RNA–Protein interactions for RNA: ENST00000542033.5

USP28-210, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 852 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-210ENST00000542033 RAVER1Q8IY67 606 aaKnown RBP4.15□□□□□ -1.75
USP28-210ENST00000542033 CHPFQ8IZ52 775 aa4.15□□□□□ -1.75
USP28-210ENST00000542033 OR10H5Q8NGA6 315 aa4.15□□□□□ -1.75
USP28-210ENST00000542033 OR52N2Q8NGI0 321 aa4.15□□□□□ -1.75
USP28-210ENST00000542033 SLC35B2Q8TB61 432 aa4.15□□□□□ -1.75
USP28-210ENST00000542033 C8orf48Q96LL4 319 aa4.15□□□□□ -1.75
USP28-210ENST00000542033 FAM193BQ96PV7 902 aaPredicted RBP4.15□□□□□ -1.75
USP28-210ENST00000542033 MAP3K14Q99558 947 aa4.15□□□□□ -1.75
USP28-210ENST00000542033 RTFDC1Q9BY42 306 aaPredicted RBP4.15□□□□□ -1.75
USP28-210ENST00000542033 CPEB1Q9BZB8 566 aaKnown RBP4.15□□□□□ -1.75
USP28-210ENST00000542033 TMPRSS5Q9H3S3 457 aa4.15□□□□□ -1.75
USP28-210ENST00000542033 MAN1C1Q9NR34 630 aa4.15□□□□□ -1.75
USP28-210ENST00000542033 ATRNL1Q5VV63 1379 aa4.14□□□□□ -1.75
USP28-210ENST00000542033 KLRG2A4D1S0 409 aaPredicted RBP4.14□□□□□ -1.75
USP28-210ENST00000542033 CYR61O00622 381 aa4.14□□□□□ -1.75
USP28-210ENST00000542033 PRC1O43663 620 aa4.14□□□□□ -1.75
USP28-210ENST00000542033 RFPL1O75677 317 aa4.14□□□□□ -1.75
USP28-210ENST00000542033 POMCP01189 267 aa4.14□□□□□ -1.75
USP28-210ENST00000542033 POU2F2P09086 479 aa4.14□□□□□ -1.75
USP28-210ENST00000542033 C1SP09871 688 aa4.14□□□□□ -1.75
USP28-210ENST00000542033 U2AF1L5P0DN76 240 aaPredicted RBP4.14□□□□□ -1.75
USP28-210ENST00000542033 HSPA6P17066 643 aa4.14□□□□□ -1.75
USP28-210ENST00000542033 PCSK1P29120 753 aa4.14□□□□□ -1.75
USP28-210ENST00000542033 MCM7P33993 719 aa4.14□□□□□ -1.75
USP28-210ENST00000542033 CTXN1P60606 82 aa4.14□□□□□ -1.75
USP28-210ENST00000542033 U2AF1Q01081 240 aaKnown RBP eCLIP4.14□□□□□ -1.75
USP28-210ENST00000542033 ABHD18Q0P651 414 aa4.14□□□□□ -1.75
USP28-210ENST00000542033 TARDBPQ13148 414 aaKnown RBP eCLIP4.14□□□□□ -1.757e-8■■□□□ 14.2
USP28-210ENST00000542033 MTM1Q13496 603 aa4.14□□□□□ -1.75
USP28-210ENST00000542033 RAB39AQ14964 217 aa4.14□□□□□ -1.75
USP28-210ENST00000542033 NFE2Q16621 373 aaPredicted RBP4.14□□□□□ -1.75
USP28-210ENST00000542033 PGS1Q32NB8 556 aa4.14□□□□□ -1.75
USP28-210ENST00000542033 CCDC157Q569K6 752 aa4.14□□□□□ -1.75
USP28-210ENST00000542033 OTUD7BQ6GQQ9 843 aa4.14□□□□□ -1.75
USP28-210ENST00000542033 ZNF529Q6P280 563 aa4.14□□□□□ -1.75
USP28-210ENST00000542033 DRICH1Q6PGQ1 229 aaPredicted RBP4.14□□□□□ -1.75
USP28-210ENST00000542033 GPRIN1Q7Z2K8 1008 aa4.14□□□□□ -1.75
USP28-210ENST00000542033 CATIPQ7Z7H3 387 aa4.14□□□□□ -1.75
USP28-210ENST00000542033 ZGPATQ8N5A5 531 aaKnown RBP4.14□□□□□ -1.75
USP28-210ENST00000542033 RNF169Q8NCN4 708 aa4.14□□□□□ -1.75
USP28-210ENST00000542033 CACTINQ8WUQ7 758 aaKnown RBP4.14□□□□□ -1.75
USP28-210ENST00000542033 PHACTR3Q96KR7 559 aa4.14□□□□□ -1.75
USP28-210ENST00000542033 LRGUKQ96M69 825 aa4.14□□□□□ -1.75
USP28-210ENST00000542033 KCNH6Q9H252 994 aa4.14□□□□□ -1.75
USP28-210ENST00000542033 SLC52A1Q9NWF4 448 aa4.14□□□□□ -1.75
USP28-210ENST00000542033 CEP72Q9P209 647 aa4.14□□□□□ -1.75
USP28-210ENST00000542033 EIF2B4Q9UI10 523 aaKnown RBP4.14□□□□□ -1.75
USP28-210ENST00000542033 PCDHB1Q9Y5F3 818 aa4.14□□□□□ -1.75
USP28-210ENST00000542033 XDHP47989 1333 aa4.14□□□□□ -1.75
USP28-210ENST00000542033 PLEKHD1A6NEE1 506 aa4.13□□□□□ -1.75
USP28-210ENST00000542033 NPIPB8E9PQR5 432 aa4.13□□□□□ -1.75
USP28-210ENST00000542033 KIF3BO15066 747 aa4.13□□□□□ -1.75
USP28-210ENST00000542033 KIAA0391O15091 583 aaKnown RBP4.13□□□□□ -1.75
USP28-210ENST00000542033 PLSCR1O15162 318 aa4.13□□□□□ -1.75
USP28-210ENST00000542033 TRIM24O15164 1050 aa4.13□□□□□ -1.75
USP28-210ENST00000542033 ZNF202O95125 648 aa4.13□□□□□ -1.75
USP28-210ENST00000542033 SCGB1D2O95969 90 aa4.13□□□□□ -1.75
USP28-210ENST00000542033 FSHBP01225 129 aa4.13□□□□□ -1.75
USP28-210ENST00000542033 MTHFD1P11586 935 aaKnown RBP4.13□□□□□ -1.75
USP28-210ENST00000542033 ALAS1P13196 640 aa4.13□□□□□ -1.75
USP28-210ENST00000542033 SMARCA1P28370 1054 aa4.13□□□□□ -1.75
USP28-210ENST00000542033 PTGS2P35354 604 aa4.13□□□□□ -1.75
USP28-210ENST00000542033 ATP8B2P98198 1209 aa4.13□□□□□ -1.75
USP28-210ENST00000542033 TOB2Q14106 344 aaPredicted RBP4.13□□□□□ -1.75
USP28-210ENST00000542033 RABL3Q5HYI8 236 aa4.13□□□□□ -1.75
USP28-210ENST00000542033 C1QL3Q5VWW1 255 aa4.13□□□□□ -1.75
USP28-210ENST00000542033 SEM1Q6ZVN7 128 aa4.13□□□□□ -1.75
USP28-210ENST00000542033 PLXDC1Q8IUK5 500 aa4.13□□□□□ -1.75
USP28-210ENST00000542033 TPH2Q8IWU9 490 aa4.13□□□□□ -1.75
USP28-210ENST00000542033 GRAMD1CQ8IYS0 662 aa4.13□□□□□ -1.75
USP28-210ENST00000542033 IFI44Q8TCB0 444 aa4.13□□□□□ -1.75
USP28-210ENST00000542033 NSUN6Q8TEA1 469 aaKnown RBP4.13□□□□□ -1.75
USP28-210ENST00000542033 ZNF483Q8TF39 744 aaPredicted RBP4.13□□□□□ -1.75
USP28-210ENST00000542033 RGMAQ96B86 450 aa4.13□□□□□ -1.75
USP28-210ENST00000542033 MVB12AQ96EY5 273 aa4.13□□□□□ -1.75
USP28-210ENST00000542033 PKNOX2Q96KN3 472 aa4.13□□□□□ -1.75
USP28-210ENST00000542033 AIFM3Q96NN9 605 aa4.13□□□□□ -1.75
USP28-210ENST00000542033 PSMD1Q99460 953 aa4.13□□□□□ -1.75
USP28-210ENST00000542033 NDC1Q9BTX1 674 aa4.13□□□□□ -1.75
USP28-210ENST00000542033 GTPBP4Q9BZE4 634 aaKnown RBP4.13□□□□□ -1.75
USP28-210ENST00000542033 REXO4Q9GZR2 422 aaKnown RBP4.13□□□□□ -1.75
USP28-210ENST00000542033 C11orf54Q9H0W9 315 aaPredicted RBP4.13□□□□□ -1.75
USP28-210ENST00000542033 NMRK2Q9NPI5 230 aa4.13□□□□□ -1.75
USP28-210ENST00000542033 KMT5AQ9NQR1 393 aa4.13□□□□□ -1.75
USP28-210ENST00000542033 CALCOCO1Q9P1Z2 691 aa4.13□□□□□ -1.75
USP28-210ENST00000542033 NOB1Q9ULX3 412 aaKnown RBP4.13□□□□□ -1.75
USP28-210ENST00000542033 SORCS3Q9UPU3 1222 aa4.13□□□□□ -1.75
USP28-210ENST00000542033 POLHQ9Y253 713 aa4.13□□□□□ -1.75
USP28-210ENST00000542033 REXO2Q9Y3B8 237 aaKnown RBP4.13□□□□□ -1.75
USP28-210ENST00000542033 DIRC3C9JPN6 131 aa4.12□□□□□ -1.75
USP28-210ENST00000542033 WNT10BO00744 389 aa4.12□□□□□ -1.75
USP28-210ENST00000542033 SLC16A6O15403 523 aa4.12□□□□□ -1.75
USP28-210ENST00000542033 AP1G1O43747 822 aa4.12□□□□□ -1.75
USP28-210ENST00000542033 SCAF4O95104 1147 aaKnown RBP4.12□□□□□ -1.75
USP28-210ENST00000542033 ARIH2O95376 493 aa4.12□□□□□ -1.75
USP28-210ENST00000542033 FTLP02792 175 aaPredicted RBP4.12□□□□□ -1.75
USP28-210ENST00000542033 ADH4P08319 380 aa4.12□□□□□ -1.75
USP28-210ENST00000542033 MAKP20794 623 aa4.12□□□□□ -1.75
USP28-210ENST00000542033 APOBEC3AP31941 199 aaPredicted RBP4.12□□□□□ -1.75
USP28-210ENST00000542033 TBX4P57082 545 aa4.12□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms