RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 NT5DC1Q5TFE4 455 aa14.94□□□□□ -0.02
SS18-204ENST00000539244 HAUS3Q68CZ6 603 aa14.94□□□□□ -0.02
SS18-204ENST00000539244 ANKS3Q6ZW76 656 aa14.94□□□□□ -0.02
SS18-204ENST00000539244 KIFAP3Q92845 792 aa14.94□□□□□ -0.02
SS18-204ENST00000539244 DDX27Q96GQ7 796 aaKnown RBP14.94□□□□□ -0.02
SS18-204ENST00000539244 DNMT3BQ9UBC3 853 aaKnown RBP14.94□□□□□ -0.02
SS18-204ENST00000539244 FBXO4Q9UKT5 387 aa14.94□□□□□ -0.02
SS18-204ENST00000539244 POLIQ9UNA4 740 aa14.94□□□□□ -0.02
SS18-204ENST00000539244 USP20Q9Y2K6 914 aa14.94□□□□□ -0.02
SS18-204ENST00000539244 GDAQ9Y2T3 454 aa14.94□□□□□ -0.02
SS18-204ENST00000539244 FRYLO94915 3013 aa14.94□□□□□ -0.02
SS18-204ENST00000539244 ARHGEF37A1IGU5 675 aa14.93□□□□□ -0.02
SS18-204ENST00000539244 TRAPPC3O43617 180 aa14.93□□□□□ -0.02
SS18-204ENST00000539244 LRRN2O75325 713 aa14.93□□□□□ -0.02
SS18-204ENST00000539244 ECI2O75521 394 aa14.93□□□□□ -0.02
SS18-204ENST00000539244 GLRA4Q5JXX5 417 aa14.93□□□□□ -0.02
SS18-204ENST00000539244 ATF7IP2Q5U623 682 aa14.93□□□□□ -0.02
SS18-204ENST00000539244 SLC8B1Q6J4K2 584 aa14.93□□□□□ -0.02
SS18-204ENST00000539244 APBB1IPQ7Z5R6 666 aaPredicted RBP14.93□□□□□ -0.02
SS18-204ENST00000539244 SUMF1Q8NBK3 374 aa14.93□□□□□ -0.02
SS18-204ENST00000539244 C3orf58Q8NDZ4 430 aa14.93□□□□□ -0.02
SS18-204ENST00000539244 RUBCNQ92622 972 aa14.93□□□□□ -0.02
SS18-204ENST00000539244 RMDN1Q96DB5 314 aa14.93□□□□□ -0.02
SS18-204ENST00000539244 IFT74Q96LB3 600 aa14.93□□□□□ -0.02
SS18-204ENST00000539244 KIFC3Q9BVG8 833 aa14.93□□□□□ -0.02
SS18-204ENST00000539244 BCO2Q9BYV7 579 aa14.93□□□□□ -0.02
SS18-204ENST00000539244 FOXP1Q9H334 677 aaPredicted RBP14.93□□□□□ -0.02
SS18-204ENST00000539244 HCFC1R1Q9NWW0 138 aa14.93□□□□□ -0.02
SS18-204ENST00000539244 GDE1Q9NZC3 331 aa14.93□□□□□ -0.02
SS18-204ENST00000539244 TNFSF13BQ9Y275 285 aa14.93□□□□□ -0.02
SS18-204ENST00000539244 CDY1Q9Y6F8 540 aa14.93□□□□□ -0.02
SS18-204ENST00000539244 COL4A3Q01955 1670 aa14.93□□□□□ -0.02
SS18-204ENST00000539244 LIG1P18858 919 aa14.92□□□□□ -0.02
SS18-204ENST00000539244 TKTP29401 623 aaKnown RBP14.92□□□□□ -0.02
SS18-204ENST00000539244 GRM5P41594 1212 aa14.92□□□□□ -0.02
SS18-204ENST00000539244 FXR2P51116 673 aaKnown RBP eCLIP14.92□□□□□ -0.02
SS18-204ENST00000539244 NEK4P51957 841 aa14.92□□□□□ -0.02
SS18-204ENST00000539244 ECM1Q16610 540 aa14.92□□□□□ -0.02
SS18-204ENST00000539244 ALKAL1Q6UXT8 129 aa14.92□□□□□ -0.02
SS18-204ENST00000539244 ZNF461Q8TAF7 563 aa14.92□□□□□ -0.02
SS18-204ENST00000539244 KXD1Q9BQD3 176 aa14.92□□□□□ -0.02
SS18-204ENST00000539244 PTPRHQ9HD43 1115 aa14.92□□□□□ -0.02
SS18-204ENST00000539244 LTB4R2Q9NPC1 389 aa14.92□□□□□ -0.02
SS18-204ENST00000539244 GPR179Q6PRD1 2367 aa14.92□□□□□ -0.02
SS18-204ENST00000539244 SMIM28A0A1B0GU29 152 aa14.91□□□□□ -0.02
SS18-204ENST00000539244 K7ERI5 159 aa14.91□□□□□ -0.02
SS18-204ENST00000539244 SPTLC1O15269 473 aa14.91□□□□□ -0.02
SS18-204ENST00000539244 TBC1D4O60343 1298 aa14.91□□□□□ -0.02
SS18-204ENST00000539244 ABLIM3O94929 683 aa14.91□□□□□ -0.02
SS18-204ENST00000539244 RHOP08100 348 aa14.91□□□□□ -0.02
SS18-204ENST00000539244 TRAPPC10P48553 1259 aa14.91□□□□□ -0.02
SS18-204ENST00000539244 ROR1Q01973 937 aa14.91□□□□□ -0.02
SS18-204ENST00000539244 GUCY1B3Q02153 619 aa14.91□□□□□ -0.02
SS18-204ENST00000539244 SOX4Q06945 474 aaPredicted RBP14.91□□□□□ -0.02
SS18-204ENST00000539244 ZNF174Q15697 407 aa14.91□□□□□ -0.02
SS18-204ENST00000539244 SLC5A9Q2M3M2 681 aa14.91□□□□□ -0.02
SS18-204ENST00000539244 KIAA2013Q8IYS2 634 aa14.91□□□□□ -0.02
SS18-204ENST00000539244 C4orf32Q8N8J7 132 aa14.91□□□□□ -0.02
SS18-204ENST00000539244 NELL1Q92832 810 aa14.91□□□□□ -0.02
SS18-204ENST00000539244 CLDN23Q96B33 292 aa14.91□□□□□ -0.02
SS18-204ENST00000539244 NELL2Q99435 816 aa14.91□□□□□ -0.02
SS18-204ENST00000539244 ACO2Q99798 780 aaKnown RBP14.91□□□□□ -0.02
SS18-204ENST00000539244 BHMT2Q9H2M3 363 aa14.91□□□□□ -0.02
SS18-204ENST00000539244 GOLGA2P5Q9HBQ8 144 aa14.91□□□□□ -0.02
SS18-204ENST00000539244 TOPORSQ9NS56 1045 aaPredicted RBP14.91□□□□□ -0.02
SS18-204ENST00000539244 SLC38A7Q9NVC3 462 aa14.91□□□□□ -0.02
SS18-204ENST00000539244 MRPS23Q9Y3D9 190 aaKnown RBP14.91□□□□□ -0.02
SS18-204ENST00000539244 MTF2Q9Y483 593 aaPredicted RBP14.91□□□□□ -0.02
SS18-204ENST00000539244 CEP250Q9BV73 2442 aa14.91□□□□□ -0.02
SS18-204ENST00000539244 PHLPP2Q6ZVD8 1323 aa14.91□□□□□ -0.02
SS18-204ENST00000539244 CITO14578 2027 aa14.9□□□□□ -0.02
SS18-204ENST00000539244 WDR27A2RRH5 827 aa14.9□□□□□ -0.02
SS18-204ENST00000539244 FAM170BA6NMN3 283 aa14.9□□□□□ -0.02
SS18-204ENST00000539244 SYN3O14994 580 aa14.9□□□□□ -0.02
SS18-204ENST00000539244 LAMTOR5O43504 91 aa14.9□□□□□ -0.02
SS18-204ENST00000539244 KINO60870 393 aaKnown RBP14.9□□□□□ -0.02
SS18-204ENST00000539244 CCT6AP40227 531 aaKnown RBP14.9□□□□□ -0.02
SS18-204ENST00000539244 BRCC3P46736 316 aa14.9□□□□□ -0.02
SS18-204ENST00000539244 RPS9P46781 194 aaKnown RBP14.9□□□□□ -0.02
SS18-204ENST00000539244 YARSP54577 528 aaKnown RBP14.9□□□□□ -0.02
SS18-204ENST00000539244 UBXN2BQ14CS0 331 aa14.9□□□□□ -0.02
SS18-204ENST00000539244 TTC38Q5R3I4 469 aa14.9□□□□□ -0.02
SS18-204ENST00000539244 ZBTB41Q5SVQ8 909 aa14.9□□□□□ -0.02
SS18-204ENST00000539244 POTEHQ6S545 545 aa14.9□□□□□ -0.02
SS18-204ENST00000539244 CEP120Q8N960 986 aa14.9□□□□□ -0.02
SS18-204ENST00000539244 FBXO18Q8NFZ0 1043 aa14.9□□□□□ -0.02
SS18-204ENST00000539244 ING5Q8WYH8 240 aa14.9□□□□□ -0.02
SS18-204ENST00000539244 C8orf76Q96K31 380 aa14.9□□□□□ -0.02
SS18-204ENST00000539244 LLPHQ9BRT6 129 aaKnown RBP14.9□□□□□ -0.02
SS18-204ENST00000539244 CDT1Q9H211 546 aa14.9□□□□□ -0.02
SS18-204ENST00000539244 TMEM134Q9H6X4 195 aa14.9□□□□□ -0.02
SS18-204ENST00000539244 POLD4Q9HCU8 107 aa14.9□□□□□ -0.02
SS18-204ENST00000539244 SPATA6Q9NWH7 488 aaPredicted RBP14.9□□□□□ -0.02
SS18-204ENST00000539244 DLL3Q9NYJ7 618 aa14.9□□□□□ -0.02
SS18-204ENST00000539244 ARHGAP28Q9P2N2 729 aa14.9□□□□□ -0.02
SS18-204ENST00000539244 PCDHGA2Q9Y5H1 932 aa14.9□□□□□ -0.02
SS18-204ENST00000539244 STK24Q9Y6E0 443 aa14.9□□□□□ -0.02
SS18-204ENST00000539244 SHISA7A6NL88 538 aa14.89□□□□□ -0.03
SS18-204ENST00000539244 I3L4J1 428 aa14.89□□□□□ -0.03
SS18-204ENST00000539244 MICAL2O94851 1124 aa14.89□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms