ9UK73 627 aa16.06■□□□□ 0.16
USP28-214ENST00000545540 NRXN2Q9P2S2 1712 aa16.05■□□□□ 0.16
USP28-214ENST00000545540 UBOX5O94941 541 aa16.05■□□□□ 0.16
USP28-214ENST00000545540 TMEM270Q6UE05 265 aa16.05■□□□□ 0.16
USP28-214ENST00000545540 DIS3Q9Y2L1 958 aaKnown RBP16.05■□□□□ 0.16
USP28-214ENST00000545540 MROH7Q68CQ1 1323 aa16.05■□□□□ 0.16
USP28-214ENST00000545540 RARGP13631 454 aa16.05■□□□□ 0.16
USP28-214ENST00000545540 ATF7P17544 494 aaPredicted RBP16.05■□□□□ 0.16
USP28-214ENST00000545540 ATG4CQ96DT6 458 aa16.05■□□□□ 0.16
USP28-214ENST00000545540 PGM2Q96G03 612 aa16.05■□□□□ 0.16
USP28-214ENST00000545540 LBHD1Q9BQE6 289 aaPredicted RBP16.05■□□□□ 0.16
USP28-214ENST00000545540 DSG3P32926 999 aa16.04■□□□□ 0.16
USP28-214ENST00000545540 PTGER2P43116 358 aa16.04■□□□□ 0.16
USP28-214ENST00000545540 HSD17B4P51659 736 aa16.04■□□□□ 0.16
USP28-214ENST00000545540 NLRP11P59045 1033 aaKnown RBP16.04■□□□□ 0.16
USP28-214ENST00000545540 ACAD10Q6JQN1 1059 aa16.04■□□□□ 0.16
USP28-214ENST00000545540 RPS6KC1Q96S38 1066 aa16.04■□□□□ 0.16
USP28-214ENST00000545540 CNOT10Q9H9A5 744 aaKnown RBP16.04■□□□□ 0.16
USP28-214ENST00000545540 GTF3C4Q9UKN8 822 aa16.04■□□□□ 0.16
USP28-214ENST00000545540 CYP1A2P05177 515 aa16.04■□□□□ 0.16
USP28-214ENST00000545540 BRAFP15056 766 aa16.04■□□□□ 0.16
USP28-214ENST00000545540 RPL7AP62424 266 aaKnown RBP16.04■□□□□ 0.16
USP28-214ENST00000545540 ACCSLQ4AC99 568 aa16.04■□□□□ 0.16
USP28-214ENST00000545540 C7orf43Q8WVR3 580 aa16.04■□□□□ 0.16
USP28-214ENST00000545540 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP16.04■□□□□ 0.16
USP28-214ENST00000545540 KCND2Q9NZV8 630 aa16.04■□□□□ 0.16
USP28-214ENST00000545540 ANAPC5Q9UJX4 755 aa16.04■□□□□ 0.16
USP28-214ENST00000545540 POC1B-GALNT4F8VUJ3 575 aa16.04■□□□□ 0.16
USP28-214ENST00000545540 FASTKD3Q14CZ7 662 aaKnown RBP16.04■□□□□ 0.16
USP28-214ENST00000545540 PAGR1Q9BTK6 254 aa16.04■□□□□ 0.16
USP28-214ENST00000545540 FHDC1Q9C0D6 1143 aaPredicted RBP16.04■□□□□ 0.16
USP28-214ENST00000545540 TAOK3Q9H2K8 898 aa16.04■□□□□ 0.16
USP28-214ENST00000545540 UBIAD1Q9Y5Z9 338 aa16.04■□□□□ 0.16
USP28-214ENST00000545540 C5orf60A6NFR6 353 aa16.03■□□□□ 0.16
USP28-214ENST00000545540 WNT10BO00744 389 aa16.03■□□□□ 0.16
USP28-214ENST00000545540 PAEPP09466 180 aa16.03■□□□□ 0.16
USP28-214ENST00000545540 PSMC5P62195 406 aa16.03■□□□□ 0.16
USP28-214ENST00000545540 FSTL1Q12841 308 aa16.03■□□□□ 0.16
USP28-214ENST00000545540 SNCBQ16143 134 aa16.03■□□□□ 0.16
USP28-214ENST00000545540 CDR2LQ86X02 465 aaPredicted RBP16.03■□□□□ 0.16
USP28-214ENST00000545540 ANKS4BQ8N8V4 417 aa16.03■□□□□ 0.16
USP28-214ENST00000545540 ZNF526Q8TF50 670 aaPredicted RBP16.03■□□□□ 0.16
USP28-214ENST00000545540 PDCD2LQ9BRP1 358 aa16.03■□□□□ 0.16
USP28-214ENST00000545540 C12orf65Q9H3J6 166 aaKnown RBP16.03■□□□□ 0.16
USP28-214ENST00000545540 UBE4BO95155 1302 aa16.03■□□□□ 0.16
USP28-214ENST00000545540 IFNB1P01574 187 aa16.03■□□□□ 0.16
USP28-214ENST00000545540 GZMAP12544 262 aa16.03■□□□□ 0.16
USP28-214ENST00000545540 MAP2K2P36507 400 aa16.03■□□□□ 0.16
USP28-214ENST00000545540 CYP24A1Q07973 514 aa16.03■□□□□ 0.16
USP28-214ENST00000545540 TMED2Q15363 201 aa16.03■□□□□ 0.16
USP28-214ENST00000545540 TXNRD3NBQ6F5E7 133 aa16.03■□□□□ 0.16
USP28-214ENST00000545540 VSTM1Q6UX27 236 aa16.03■□□□□ 0.16
USP28-214ENST00000545540 TMEM8AQ9HCN3 771 aa16.03■□□□□ 0.16
USP28-214ENST00000545540 PPP1R1BQ9UD71 204 aaPredicted RBP16.03■□□□□ 0.16
USP28-214ENST00000545540 THSD7AQ9UPZ6 1657 aa16.03■□□□□ 0.16
USP28-214ENST00000545540 DYNLT1P63172 113 aa16.03■□□□□ 0.16
USP28-214ENST00000545540 CLEC16AQ2KHT3 1053 aa16.03■□□□□ 0.16
USP28-214ENST00000545540 TRPM8Q7Z2W7 1104 aa16.03■□□□□ 0.16
USP28-214ENST00000545540 FAM160B2Q86V87 743 aa16.03■□□□□ 0.16
USP28-214ENST00000545540 MCOLN2Q8IZK6 566 aa16.03■□□□□ 0.16
USP28-214ENST00000545540 TTLL13PA6NNM8 815 aa16.02■□□□□ 0.16
USP28-214ENST00000545540 AGTP01019 485 aa16.02■□□□□ 0.16
USP28-214ENST00000545540 NSFP46459 744 aaKnown RBP16.02■□□□□ 0.16
USP28-214ENST00000545540 NLRX1Q86UT6 975 aa16.02■□□□□ 0.16
USP28-214ENST00000545540 SGSM3Q96HU1 749 aa16.02■□□□□ 0.16
USP28-214ENST00000545540 FNBP1Q96RU3 617 aa16.02■□□□□ 0.16
USP28-214ENST00000545540 PCDHB4Q9Y5E5 795 aa16.02■□□□□ 0.16
USP28-214ENST00000545540 SPATA31A6Q5VVP1 1343 aa16.02■□□□□ 0.15
USP28-214ENST00000545540 COL11A2P13942 1736 aaPredicted RBP16.02■□□□□ 0.15
USP28-214ENST00000545540 ASNSP08243 561 aa16.02■□□□□ 0.15
USP28-214ENST00000545540 ATF2P15336 505 aa16.02■□□□□ 0.15
USP28-214ENST00000545540 DRG2P55039 364 aaKnown RBP16.02■□□□□ 0.15
USP28-214ENST00000545540 PLCB3Q01970 1234 aa16.02■□□□□ 0.15
USP28-214ENST00000545540 ORC1Q13415 861 aa16.02■□□□□ 0.15
USP28-214ENST00000545540 SPDYE2Q495Y8 402 aa16.02■□□□□ 0.15
USP28-214ENST00000545540 TAS1R3Q7RTX0 852 aa16.02■□□□□ 0.15
USP28-214ENST00000545540 CCDC60Q8IWA6 550 aaPredicted RBP16.02■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms