RNA–Protein interactions for RNA: ENST00000538570.5

COL4A6-208, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,528 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-208ENST00000538570 TMEM47Q9BQJ4 181 aa10.47□□□□□ -0.73
COL4A6-208ENST00000538570 POLR3FQ9H1D9 316 aaPredicted RBP10.47□□□□□ -0.73
COL4A6-208ENST00000538570 RAD21L1Q9H4I0 556 aa10.47□□□□□ -0.73
COL4A6-208ENST00000538570 USP6P35125 1406 aa10.47□□□□□ -0.73
COL4A6-208ENST00000538570 AP3B1O00203 1094 aa10.47□□□□□ -0.73
COL4A6-208ENST00000538570 ZNF263O14978 683 aa10.47□□□□□ -0.73
COL4A6-208ENST00000538570 ATP9BO43861 1147 aa10.47□□□□□ -0.73
COL4A6-208ENST00000538570 TBC1D4O60343 1298 aa10.47□□□□□ -0.73
COL4A6-208ENST00000538570 QARSP47897 775 aaKnown RBP10.47□□□□□ -0.73
COL4A6-208ENST00000538570 RCAN1P53805 252 aa10.47□□□□□ -0.73
COL4A6-208ENST00000538570 KDSRQ06136 332 aa10.47□□□□□ -0.73
COL4A6-208ENST00000538570 SFSWAPQ12872 951 aaKnown RBP10.47□□□□□ -0.73
COL4A6-208ENST00000538570 TXNRD1Q16881 649 aa10.47□□□□□ -0.73
COL4A6-208ENST00000538570 CIAPIN1Q6FI81 312 aa10.47□□□□□ -0.73
COL4A6-208ENST00000538570 CYB5R4Q7L1T6 521 aa10.47□□□□□ -0.73
COL4A6-208ENST00000538570 RAB42Q8N4Z0 105 aa10.47□□□□□ -0.73
COL4A6-208ENST00000538570 SLC10A4Q96EP9 437 aa10.47□□□□□ -0.73
COL4A6-208ENST00000538570 ATXN7L3BQ96GX2 97 aa10.47□□□□□ -0.73
COL4A6-208ENST00000538570 RAVER2Q9HCJ3 691 aaKnown RBP10.47□□□□□ -0.73
COL4A6-208ENST00000538570 TRIM39Q9HCM9 518 aa10.47□□□□□ -0.73
COL4A6-208ENST00000538570 GJB4Q9NTQ9 266 aa10.47□□□□□ -0.73
COL4A6-208ENST00000538570 FAM217BQ9NTX9 383 aaPredicted RBP10.47□□□□□ -0.73
COL4A6-208ENST00000538570 ZFATQ9P243 1243 aa10.47□□□□□ -0.73
COL4A6-208ENST00000538570 ROBO2Q9HCK4 1378 aa10.47□□□□□ -0.73
COL4A6-208ENST00000538570 HEG1Q9ULI3 1381 aa10.47□□□□□ -0.73
COL4A6-208ENST00000538570 S100A9P06702 114 aaKnown RBP10.46□□□□□ -0.73
COL4A6-208ENST00000538570 FAM200BP0CF97 657 aa10.46□□□□□ -0.73
COL4A6-208ENST00000538570 HMOX2P30519 316 aa10.46□□□□□ -0.73
COL4A6-208ENST00000538570 S100A5P33763 92 aa10.46□□□□□ -0.73
COL4A6-208ENST00000538570 EIF2B2P49770 351 aaKnown RBP10.46□□□□□ -0.73
COL4A6-208ENST00000538570 ZNF235Q14590 738 aa10.46□□□□□ -0.73
COL4A6-208ENST00000538570 ACCSLQ4AC99 568 aa10.46□□□□□ -0.73
COL4A6-208ENST00000538570 PID1Q7Z2X4 250 aa10.46□□□□□ -0.73
COL4A6-208ENST00000538570 ANKMY2Q8IV38 441 aa10.46□□□□□ -0.73
COL4A6-208ENST00000538570 SCFD1Q8WVM8 642 aa10.46□□□□□ -0.73
COL4A6-208ENST00000538570 HOXC10Q9NYD6 342 aa10.46□□□□□ -0.73
COL4A6-208ENST00000538570 RTN2O75298 545 aa10.46□□□□□ -0.73
COL4A6-208ENST00000538570 SERPINB1P30740 379 aa10.46□□□□□ -0.73
COL4A6-208ENST00000538570 MDH1BQ5I0G3 518 aa10.46□□□□□ -0.73
COL4A6-208ENST00000538570 PLEKHM3Q6ZWE6 761 aa10.46□□□□□ -0.73
COL4A6-208ENST00000538570 STAG2Q8N3U4 1231 aa10.46□□□□□ -0.73
COL4A6-208ENST00000538570 ATL2Q8NHH9 583 aa10.46□□□□□ -0.73
COL4A6-208ENST00000538570 OXER1Q8TDS5 423 aa10.46□□□□□ -0.73
COL4A6-208ENST00000538570 RNPC3Q96LT9 517 aaKnown RBP10.46□□□□□ -0.73
COL4A6-208ENST00000538570 GMEB1Q9Y692 573 aa10.46□□□□□ -0.73
COL4A6-208ENST00000538570 SYNMO15061 1565 aa10.46□□□□□ -0.73
COL4A6-208ENST00000538570 UGGT1Q9NYU2 1555 aa10.46□□□□□ -0.73
COL4A6-208ENST00000538570 PITPNM2Q9BZ72 1349 aa10.46□□□□□ -0.73
COL4A6-208ENST00000538570 MOCS2O96007 188 aaPredicted RBP10.46□□□□□ -0.73
COL4A6-208ENST00000538570 STAT3P40763 770 aa10.46□□□□□ -0.73
COL4A6-208ENST00000538570 ACTR2P61160 394 aa10.46□□□□□ -0.73
COL4A6-208ENST00000538570 VSNL1P62760 191 aa10.46□□□□□ -0.73
COL4A6-208ENST00000538570 GUF1Q8N442 669 aaKnown RBP10.46□□□□□ -0.73
COL4A6-208ENST00000538570 SERBP1Q8NC51 408 aaKnown RBP eCLIP10.46□□□□□ -0.73
COL4A6-208ENST00000538570 ASAP3Q8TDY4 903 aa10.46□□□□□ -0.73
COL4A6-208ENST00000538570 NSUN6Q8TEA1 469 aaKnown RBP10.46□□□□□ -0.73
COL4A6-208ENST00000538570 AGPAT1Q99943 283 aa10.46□□□□□ -0.73
COL4A6-208ENST00000538570 ALG13Q9NP73 1137 aaKnown RBP10.46□□□□□ -0.73
COL4A6-208ENST00000538570 POTEFA5A3E0 1075 aa10.46□□□□□ -0.74
COL4A6-208ENST00000538570 KRT16P08779 473 aa10.46□□□□□ -0.74
COL4A6-208ENST00000538570 POTEIP0CG38 1075 aa10.46□□□□□ -0.74
COL4A6-208ENST00000538570 RAD51Q06609 339 aa10.46□□□□□ -0.74
COL4A6-208ENST00000538570 AARS2Q5JTZ9 985 aaKnown RBP10.46□□□□□ -0.74
COL4A6-208ENST00000538570 DEPDC1Q5TB30 811 aa10.46□□□□□ -0.74
COL4A6-208ENST00000538570 ANKRD40Q6AI12 368 aa10.46□□□□□ -0.74
COL4A6-208ENST00000538570 POTEGQ6S5H5 508 aa10.46□□□□□ -0.74
COL4A6-208ENST00000538570 POTEEQ6S8J3 1075 aa10.46□□□□□ -0.74
COL4A6-208ENST00000538570 FRMD5Q7Z6J6 570 aa10.46□□□□□ -0.74
COL4A6-208ENST00000538570 SPATA4Q8NEY3 305 aa10.46□□□□□ -0.74
COL4A6-208ENST00000538570 RMDN1Q96DB5 314 aa10.46□□□□□ -0.74
COL4A6-208ENST00000538570 PGBD4Q96DM1 585 aa10.46□□□□□ -0.74
COL4A6-208ENST00000538570 PPP1R36Q96LQ0 422 aa10.46□□□□□ -0.74
COL4A6-208ENST00000538570 AMACRQ9UHK6 382 aa10.46□□□□□ -0.74
COL4A6-208ENST00000538570 A8MXQ7 604 aa10.46□□□□□ -0.74
COL4A6-208ENST00000538570 USP17L15C9J2P7 530 aa10.46□□□□□ -0.74
COL4A6-208ENST00000538570 USP17L13C9JLJ4 530 aa10.46□□□□□ -0.74
COL4A6-208ENST00000538570 USP17L11C9JVI0 530 aa10.46□□□□□ -0.74
COL4A6-208ENST00000538570 USP17L18D6R9N7 530 aa10.46□□□□□ -0.74
COL4A6-208ENST00000538570 USP17L22D6RA61 530 aa10.46□□□□□ -0.74
COL4A6-208ENST00000538570 USP17L17D6RBQ6 530 aa10.46□□□□□ -0.74
COL4A6-208ENST00000538570 USP17L19D6RCP7 530 aa10.46□□□□□ -0.74
COL4A6-208ENST00000538570 USP17L20D6RJB6 530 aa10.46□□□□□ -0.74
COL4A6-208ENST00000538570 USP17L24Q0WX57 530 aa10.46□□□□□ -0.74
COL4A6-208ENST00000538570 BYSLQ13895 437 aaKnown RBP10.46□□□□□ -0.74
COL4A6-208ENST00000538570 GRM4Q14833 912 aa10.46□□□□□ -0.74
COL4A6-208ENST00000538570 RCSD1Q6JBY9 416 aa10.46□□□□□ -0.74
COL4A6-208ENST00000538570 USP17L6PQ6QN14 398 aa10.46□□□□□ -0.74
COL4A6-208ENST00000538570 C16orf89Q6UX73 402 aa10.46□□□□□ -0.74
COL4A6-208ENST00000538570 HEATR4Q86WZ0 1026 aa10.46□□□□□ -0.74
COL4A6-208ENST00000538570 GLYCTKQ8IVS8 523 aa10.46□□□□□ -0.74
COL4A6-208ENST00000538570 AGGF1Q8N302 714 aaeCLIP10.46□□□□□ -0.74
COL4A6-208ENST00000538570 SPON2Q9BUD6 331 aa10.46□□□□□ -0.74
COL4A6-208ENST00000538570 TSSK1BQ9BXA7 367 aa10.46□□□□□ -0.74
COL4A6-208ENST00000538570 TMEM260Q9NX78 707 aa10.46□□□□□ -0.74
COL4A6-208ENST00000538570 RBAKQ9NYW8 714 aaPredicted RBP10.46□□□□□ -0.74
COL4A6-208ENST00000538570 PRR23D1E9PI22 279 aaPredicted RBP10.45□□□□□ -0.74
COL4A6-208ENST00000538570 TEX33O43247 280 aa10.45□□□□□ -0.74
COL4A6-208ENST00000538570 HNRNPRO43390 633 aaKnown RBP10.45□□□□□ -0.74
COL4A6-208ENST00000538570 ARIH2O95376 493 aa10.45□□□□□ -0.74
COL4A6-208ENST00000538570 PRR23D2P0DMB1 279 aaPredicted RBP10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms