RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	TNNC2	P02585	160 aa		11	□□□□□ -0.65
CPSF7-221	ENST00000543545	TPM2	P07951	284 aa		11	□□□□□ -0.65
CPSF7-221	ENST00000543545	NFIC	P08651	508 aa		11	□□□□□ -0.65
CPSF7-221	ENST00000543545	GRIK3	Q13003	919 aa		11	□□□□□ -0.65
CPSF7-221	ENST00000543545	BIRC3	Q13489	604 aa		11	□□□□□ -0.65
CPSF7-221	ENST00000543545	DUOXA2	Q1HG44	320 aa		11	□□□□□ -0.65
CPSF7-221	ENST00000543545	XKR4	Q5GH76	650 aa		11	□□□□□ -0.65
CPSF7-221	ENST00000543545	FAM109B	Q6ICB4	259 aa	Predicted RBP	11	□□□□□ -0.65
CPSF7-221	ENST00000543545	LUZP1	Q86V48	1076 aa		11	□□□□□ -0.65
CPSF7-221	ENST00000543545	DHX40	Q8IX18	779 aa	Known RBP	11	□□□□□ -0.65
CPSF7-221	ENST00000543545	CMTR2	Q8IYT2	770 aa	Known RBP	11	□□□□□ -0.65
CPSF7-221	ENST00000543545	LRRC43	Q8N309	656 aa		11	□□□□□ -0.65
CPSF7-221	ENST00000543545	TMC2	Q8TDI7	906 aa		11	□□□□□ -0.65
CPSF7-221	ENST00000543545	RSPH1	Q8WYR4	309 aa		11	□□□□□ -0.65
CPSF7-221	ENST00000543545	C18orf25	Q96B23	403 aa	Predicted RBP	11	□□□□□ -0.65
CPSF7-221	ENST00000543545	ANKRD36BP1	Q96IX9	119 aa		11	□□□□□ -0.65
CPSF7-221	ENST00000543545	CNOT6L	Q96LI5	555 aa	Known RBP	11	□□□□□ -0.65
CPSF7-221	ENST00000543545	ZMAT2	Q96NC0	199 aa	Known RBP	11	□□□□□ -0.65
CPSF7-221	ENST00000543545	TSPAN18	Q96SJ8	248 aa		11	□□□□□ -0.65
CPSF7-221	ENST00000543545	CGRRF1	Q99675	332 aa		11	□□□□□ -0.65
CPSF7-221	ENST00000543545	TBC1D13	Q9NVG8	400 aa		11	□□□□□ -0.65
CPSF7-221	ENST00000543545	UBQLN1	Q9UMX0	589 aa	Known RBP	11	□□□□□ -0.65
CPSF7-221	ENST00000543545	PLAGL2	Q9UPG8	496 aa		11	□□□□□ -0.65
CPSF7-221	ENST00000543545	DERA	Q9Y315	318 aa		11	□□□□□ -0.65
CPSF7-221	ENST00000543545	UTP18	Q9Y5J1	556 aa	Known RBP eCLIP	11	□□□□□ -0.65
CPSF7-221	ENST00000543545	TET1	Q8NFU7	2136 aa		10.99	□□□□□ -0.65
CPSF7-221	ENST00000543545	CASTOR2	A6NHX0	329 aa		10.99	□□□□□ -0.65
CPSF7-221	ENST00000543545	LRRIQ3	A6PVS8	624 aa	Predicted RBP	10.99	□□□□□ -0.65
CPSF7-221	ENST00000543545	KCNJ18	B7U540	433 aa		10.99	□□□□□ -0.65
CPSF7-221	ENST00000543545	ZC3H11A	O75152	810 aa	Known RBP eCLIP	10.99	□□□□□ -0.65
CPSF7-221	ENST00000543545	ALDH2	P05091	517 aa		10.99	□□□□□ -0.65
CPSF7-221	ENST00000543545	KRT19	P08727	400 aa		10.99	□□□□□ -0.65
CPSF7-221	ENST00000543545	TRIM49	P0CI25	452 aa		10.99	□□□□□ -0.65
CPSF7-221	ENST00000543545	TRIM49C	P0CI26	452 aa		10.99	□□□□□ -0.65
CPSF7-221	ENST00000543545	PRKCSH	P14314	528 aa	Predicted RBP	10.99	□□□□□ -0.65
CPSF7-221	ENST00000543545	MYOG	P15173	224 aa		10.99	□□□□□ -0.65
CPSF7-221	ENST00000543545	OR1G1	P47890	313 aa		10.99	□□□□□ -0.65
CPSF7-221	ENST00000543545	GUCY2F	P51841	1108 aa		10.99	□□□□□ -0.65
CPSF7-221	ENST00000543545	WNT7B	P56706	349 aa		10.99	□□□□□ -0.65
CPSF7-221	ENST00000543545	DLG4	P78352	724 aa		10.99	□□□□□ -0.65
CPSF7-221	ENST00000543545	HTRA4	P83105	476 aa	Predicted RBP	10.99	□□□□□ -0.65
CPSF7-221	ENST00000543545	BFSP1	Q12934	665 aa		10.99	□□□□□ -0.65
CPSF7-221	ENST00000543545	TRPC3	Q13507	836 aa		10.99	□□□□□ -0.65
CPSF7-221	ENST00000543545	KCNJ12	Q14500	433 aa		10.99	□□□□□ -0.65
CPSF7-221	ENST00000543545	NCAPH	Q15003	741 aa		10.99	□□□□□ -0.65
CPSF7-221	ENST00000543545	IQCB1	Q15051	598 aa		10.99	□□□□□ -0.65
CPSF7-221	ENST00000543545	PRPF38B	Q5VTL8	546 aa	Known RBP	10.99	□□□□□ -0.65
CPSF7-221	ENST00000543545	NT5DC4	Q86YG4	428 aa		10.99	□□□□□ -0.65
CPSF7-221	ENST00000543545	ZNF280B	Q86YH2	543 aa		10.99	□□□□□ -0.65
CPSF7-221	ENST00000543545	WDR49	Q8IV35	697 aa		10.99	□□□□□ -0.65
CPSF7-221	ENST00000543545	GSTCD	Q8NEC7	633 aa		10.99	□□□□□ -0.65
CPSF7-221	ENST00000543545	PLEKHO2	Q8TD55	490 aa		10.99	□□□□□ -0.65
CPSF7-221	ENST00000543545	PARD3B	Q8TEW8	1205 aa		10.99	□□□□□ -0.65
CPSF7-221	ENST00000543545	ZNF689	Q96CS4	500 aa	Predicted RBP	10.99	□□□□□ -0.65
CPSF7-221	ENST00000543545	PPP1R10	Q96QC0	940 aa	Known RBP	10.99	□□□□□ -0.65
CPSF7-221	ENST00000543545	AAAS	Q9NRG9	546 aa		10.99	□□□□□ -0.65
CPSF7-221	ENST00000543545	INTS13	Q9NVM9	706 aa		10.99	□□□□□ -0.65
CPSF7-221	ENST00000543545	DPP3	Q9NY33	737 aa		10.99	□□□□□ -0.65
CPSF7-221	ENST00000543545	TUBGCP4	Q9UGJ1	667 aa		10.99	□□□□□ -0.65
CPSF7-221	ENST00000543545	COLQ	Q9Y215	455 aa	Predicted RBP	10.99	□□□□□ -0.65
CPSF7-221	ENST00000543545	C2CD2	Q9Y426	696 aa		10.99	□□□□□ -0.65
CPSF7-221	ENST00000543545	PCDHA11	Q9Y5I1	949 aa		10.99	□□□□□ -0.65
CPSF7-221	ENST00000543545	ALPK3	Q96L96	1907 aa		10.99	□□□□□ -0.65
CPSF7-221	ENST00000543545	SCN5A	Q14524	2016 aa		10.98	□□□□□ -0.65
CPSF7-221	ENST00000543545	LCHN	A4D1U4	455 aa		10.98	□□□□□ -0.65
CPSF7-221	ENST00000543545	INPPL1	O15357	1258 aa		10.98	□□□□□ -0.65
CPSF7-221	ENST00000543545	DDHD2	O94830	711 aa		10.98	□□□□□ -0.65
CPSF7-221	ENST00000543545	EEF1G	P26641	437 aa	Known RBP	10.98	□□□□□ -0.65
CPSF7-221	ENST00000543545	GCLM	P48507	274 aa		10.98	□□□□□ -0.65
CPSF7-221	ENST00000543545	ALDH7A1	P49419	539 aa	Known RBP	10.98	□□□□□ -0.65
CPSF7-221	ENST00000543545	AP3M2	P53677	418 aa		10.98	□□□□□ -0.65
CPSF7-221	ENST00000543545	TUSC3	Q13454	348 aa		10.98	□□□□□ -0.65
CPSF7-221	ENST00000543545	RAB30	Q15771	203 aa		10.98	□□□□□ -0.65
CPSF7-221	ENST00000543545	TCP11X2	Q5H9J9	407 aa		10.98	□□□□□ -0.65
CPSF7-221	ENST00000543545	IRF2BP1	Q8IU81	584 aa		10.98	□□□□□ -0.65
CPSF7-221	ENST00000543545	EFCAB13	Q8IY85	973 aa		10.98	□□□□□ -0.65
CPSF7-221	ENST00000543545	OR5B17	Q8NGF7	314 aa		10.98	□□□□□ -0.65
CPSF7-221	ENST00000543545	RABGGTA	Q92696	567 aa		10.98	□□□□□ -0.65
CPSF7-221	ENST00000543545	DDX27	Q96GQ7	796 aa	Known RBP	10.98	□□□□□ -0.65
CPSF7-221	ENST00000543545	BORCS6	Q96GS4	357 aa		10.98	□□□□□ -0.65
CPSF7-221	ENST00000543545	FAM84A	Q96KN4	292 aa		10.98	□□□□□ -0.65
CPSF7-221	ENST00000543545	TUBGCP2	Q9BSJ2	902 aa		10.98	□□□□□ -0.65
CPSF7-221	ENST00000543545	COLEC11	Q9BWP8	271 aa		10.98	□□□□□ -0.65
CPSF7-221	ENST00000543545	MTMR12	Q9C0I1	747 aa		10.98	□□□□□ -0.65
CPSF7-221	ENST00000543545	NRDE2	Q9H7Z3	1164 aa		10.98	□□□□□ -0.65
CPSF7-221	ENST00000543545	GOLGA2P5	Q9HBQ8	144 aa		10.98	□□□□□ -0.65
CPSF7-221	ENST00000543545	TAB2	Q9NYJ8	693 aa		10.98	□□□□□ -0.65
CPSF7-221	ENST00000543545	HCST	Q9UBK5	93 aa		10.98	□□□□□ -0.65
CPSF7-221	ENST00000543545	FAN1	Q9Y2M0	1017 aa		10.98	□□□□□ -0.65
CPSF7-221	ENST00000543545	PRG3	Q9Y2Y8	225 aa	Predicted RBP	10.98	□□□□□ -0.65
CPSF7-221	ENST00000543545	GTF3C5	Q9Y5Q8	519 aa	Predicted RBP	10.98	□□□□□ -0.65
CPSF7-221	ENST00000543545	MRPL42	Q9Y6G3	142 aa	Known RBP	10.98	□□□□□ -0.65
CPSF7-221	ENST00000543545	CEP290	O15078	2479 aa		10.97	□□□□□ -0.65
CPSF7-221	ENST00000543545	PODXL	O00592	558 aa		10.97	□□□□□ -0.65
CPSF7-221	ENST00000543545	B3GAT3	O94766	335 aa		10.97	□□□□□ -0.65
CPSF7-221	ENST00000543545	AFP	P02771	609 aa	Known RBP	10.97	□□□□□ -0.65
CPSF7-221	ENST00000543545	CA3	P07451	260 aa		10.97	□□□□□ -0.65
CPSF7-221	ENST00000543545	LAG3	P18627	525 aa		10.97	□□□□□ -0.65
CPSF7-221	ENST00000543545	CYP3A5	P20815	502 aa		10.97	□□□□□ -0.65
CPSF7-221	ENST00000543545	GTF2H1	P32780	548 aa		10.97	□□□□□ -0.65

Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms