RNA–Protein interactions for RNA: ENST00000536483.1

PRKDC-207, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 2

Gene PRKDC, Length 834 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-207ENST00000536483 ST13P5Q8NFI4 369 aaPredicted RBP13.66□□□□□ -0.22
PRKDC-207ENST00000536483 CDK5RAP3Q96JB5 506 aa13.66□□□□□ -0.22
PRKDC-207ENST00000536483 ACO2Q99798 780 aaKnown RBP13.66□□□□□ -0.22
PRKDC-207ENST00000536483 ADPGKQ9BRR6 497 aa13.66□□□□□ -0.22
PRKDC-207ENST00000536483 POLD4Q9HCU8 107 aa13.66□□□□□ -0.22
PRKDC-207ENST00000536483 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP13.66□□□□□ -0.22
PRKDC-207ENST00000536483 ZDHHC7Q9NXF8 308 aa13.66□□□□□ -0.22
PRKDC-207ENST00000536483 FNIP2Q9P278 1114 aa13.66□□□□□ -0.22
PRKDC-207ENST00000536483 ADAM28Q9UKQ2 775 aa13.66□□□□□ -0.22
PRKDC-207ENST00000536483 DCHS1Q96JQ0 3298 aa13.66□□□□□ -0.22
PRKDC-207ENST00000536483 TDRD15B5MCY1 1934 aaKnown RBP13.65□□□□□ -0.22
PRKDC-207ENST00000536483 ABLIM1O14639 778 aa13.65□□□□□ -0.22
PRKDC-207ENST00000536483 PAPLNO95428 1278 aa13.65□□□□□ -0.22
PRKDC-207ENST00000536483 SRFP11831 508 aa13.65□□□□□ -0.22
PRKDC-207ENST00000536483 LAMP2P13473 410 aa13.65□□□□□ -0.22
PRKDC-207ENST00000536483 NAB2Q15742 525 aa13.65□□□□□ -0.22
PRKDC-207ENST00000536483 RTP2Q5QGT7 225 aa13.65□□□□□ -0.22
PRKDC-207ENST00000536483 ATF7IP2Q5U623 682 aa13.65□□□□□ -0.22
PRKDC-207ENST00000536483 EEF1DP3Q658K8 133 aa13.65□□□□□ -0.22
PRKDC-207ENST00000536483 PRSS55Q6UWB4 352 aaPredicted RBP13.65□□□□□ -0.22
PRKDC-207ENST00000536483 GET4Q7L5D6 327 aaPredicted RBP13.65□□□□□ -0.22
PRKDC-207ENST00000536483 APBB1IPQ7Z5R6 666 aaPredicted RBP13.65□□□□□ -0.22
PRKDC-207ENST00000536483 ADSSL1Q8N142 457 aa13.65□□□□□ -0.22
PRKDC-207ENST00000536483 TMEM161BQ8NDZ6 487 aa13.65□□□□□ -0.22
PRKDC-207ENST00000536483 GPR152Q8TDT2 470 aa13.65□□□□□ -0.22
PRKDC-207ENST00000536483 RAD54LQ92698 747 aa13.65□□□□□ -0.22
PRKDC-207ENST00000536483 NXPE3Q969Y0 559 aa13.65□□□□□ -0.22
PRKDC-207ENST00000536483 PAAF1Q9BRP4 392 aa13.65□□□□□ -0.22
PRKDC-207ENST00000536483 KIFC3Q9BVG8 833 aa13.65□□□□□ -0.22
PRKDC-207ENST00000536483 PRKD2Q9BZL6 878 aa13.65□□□□□ -0.22
PRKDC-207ENST00000536483 KMT5AQ9NQR1 393 aa13.65□□□□□ -0.22
PRKDC-207ENST00000536483 LARSQ9P2J5 1176 aaKnown RBP13.65□□□□□ -0.22
PRKDC-207ENST00000536483 GVINP1Q7Z2Y8 2422 aa13.64□□□□□ -0.23
PRKDC-207ENST00000536483 DOCK8Q8NF50 2099 aa13.64□□□□□ -0.23
PRKDC-207ENST00000536483 CCDC169A6NNP5 214 aa13.64□□□□□ -0.23
PRKDC-207ENST00000536483 H0YCG3 227 aa13.64□□□□□ -0.23
PRKDC-207ENST00000536483 PTGESO14684 152 aa13.64□□□□□ -0.23
PRKDC-207ENST00000536483 MAPTP10636 758 aaKnown RBP13.64□□□□□ -0.23
PRKDC-207ENST00000536483 PLCG1P19174 1290 aa13.64□□□□□ -0.23
PRKDC-207ENST00000536483 RFX1P22670 979 aa13.64□□□□□ -0.23
PRKDC-207ENST00000536483 SMTNP53814 917 aa13.64□□□□□ -0.23
PRKDC-207ENST00000536483 NCKAP1LP55160 1127 aa13.64□□□□□ -0.23
PRKDC-207ENST00000536483 HSP90AA2PQ14568 343 aaPredicted RBP13.64□□□□□ -0.23
PRKDC-207ENST00000536483 FAM173BQ6P4H8 233 aa13.64□□□□□ -0.23
PRKDC-207ENST00000536483 ALKAL1Q6UXT8 129 aa13.64□□□□□ -0.23
PRKDC-207ENST00000536483 ZPBP2Q6X784 338 aa13.64□□□□□ -0.23
PRKDC-207ENST00000536483 HSCBQ8IWL3 235 aa13.64□□□□□ -0.23
PRKDC-207ENST00000536483 LINC00301Q8NCQ3 95 aa13.64□□□□□ -0.23
PRKDC-207ENST00000536483 HASPINQ8TF76 798 aa13.64□□□□□ -0.23
PRKDC-207ENST00000536483 EPSTI1Q96J88 318 aa13.64□□□□□ -0.23
PRKDC-207ENST00000536483 USP28Q96RU2 1077 aa13.64□□□□□ -0.23
PRKDC-207ENST00000536483 MRPL4Q9BYD3 311 aaKnown RBP13.64□□□□□ -0.23
PRKDC-207ENST00000536483 TBC1D17Q9HA65 648 aa13.64□□□□□ -0.23
PRKDC-207ENST00000536483 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.64□□□□□ -0.23
PRKDC-207ENST00000536483 STK17AQ9UEE5 414 aa13.64□□□□□ -0.23
PRKDC-207ENST00000536483 CASTOR2A6NHX0 329 aa13.63□□□□□ -0.23
PRKDC-207ENST00000536483 SFI1A8K8P3 1242 aa13.63□□□□□ -0.23
PRKDC-207ENST00000536483 ANHXE9PGG2 379 aa13.63□□□□□ -0.23
PRKDC-207ENST00000536483 ZMYND10O75800 440 aa13.63□□□□□ -0.23
PRKDC-207ENST00000536483 ABCD1P33897 745 aa13.63□□□□□ -0.23
PRKDC-207ENST00000536483 GRM5P41594 1212 aa13.63□□□□□ -0.23
PRKDC-207ENST00000536483 CREMQ03060 361 aa13.63□□□□□ -0.23
PRKDC-207ENST00000536483 TUSC3Q13454 348 aa13.63□□□□□ -0.23
PRKDC-207ENST00000536483 KARSQ15046 597 aaKnown RBP13.63□□□□□ -0.23
PRKDC-207ENST00000536483 ZRSR1Q15695 479 aaKnown RBP13.63□□□□□ -0.23
PRKDC-207ENST00000536483 SPECC1Q5M775 1068 aa13.63□□□□□ -0.23
PRKDC-207ENST00000536483 ATL3Q6DD88 541 aa13.63□□□□□ -0.23
PRKDC-207ENST00000536483 USP49Q70CQ1 688 aa13.63□□□□□ -0.23
PRKDC-207ENST00000536483 CEP57Q86XR8 500 aa13.63□□□□□ -0.23
PRKDC-207ENST00000536483 KRI1Q8N9T8 703 aaKnown RBP13.63□□□□□ -0.23
PRKDC-207ENST00000536483 LARP4BQ92615 738 aaKnown RBP13.63□□□□□ -0.23
PRKDC-207ENST00000536483 FIZ1Q96SL8 496 aa13.63□□□□□ -0.23
PRKDC-207ENST00000536483 PLIN2Q99541 437 aa13.63□□□□□ -0.23
PRKDC-207ENST00000536483 CXCL16Q9H2A7 254 aa13.63□□□□□ -0.23
PRKDC-207ENST00000536483 ST6GALNAC4Q9H4F1 302 aa13.63□□□□□ -0.23
PRKDC-207ENST00000536483 SNTG2Q9NY99 539 aa13.63□□□□□ -0.23
PRKDC-207ENST00000536483 USP20Q9Y2K6 914 aa13.63□□□□□ -0.23
PRKDC-207ENST00000536483 NUMBLQ9Y6R0 609 aa13.63□□□□□ -0.23
PRKDC-207ENST00000536483 SF3B1O75533 1304 aaKnown RBP eCLIP13.63□□□□□ -0.23
PRKDC-207ENST00000536483 MTCL1Q9Y4B5 1905 aaKnown RBP13.62□□□□□ -0.23
PRKDC-207ENST00000536483 EP300Q09472 2414 aaPredicted RBP13.62□□□□□ -0.23
PRKDC-207ENST00000536483 SLC16A4O15374 487 aa13.62□□□□□ -0.23
PRKDC-207ENST00000536483 PPP6R2O75170 966 aa13.62□□□□□ -0.23
PRKDC-207ENST00000536483 TOM1L1O75674 476 aa13.62□□□□□ -0.23
PRKDC-207ENST00000536483 RECQL4O94761 1208 aa13.62□□□□□ -0.23
PRKDC-207ENST00000536483 KIF4AO95239 1232 aa13.62□□□□□ -0.23
PRKDC-207ENST00000536483 YEATS4O95619 227 aa13.62□□□□□ -0.23
PRKDC-207ENST00000536483 PIGRP01833 764 aa13.62□□□□□ -0.23
PRKDC-207ENST00000536483 THP07101 528 aa13.62□□□□□ -0.23
PRKDC-207ENST00000536483 DCNP07585 359 aaKnown RBP13.62□□□□□ -0.23
PRKDC-207ENST00000536483 MCF2P10911 925 aa13.62□□□□□ -0.23
PRKDC-207ENST00000536483 FSHRP23945 695 aa13.62□□□□□ -0.23
PRKDC-207ENST00000536483 MARCKSP29966 332 aaPredicted RBP13.62□□□□□ -0.23
PRKDC-207ENST00000536483 NTHL1P78549 312 aa13.62□□□□□ -0.23
PRKDC-207ENST00000536483 HTR4Q13639 388 aa13.62□□□□□ -0.23
PRKDC-207ENST00000536483 TMEM132AQ24JP5 1023 aa13.62□□□□□ -0.23
PRKDC-207ENST00000536483 FAM171A1Q5VUB5 890 aa13.62□□□□□ -0.23
PRKDC-207ENST00000536483 GRASPQ7Z6J2 395 aaPredicted RBP13.62□□□□□ -0.23
PRKDC-207ENST00000536483 LNX1Q8TBB1 728 aaPredicted RBP13.62□□□□□ -0.23
PRKDC-207ENST00000536483 PPP1R10Q96QC0 940 aaKnown RBP13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms