RNA–Protein interactions for RNA: ENST00000534705.5

USP48-215, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 566 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-215ENST00000534705 RIN2Q8WYP3 895 aaPredicted RBP4.67□□□□□ -1.66
USP48-215ENST00000534705 TRHDEQ9UKU6 1024 aa4.67□□□□□ -1.66
USP48-215ENST00000534705 UHRF1BP1LA0JNW5 1464 aa4.67□□□□□ -1.66
USP48-215ENST00000534705 RAPGEF6Q8TEU7 1601 aa4.66□□□□□ -1.66
USP48-215ENST00000534705 MAP3K4Q9Y6R4 1608 aa4.66□□□□□ -1.66
USP48-215ENST00000534705 PROB1E7EW31 1015 aa4.66□□□□□ -1.66
USP48-215ENST00000534705 TRIM24O15164 1050 aa4.66□□□□□ -1.66
USP48-215ENST00000534705 PJA2O43164 708 aa4.66□□□□□ -1.66
USP48-215ENST00000534705 AKR1B10O60218 316 aa4.66□□□□□ -1.66
USP48-215ENST00000534705 RBP3P10745 1247 aa4.66□□□□□ -1.66
USP48-215ENST00000534705 APBA1Q02410 837 aa4.66□□□□□ -1.66
USP48-215ENST00000534705 PPP3CAQ08209 521 aa4.66□□□□□ -1.66
USP48-215ENST00000534705 MTMR1Q13613 665 aa4.66□□□□□ -1.66
USP48-215ENST00000534705 ZNF362Q5T0B9 420 aaPredicted RBP4.66□□□□□ -1.66
USP48-215ENST00000534705 ZNF572Q7Z3I7 529 aaPredicted RBP4.66□□□□□ -1.66
USP48-215ENST00000534705 TRMT2AQ8IZ69 625 aaKnown RBP4.66□□□□□ -1.66
USP48-215ENST00000534705 C1orf162Q8NEQ5 155 aaPredicted RBP4.66□□□□□ -1.66
USP48-215ENST00000534705 ATXN2LQ8WWM7 1075 aaKnown RBP4.66□□□□□ -1.66
USP48-215ENST00000534705 MNTQ99583 582 aa4.66□□□□□ -1.66
USP48-215ENST00000534705 CPPED1Q9BRF8 314 aaPredicted RBP4.66□□□□□ -1.66
USP48-215ENST00000534705 ADI1Q9BV57 179 aa4.66□□□□□ -1.66
USP48-215ENST00000534705 LSM14BQ9BX40 385 aaKnown RBP4.66□□□□□ -1.66
USP48-215ENST00000534705 CPEB1Q9BZB8 566 aaKnown RBP4.66□□□□□ -1.66
USP48-215ENST00000534705 SPEF1Q9Y4P9 236 aa4.66□□□□□ -1.66
USP48-215ENST00000534705 COL4A3Q01955 1670 aa4.66□□□□□ -1.66
USP48-215ENST00000534705 CFAP43Q8NDM7 1665 aa4.65□□□□□ -1.66
USP48-215ENST00000534705 SHTN1A0MZ66 631 aa4.65□□□□□ -1.67
USP48-215ENST00000534705 GRID2IPA4D2P6 1211 aa4.65□□□□□ -1.67
USP48-215ENST00000534705 ANKRD62A6NC57 917 aa4.65□□□□□ -1.67
USP48-215ENST00000534705 GRXCR1A8MXD5 290 aa4.65□□□□□ -1.67
USP48-215ENST00000534705 FZD9O00144 591 aa4.65□□□□□ -1.67
USP48-215ENST00000534705 IARSP41252 1262 aaKnown RBP4.65□□□□□ -1.67
USP48-215ENST00000534705 SP140Q13342 867 aa4.65□□□□□ -1.67
USP48-215ENST00000534705 VPS72Q15906 364 aa4.65□□□□□ -1.67
USP48-215ENST00000534705 PRAMEF14Q5SWL7 426 aa4.65□□□□□ -1.67
USP48-215ENST00000534705 LRRC55Q6ZSA7 311 aa4.65□□□□□ -1.67
USP48-215ENST00000534705 Q6ZVL8 140 aa4.65□□□□□ -1.67
USP48-215ENST00000534705 MB21D1Q8N884 522 aa4.65□□□□□ -1.67
USP48-215ENST00000534705 ABCF1Q8NE71 845 aaKnown RBP eCLIP4.65□□□□□ -1.67
USP48-215ENST00000534705 CASKIN2Q8WXE0 1202 aa4.65□□□□□ -1.67
USP48-215ENST00000534705 NELL1Q92832 810 aa4.65□□□□□ -1.67
USP48-215ENST00000534705 MLST8Q9BVC4 326 aa4.65□□□□□ -1.67
USP48-215ENST00000534705 SLC13A1Q9BZW2 595 aa4.65□□□□□ -1.67
USP48-215ENST00000534705 EPC1Q9H2F5 836 aa4.65□□□□□ -1.67
USP48-215ENST00000534705 SYNPO2LQ9H987 977 aa4.65□□□□□ -1.67
USP48-215ENST00000534705 CYP4F11Q9HBI6 524 aa4.65□□□□□ -1.67
USP48-215ENST00000534705 LANCL2Q9NS86 450 aa4.65□□□□□ -1.67
USP48-215ENST00000534705 HDAC5Q9UQL6 1122 aa4.65□□□□□ -1.67
USP48-215ENST00000534705 NOP58Q9Y2X3 529 aaKnown RBP4.65□□□□□ -1.67
USP48-215ENST00000534705 KDM5BQ9UGL1 1544 aa4.65□□□□□ -1.67
USP48-215ENST00000534705 GLI2P10070 1586 aa4.65□□□□□ -1.67
USP48-215ENST00000534705 TNIKQ9UKE5 1360 aa4.65□□□□□ -1.67
USP48-215ENST00000534705 PRR5-ARHGAP8B1AHC4 643 aa4.64□□□□□ -1.67
USP48-215ENST00000534705 GABRDO14764 452 aa4.64□□□□□ -1.67
USP48-215ENST00000534705 KIAA0355O15063 1070 aa4.64□□□□□ -1.67
USP48-215ENST00000534705 OSMP13725 252 aa4.64□□□□□ -1.67
USP48-215ENST00000534705 IBSPP21815 317 aaPredicted RBP4.64□□□□□ -1.67
USP48-215ENST00000534705 MGAT1P26572 445 aa4.64□□□□□ -1.67
USP48-215ENST00000534705 GUCY1A2P33402 732 aa4.64□□□□□ -1.67
USP48-215ENST00000534705 SREBF1P36956 1147 aa4.64□□□□□ -1.67
USP48-215ENST00000534705 CCT2P78371 535 aaKnown RBP4.64□□□□□ -1.67
USP48-215ENST00000534705 FAM47AQ5JRC9 791 aa4.64□□□□□ -1.67
USP48-215ENST00000534705 MICALCLQ6ZW33 695 aa4.64□□□□□ -1.67
USP48-215ENST00000534705 FAM177A1Q8N128 213 aaPredicted RBP4.64□□□□□ -1.67
USP48-215ENST00000534705 DDX55Q8NHQ9 600 aaKnown RBP eCLIP4.64□□□□□ -1.67
USP48-215ENST00000534705 MTMR8Q96EF0 704 aa4.64□□□□□ -1.67
USP48-215ENST00000534705 CYFIP2Q96F07 1278 aa4.64□□□□□ -1.67
USP48-215ENST00000534705 TYW1Q9NV66 732 aaKnown RBP4.64□□□□□ -1.67
USP48-215ENST00000534705 MKS1Q9NXB0 559 aa4.64□□□□□ -1.67
USP48-215ENST00000534705 FAM30AQ9NZY2 134 aa4.64□□□□□ -1.67
USP48-215ENST00000534705 MRFAP1Q9Y605 127 aa4.64□□□□□ -1.67
USP48-215ENST00000534705 HS3ST4Q9Y661 456 aa4.64□□□□□ -1.67
USP48-215ENST00000534705 ATRNL1Q5VV63 1379 aa4.64□□□□□ -1.67
USP48-215ENST00000534705 PTPRGP23470 1445 aa4.63□□□□□ -1.67
USP48-215ENST00000534705 GOLGA3Q08378 1498 aa4.63□□□□□ -1.67
USP48-215ENST00000534705 ABCC10Q5T3U5 1492 aa4.63□□□□□ -1.67
USP48-215ENST00000534705 PLB1Q6P1J6 1458 aa4.63□□□□□ -1.67
USP48-215ENST00000534705 EFCAB5A4FU69 1503 aa4.63□□□□□ -1.67
USP48-215ENST00000534705 DIRC3C9JPN6 131 aa4.63□□□□□ -1.67
USP48-215ENST00000534705 TEX33O43247 280 aa4.63□□□□□ -1.67
USP48-215ENST00000534705 KATNA1O75449 491 aa4.63□□□□□ -1.67
USP48-215ENST00000534705 SNRPA1P09661 255 aaKnown RBP4.63□□□□□ -1.67
USP48-215ENST00000534705 IL2RBP14784 551 aa4.63□□□□□ -1.67
USP48-215ENST00000534705 ALOX15P16050 662 aaPredicted RBP4.63□□□□□ -1.67
USP48-215ENST00000534705 SLC16A1P53985 500 aa4.63□□□□□ -1.67
USP48-215ENST00000534705 ITKQ08881 620 aa4.63□□□□□ -1.67
USP48-215ENST00000534705 BMT2Q1RMZ1 405 aa4.63□□□□□ -1.67
USP48-215ENST00000534705 ABCB5Q2M3G0 1257 aa4.63□□□□□ -1.67
USP48-215ENST00000534705 MFSD14BQ5SR56 506 aa4.63□□□□□ -1.67
USP48-215ENST00000534705 RD3Q7Z3Z2 195 aa4.63□□□□□ -1.67
USP48-215ENST00000534705 ZFP28Q8NHY6 868 aa4.63□□□□□ -1.67
USP48-215ENST00000534705 MDM1Q8TC05 714 aa4.63□□□□□ -1.67
USP48-215ENST00000534705 CEP95Q96GE4 821 aa4.63□□□□□ -1.67
USP48-215ENST00000534705 GPATCH3Q96I76 525 aa4.63□□□□□ -1.67
USP48-215ENST00000534705 FAXDC2Q96IV6 333 aa4.63□□□□□ -1.67
USP48-215ENST00000534705 KCNH6Q9H252 994 aa4.63□□□□□ -1.67
USP48-215ENST00000534705 MANSC1Q9H8J5 431 aa4.63□□□□□ -1.67
USP48-215ENST00000534705 DMRT3Q9NQL9 472 aa4.63□□□□□ -1.67
USP48-215ENST00000534705 MOCS1Q9NZB8 636 aa4.63□□□□□ -1.67
USP48-215ENST00000534705 SAP30BPQ9UHR5 308 aaKnown RBP4.63□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms