RNA–Protein interactions for RNA: ENST00000541108.1

CLIP1-215, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 1,658 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-215ENST00000541108 ANKRD36BP1Q96IX9 119 aa19.14■□□□□ 0.65
CLIP1-215ENST00000541108 TSPAN18Q96SJ8 248 aa19.14■□□□□ 0.65
CLIP1-215ENST00000541108 UBE2TQ9NPD8 197 aaPredicted RBP19.14■□□□□ 0.65
CLIP1-215ENST00000541108 BZW2Q9Y6E2 419 aaKnown RBP19.14■□□□□ 0.65
CLIP1-215ENST00000541108 CCP110O43303 1012 aa19.13■□□□□ 0.65
CLIP1-215ENST00000541108 PHACTR2O75167 634 aa19.13■□□□□ 0.65
CLIP1-215ENST00000541108 LRRN2O75325 713 aa19.13■□□□□ 0.65
CLIP1-215ENST00000541108 HLA-DRAP01903 254 aa19.13■□□□□ 0.65
CLIP1-215ENST00000541108 TNNC2P02585 160 aa19.13■□□□□ 0.65
CLIP1-215ENST00000541108 TMEM191BP0C7N4 346 aa19.13■□□□□ 0.65
CLIP1-215ENST00000541108 CCDC172P0C7W6 258 aa19.13■□□□□ 0.65
CLIP1-215ENST00000541108 CAPN2P17655 700 aa19.13■□□□□ 0.65
CLIP1-215ENST00000541108 STAT1P42224 750 aa19.13■□□□□ 0.65
CLIP1-215ENST00000541108 GCNT1Q02742 428 aa19.13■□□□□ 0.65
CLIP1-215ENST00000541108 NFX1Q12986 1120 aaKnown RBP19.13■□□□□ 0.65
CLIP1-215ENST00000541108 RAPGEF1Q13905 1077 aa19.13■□□□□ 0.65
CLIP1-215ENST00000541108 UBXN11Q5T124 520 aa19.13■□□□□ 0.65
CLIP1-215ENST00000541108 ZNF618Q5T7W0 954 aa19.13■□□□□ 0.65
CLIP1-215ENST00000541108 E4F1Q66K89 784 aaPredicted RBP19.13■□□□□ 0.65
CLIP1-215ENST00000541108 ENOSF1Q7L5Y1 443 aa19.13■□□□□ 0.65
CLIP1-215ENST00000541108 FAM126BQ8IXS8 530 aa19.13■□□□□ 0.65
CLIP1-215ENST00000541108 EFCAB13Q8IY85 973 aa19.13■□□□□ 0.65
CLIP1-215ENST00000541108 TRAIPQ9BWF2 469 aa19.13■□□□□ 0.65
CLIP1-215ENST00000541108 DERAQ9Y315 318 aa19.13■□□□□ 0.65
CLIP1-215ENST00000541108 CITO14578 2027 aa19.13■□□□□ 0.65
CLIP1-215ENST00000541108 SSU72P8A0A1W2PR75 194 aa19.12■□□□□ 0.65
CLIP1-215ENST00000541108 F8VZ95 297 aa19.12■□□□□ 0.65
CLIP1-215ENST00000541108 MEFVO15553 781 aaPredicted RBP19.12■□□□□ 0.65
CLIP1-215ENST00000541108 VNN1O95497 513 aa19.12■□□□□ 0.65
CLIP1-215ENST00000541108 SERPING1P05155 500 aa19.12■□□□□ 0.65
CLIP1-215ENST00000541108 PIK3CAP42336 1068 aa19.12■□□□□ 0.65
CLIP1-215ENST00000541108 MFAP3P55082 362 aa19.12■□□□□ 0.65
CLIP1-215ENST00000541108 TFAMQ00059 246 aaKnown RBP19.12■□□□□ 0.65
CLIP1-215ENST00000541108 NCOA4Q13772 614 aa19.12■□□□□ 0.65
CLIP1-215ENST00000541108 DRAP1Q14919 205 aaPredicted RBP19.12■□□□□ 0.65
CLIP1-215ENST00000541108 HGSNATQ68CP4 663 aa19.12■□□□□ 0.65
CLIP1-215ENST00000541108 SMYD5Q6GMV2 418 aa19.12■□□□□ 0.65
CLIP1-215ENST00000541108 TWF2Q6IBS0 349 aaKnown RBP19.12■□□□□ 0.65
CLIP1-215ENST00000541108 GJB7Q6PEY0 223 aa19.12■□□□□ 0.65
CLIP1-215ENST00000541108 RAD9BQ6WBX8 426 aa19.12■□□□□ 0.65
CLIP1-215ENST00000541108 FAM43BQ6ZT52 329 aaPredicted RBP19.12■□□□□ 0.65
CLIP1-215ENST00000541108 HELQQ8TDG4 1101 aa19.12■□□□□ 0.65
CLIP1-215ENST00000541108 JAKMIP2Q96AA8 810 aa19.12■□□□□ 0.65
CLIP1-215ENST00000541108 MTMR12Q9C0I1 747 aa19.12■□□□□ 0.65
CLIP1-215ENST00000541108 AGO3Q9H9G7 860 aaKnown RBP19.12■□□□□ 0.65
CLIP1-215ENST00000541108 NHEJ1Q9H9Q4 299 aaPredicted RBP19.12■□□□□ 0.65
CLIP1-215ENST00000541108 ERVK-5Q9HDB9 667 aa19.12■□□□□ 0.65
CLIP1-215ENST00000541108 SNTG2Q9NY99 539 aa19.12■□□□□ 0.65
CLIP1-215ENST00000541108 EPN1Q9Y6I3 576 aaPredicted RBP19.12■□□□□ 0.65
CLIP1-215ENST00000541108 CD4P01730 458 aa19.11■□□□□ 0.65
CLIP1-215ENST00000541108 TFRCP02786 760 aaKnown RBP19.11■□□□□ 0.65
CLIP1-215ENST00000541108 FERP16591 822 aa19.11■□□□□ 0.65
CLIP1-215ENST00000541108 ZSCAN20P17040 1043 aaPredicted RBP19.11■□□□□ 0.65
CLIP1-215ENST00000541108 SOX5P35711 763 aa19.11■□□□□ 0.65
CLIP1-215ENST00000541108 PRKCIP41743 596 aa19.11■□□□□ 0.65
CLIP1-215ENST00000541108 MAPK8IP2Q13387 824 aaPredicted RBP19.11■□□□□ 0.65
CLIP1-215ENST00000541108 SGSM1Q2NKQ1 1148 aa19.11■□□□□ 0.65
CLIP1-215ENST00000541108 ALKAL1Q6UXT8 129 aa19.11■□□□□ 0.65
CLIP1-215ENST00000541108 IRF2BP2Q7Z5L9 587 aa19.11■□□□□ 0.65
CLIP1-215ENST00000541108 PPM1KQ8N3J5 372 aa19.11■□□□□ 0.65
CLIP1-215ENST00000541108 CCDC42Q96M95 316 aa19.11■□□□□ 0.65
CLIP1-215ENST00000541108 IMPG2Q9BZV3 1241 aa19.11■□□□□ 0.65
CLIP1-215ENST00000541108 C1orf112Q9NSG2 853 aa19.11■□□□□ 0.65
CLIP1-215ENST00000541108 ARHGAP20Q9P2F6 1191 aa19.11■□□□□ 0.65
CLIP1-215ENST00000541108 AJAP1Q9UKB5 411 aaPredicted RBP19.11■□□□□ 0.65
CLIP1-215ENST00000541108 PADI3Q9ULW8 664 aa19.11■□□□□ 0.65
CLIP1-215ENST00000541108 ZSCAN12O43309 604 aa19.11■□□□□ 0.65
CLIP1-215ENST00000541108 HSPA1AP0DMV8 641 aaKnown RBP19.11■□□□□ 0.65
CLIP1-215ENST00000541108 HSPA1BP0DMV9 641 aaKnown RBP19.11■□□□□ 0.65
CLIP1-215ENST00000541108 CYLC1P35663 651 aaPredicted RBP19.11■□□□□ 0.65
CLIP1-215ENST00000541108 PAK2Q13177 524 aa19.11■□□□□ 0.65
CLIP1-215ENST00000541108 BFSP2Q13515 415 aa19.11■□□□□ 0.65
CLIP1-215ENST00000541108 LPIN1Q14693 890 aa19.11■□□□□ 0.65
CLIP1-215ENST00000541108 ASIC2Q16515 512 aa19.11■□□□□ 0.65
CLIP1-215ENST00000541108 C1orf53Q5VUE5 145 aa19.11■□□□□ 0.65
CLIP1-215ENST00000541108 JADE1Q6IE81 842 aa19.11■□□□□ 0.65
CLIP1-215ENST00000541108 ARHGEF19Q8IW93 802 aa19.11■□□□□ 0.65
CLIP1-215ENST00000541108 CCAR2Q8N163 923 aaKnown RBP19.11■□□□□ 0.65
CLIP1-215ENST00000541108 ANKLE1Q8NAG6 615 aa19.11■□□□□ 0.65
CLIP1-215ENST00000541108 SNX27Q96L92 541 aa19.11■□□□□ 0.65
CLIP1-215ENST00000541108 GPR88Q9GZN0 384 aa19.11■□□□□ 0.65
CLIP1-215ENST00000541108 NXF3Q9H4D5 531 aaKnown RBP19.11■□□□□ 0.65
CLIP1-215ENST00000541108 SPTLC3Q9NUV7 552 aa19.11■□□□□ 0.65
CLIP1-215ENST00000541108 IPPQ9Y573 584 aa19.11■□□□□ 0.65
CLIP1-215ENST00000541108 NDUFA10O95299 355 aa19.1■□□□□ 0.65
CLIP1-215ENST00000541108 ASS1P00966 412 aaKnown RBP19.1■□□□□ 0.65
CLIP1-215ENST00000541108 CST3P01034 146 aaPredicted RBP19.1■□□□□ 0.65
CLIP1-215ENST00000541108 NFICP08651 508 aa19.1■□□□□ 0.65
CLIP1-215ENST00000541108 GJA8P48165 433 aa19.1■□□□□ 0.65
CLIP1-215ENST00000541108 MNX1P50219 401 aaPredicted RBP19.1■□□□□ 0.65
CLIP1-215ENST00000541108 TRPC3Q13507 836 aa19.1■□□□□ 0.65
CLIP1-215ENST00000541108 MTF1Q14872 753 aa19.1■□□□□ 0.65
CLIP1-215ENST00000541108 TMEM132DQ14C87 1099 aa19.1■□□□□ 0.65
CLIP1-215ENST00000541108 XKR4Q5GH76 650 aa19.1■□□□□ 0.65
CLIP1-215ENST00000541108 TRAF7Q6Q0C0 670 aa19.1■□□□□ 0.65
CLIP1-215ENST00000541108 ANKRD33Q7Z3H0 272 aa19.1■□□□□ 0.65
CLIP1-215ENST00000541108 HACE1Q8IYU2 909 aa19.1■□□□□ 0.65
CLIP1-215ENST00000541108 TAF4BQ92750 862 aa19.1■□□□□ 0.65
CLIP1-215ENST00000541108 FAXDC2Q96IV6 333 aa19.1■□□□□ 0.65
CLIP1-215ENST00000541108 CNTN3Q9P232 1028 aa19.1■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms