RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 GPR62Q9BZJ7 368 aa13.79□□□□□ -0.2
CLSTN3-208ENST00000538933 IFT122Q9HBG6 1241 aa13.79□□□□□ -0.2
CLSTN3-208ENST00000538933 AGPAT5Q9NUQ2 364 aa13.79□□□□□ -0.2
CLSTN3-208ENST00000538933 PCDHA7Q9UN72 937 aa13.79□□□□□ -0.2
CLSTN3-208ENST00000538933 SRPRBQ9Y5M8 271 aaKnown RBP13.79□□□□□ -0.2
CLSTN3-208ENST00000538933 CNTNAP2Q9UHC6 1331 aa13.79□□□□□ -0.2
CLSTN3-208ENST00000538933 SDK1Q7Z5N4 2213 aa13.79□□□□□ -0.2
CLSTN3-208ENST00000538933 COL4A2P08572 1712 aa13.78□□□□□ -0.2
CLSTN3-208ENST00000538933 LOC400499M0QZD8 3231 aa13.78□□□□□ -0.2
CLSTN3-208ENST00000538933 TMEM150BA6NC51 233 aa13.78□□□□□ -0.2
CLSTN3-208ENST00000538933 EDIL3O43854 480 aa13.78□□□□□ -0.2
CLSTN3-208ENST00000538933 RPL17P18621 184 aaKnown RBP13.78□□□□□ -0.2
CLSTN3-208ENST00000538933 ADCY1Q08828 1119 aa13.78□□□□□ -0.2
CLSTN3-208ENST00000538933 DMWDQ09019 674 aa13.78□□□□□ -0.2
CLSTN3-208ENST00000538933 NCAPH2Q6IBW4 605 aa13.78□□□□□ -0.2
CLSTN3-208ENST00000538933 TPRG1Q6ZUI0 275 aa13.78□□□□□ -0.2
CLSTN3-208ENST00000538933 CATSPER4Q7RTX7 472 aa13.78□□□□□ -0.2
CLSTN3-208ENST00000538933 ERMNQ8TAM6 284 aa13.78□□□□□ -0.2
CLSTN3-208ENST00000538933 ITFG1Q8TB96 612 aa13.78□□□□□ -0.2
CLSTN3-208ENST00000538933 MTMR9Q96QG7 549 aa13.78□□□□□ -0.2
CLSTN3-208ENST00000538933 KXD1Q9BQD3 176 aa13.78□□□□□ -0.2
CLSTN3-208ENST00000538933 INO80BQ9C086 356 aaPredicted RBP13.78□□□□□ -0.2
CLSTN3-208ENST00000538933 KCNMB3Q9NPA1 279 aa13.78□□□□□ -0.2
CLSTN3-208ENST00000538933 DISC1Q9NRI5 854 aa13.78□□□□□ -0.2
CLSTN3-208ENST00000538933 MIOSQ9NXC5 875 aa13.78□□□□□ -0.2
CLSTN3-208ENST00000538933 FAM13BQ9NYF5 915 aa13.78□□□□□ -0.2
CLSTN3-208ENST00000538933 MORC2Q9Y6X9 1032 aaPredicted RBP13.78□□□□□ -0.2
CLSTN3-208ENST00000538933 LAMA5O15230 3695 aa13.78□□□□□ -0.2
CLSTN3-208ENST00000538933 WDR64B1ANS9 1081 aa13.77□□□□□ -0.21
CLSTN3-208ENST00000538933 NCAM2O15394 837 aa13.77□□□□□ -0.21
CLSTN3-208ENST00000538933 HRO43593 1189 aa13.77□□□□□ -0.21
CLSTN3-208ENST00000538933 CHMP2AO43633 222 aa13.77□□□□□ -0.21
CLSTN3-208ENST00000538933 LONP1P36776 959 aaKnown RBP13.77□□□□□ -0.21
CLSTN3-208ENST00000538933 OR1G1P47890 313 aa13.77□□□□□ -0.21
CLSTN3-208ENST00000538933 NRLP54845 237 aa13.77□□□□□ -0.21
CLSTN3-208ENST00000538933 UBE2HP62256 183 aa13.77□□□□□ -0.21
CLSTN3-208ENST00000538933 ADALQ6DHV7 355 aa13.77□□□□□ -0.21
CLSTN3-208ENST00000538933 ZNF852Q6ZMS4 543 aa13.77□□□□□ -0.21
CLSTN3-208ENST00000538933 CCDC73Q6ZRK6 1079 aa13.77□□□□□ -0.21
CLSTN3-208ENST00000538933 GLYCTKQ8IVS8 523 aa13.77□□□□□ -0.21
CLSTN3-208ENST00000538933 C4orf32Q8N8J7 132 aa13.77□□□□□ -0.21
CLSTN3-208ENST00000538933 SMG8Q8ND04 991 aaKnown RBP13.77□□□□□ -0.21
CLSTN3-208ENST00000538933 ETNPPLQ8TBG4 499 aa13.77□□□□□ -0.21
CLSTN3-208ENST00000538933 DDX1Q92499 740 aaKnown RBP13.77□□□□□ -0.21
CLSTN3-208ENST00000538933 SLC5A5Q92911 643 aa13.77□□□□□ -0.21
CLSTN3-208ENST00000538933 GJA10Q969M2 543 aa13.77□□□□□ -0.21
CLSTN3-208ENST00000538933 CDK5RAP3Q96JB5 506 aa13.77□□□□□ -0.21
CLSTN3-208ENST00000538933 CLIC6Q96NY7 704 aa13.77□□□□□ -0.21
CLSTN3-208ENST00000538933 RIT2Q99578 217 aa13.77□□□□□ -0.21
CLSTN3-208ENST00000538933 PLA2G2FQ9BZM2 168 aa13.77□□□□□ -0.21
CLSTN3-208ENST00000538933 CSRNP2Q9H175 543 aa13.77□□□□□ -0.21
CLSTN3-208ENST00000538933 RNF39Q9H2S5 420 aa13.77□□□□□ -0.21
CLSTN3-208ENST00000538933 CHRDQ9H2X0 955 aa13.77□□□□□ -0.21
CLSTN3-208ENST00000538933 MINDY3Q9H8M7 445 aa13.77□□□□□ -0.21
CLSTN3-208ENST00000538933 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP13.77□□□□□ -0.21
CLSTN3-208ENST00000538933 SUCLA2Q9P2R7 463 aaPredicted RBP13.77□□□□□ -0.21
CLSTN3-208ENST00000538933 LRWD1Q9UFC0 647 aa13.77□□□□□ -0.21
CLSTN3-208ENST00000538933 FBXO2Q9UK22 296 aaPredicted RBP13.77□□□□□ -0.21
CLSTN3-208ENST00000538933 RAB23Q9ULC3 237 aa13.77□□□□□ -0.21
CLSTN3-208ENST00000538933 SAMM50Q9Y512 469 aa13.77□□□□□ -0.21
CLSTN3-208ENST00000538933 FLNBO75369 2602 aaKnown RBP13.76□□□□□ -0.21
CLSTN3-208ENST00000538933 IGSF10Q6WRI0 2623 aa13.76□□□□□ -0.21
CLSTN3-208ENST00000538933 ARL5CA6NH57 179 aa13.76□□□□□ -0.21
CLSTN3-208ENST00000538933 MAFO75444 373 aaPredicted RBP13.76□□□□□ -0.21
CLSTN3-208ENST00000538933 HNRNPA1P09651 372 aaKnown RBP eCLIP13.76□□□□□ -0.21
CLSTN3-208ENST00000538933 UBA7P41226 1012 aa13.76□□□□□ -0.21
CLSTN3-208ENST00000538933 FXR2P51116 673 aaKnown RBP eCLIP13.76□□□□□ -0.21
CLSTN3-208ENST00000538933 ZRSR1Q15695 479 aaKnown RBP13.76□□□□□ -0.21
CLSTN3-208ENST00000538933 HAUS3Q68CZ6 603 aa13.76□□□□□ -0.21
CLSTN3-208ENST00000538933 RHPN2Q8IUC4 686 aa13.76□□□□□ -0.21
CLSTN3-208ENST00000538933 HAS1Q92839 578 aa13.76□□□□□ -0.21
CLSTN3-208ENST00000538933 AK8Q96MA6 479 aa13.76□□□□□ -0.21
CLSTN3-208ENST00000538933 SH2D3AQ9BRG2 576 aa13.76□□□□□ -0.21
CLSTN3-208ENST00000538933 HEBP1Q9NRV9 189 aa13.76□□□□□ -0.21
CLSTN3-208ENST00000538933 FBXW11Q9UKB1 542 aa13.76□□□□□ -0.21
CLSTN3-208ENST00000538933 STK24Q9Y6E0 443 aa13.76□□□□□ -0.21
CLSTN3-208ENST00000538933 SPAG17Q6Q759 2223 aa13.76□□□□□ -0.21
CLSTN3-208ENST00000538933 FREM2Q5SZK8 3169 aa13.76□□□□□ -0.21
CLSTN3-208ENST00000538933 VWA8A3KMH1 1905 aa13.75□□□□□ -0.21
CLSTN3-208ENST00000538933 DNM2P50570 870 aa13.75□□□□□ -0.21
CLSTN3-208ENST00000538933 LIMK1P53667 647 aa13.75□□□□□ -0.21
CLSTN3-208ENST00000538933 PDIA5Q14554 519 aa13.75□□□□□ -0.21
CLSTN3-208ENST00000538933 USP41Q3LFD5 358 aa13.75□□□□□ -0.21
CLSTN3-208ENST00000538933 MTERF2Q49AM1 385 aa13.75□□□□□ -0.21
CLSTN3-208ENST00000538933 KRT79Q5XKE5 535 aa13.75□□□□□ -0.21
CLSTN3-208ENST00000538933 MIER3Q7Z3K6 550 aa13.75□□□□□ -0.21
CLSTN3-208ENST00000538933 NPAS3Q8IXF0 933 aa13.75□□□□□ -0.21
CLSTN3-208ENST00000538933 FSIP1Q8NA03 581 aa13.75□□□□□ -0.21
CLSTN3-208ENST00000538933 ZNF579Q8NAF0 562 aaKnown RBP13.75□□□□□ -0.21
CLSTN3-208ENST00000538933 GSTCDQ8NEC7 633 aa13.75□□□□□ -0.21
CLSTN3-208ENST00000538933 CALML4Q96GE6 196 aa13.75□□□□□ -0.21
CLSTN3-208ENST00000538933 GAD1Q99259 594 aa13.75□□□□□ -0.21
CLSTN3-208ENST00000538933 CLSTN3Q9BQT9 956 aa13.75□□□□□ -0.21
CLSTN3-208ENST00000538933 CCDC39Q9UFE4 941 aa13.75□□□□□ -0.21
CLSTN3-208ENST00000538933 SMG1Q96Q15 3661 aaKnown RBP13.75□□□□□ -0.21
CLSTN3-208ENST00000538933 ASH1LQ9NR48 2969 aaKnown RBP13.74□□□□□ -0.21
CLSTN3-208ENST00000538933 TICRRQ7Z2Z1 1910 aa13.74□□□□□ -0.21
CLSTN3-208ENST00000538933 A0A1W2PQ27 194 aa13.74□□□□□ -0.21
CLSTN3-208ENST00000538933 A0A1W2PQ64 194 aa13.74□□□□□ -0.21
CLSTN3-208ENST00000538933 A0A1W2PQD8 194 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms