RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 CASTOR2A6NHX0 329 aa14.15□□□□□ -0.14
VPS28-216ENST00000533806 EIF3DO15371 548 aaKnown RBP eCLIP14.15□□□□□ -0.14
VPS28-216ENST00000533806 TBX10O75333 385 aa14.15□□□□□ -0.14
VPS28-216ENST00000533806 KIF4AO95239 1232 aa14.15□□□□□ -0.14
VPS28-216ENST00000533806 MYL1P05976 194 aa14.15□□□□□ -0.14
VPS28-216ENST00000533806 CXCL8P10145 99 aa14.15□□□□□ -0.14
VPS28-216ENST00000533806 KCNA5P22460 613 aa14.15□□□□□ -0.14
VPS28-216ENST00000533806 CLCNKBP51801 687 aa14.15□□□□□ -0.14
VPS28-216ENST00000533806 SNW1Q13573 536 aaKnown RBP14.15□□□□□ -0.14
VPS28-216ENST00000533806 FAM26FQ5R3K3 315 aa14.15□□□□□ -0.14
VPS28-216ENST00000533806 FUT10Q6P4F1 479 aa14.15□□□□□ -0.14
VPS28-216ENST00000533806 DCLRE1AQ6PJP8 1040 aa14.15□□□□□ -0.14
VPS28-216ENST00000533806 FSIP1Q8NA03 581 aa14.15□□□□□ -0.14
VPS28-216ENST00000533806 GADD45GIP1Q8TAE8 222 aaPredicted RBP14.15□□□□□ -0.14
VPS28-216ENST00000533806 C18orf25Q96B23 403 aaPredicted RBP14.15□□□□□ -0.14
VPS28-216ENST00000533806 UROC1Q96N76 676 aa14.15□□□□□ -0.14
VPS28-216ENST00000533806 MSTO1Q9BUK6 570 aa14.15□□□□□ -0.14
VPS28-216ENST00000533806 HERC2P3Q9BVR0 1158 aa14.15□□□□□ -0.14
VPS28-216ENST00000533806 IGFLR1Q9H665 355 aa14.15□□□□□ -0.14
VPS28-216ENST00000533806 TMEM206Q9H813 350 aa14.15□□□□□ -0.14
VPS28-216ENST00000533806 GOLGA2P5Q9HBQ8 144 aa14.15□□□□□ -0.14
VPS28-216ENST00000533806 SLC38A7Q9NVC3 462 aa14.15□□□□□ -0.14
VPS28-216ENST00000533806 AGO2Q9UKV8 859 aaKnown RBP14.15□□□□□ -0.14
VPS28-216ENST00000533806 EXOC7Q9UPT5 735 aa14.15□□□□□ -0.14
VPS28-216ENST00000533806 BDP1A6H8Y1 2624 aa14.15□□□□□ -0.14
VPS28-216ENST00000533806 FSD2A1L4K1 749 aa14.14□□□□□ -0.15
VPS28-216ENST00000533806 LACTBL1A8MY62 500 aa14.14□□□□□ -0.15
VPS28-216ENST00000533806 CLASP2O75122 1294 aaKnown RBP14.14□□□□□ -0.15
VPS28-216ENST00000533806 PRPF6O94906 941 aaKnown RBP14.14□□□□□ -0.15
VPS28-216ENST00000533806 ZNF202O95125 648 aa14.14□□□□□ -0.15
VPS28-216ENST00000533806 GARTP22102 1010 aa14.14□□□□□ -0.15
VPS28-216ENST00000533806 KCNQ1P51787 676 aa14.14□□□□□ -0.15
VPS28-216ENST00000533806 RBM10P98175 930 aaKnown RBP14.14□□□□□ -0.15
VPS28-216ENST00000533806 DSG1Q02413 1049 aa14.14□□□□□ -0.15
VPS28-216ENST00000533806 POSTNQ15063 836 aa14.14□□□□□ -0.15
VPS28-216ENST00000533806 BMT2Q1RMZ1 405 aa14.14□□□□□ -0.15
VPS28-216ENST00000533806 AAK1Q2M2I8 961 aa14.14□□□□□ -0.15
VPS28-216ENST00000533806 TJAP1Q5JTD0 557 aa14.14□□□□□ -0.15
VPS28-216ENST00000533806 KRBA2Q6ZNG9 492 aa14.14□□□□□ -0.15
VPS28-216ENST00000533806 C3orf58Q8NDZ4 430 aa14.14□□□□□ -0.15
VPS28-216ENST00000533806 SCFD1Q8WVM8 642 aa14.14□□□□□ -0.15
VPS28-216ENST00000533806 TSPAN18Q96SJ8 248 aa14.14□□□□□ -0.15
VPS28-216ENST00000533806 RXFP1Q9HBX9 757 aa14.14□□□□□ -0.15
VPS28-216ENST00000533806 CLDND1Q9NY35 253 aa14.14□□□□□ -0.15
VPS28-216ENST00000533806 CUL9Q8IWT3 2517 aa14.14□□□□□ -0.15
VPS28-216ENST00000533806 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP14.13□□□□□ -0.15
VPS28-216ENST00000533806 H3BQ06 376 aaPredicted RBP14.13□□□□□ -0.15
VPS28-216ENST00000533806 TGFB1I1O43294 461 aa14.13□□□□□ -0.15
VPS28-216ENST00000533806 TADA2AO75478 443 aa14.13□□□□□ -0.15
VPS28-216ENST00000533806 CNPP09543 421 aaKnown RBP14.13□□□□□ -0.15
VPS28-216ENST00000533806 RPL9P32969 192 aaKnown RBP14.13□□□□□ -0.15
VPS28-216ENST00000533806 MATR3P43243 847 aaKnown RBP eCLIP14.13□□□□□ -0.15
VPS28-216ENST00000533806 ACOT2P49753 483 aa14.13□□□□□ -0.15
VPS28-216ENST00000533806 DPYDQ12882 1025 aa14.13□□□□□ -0.15
VPS28-216ENST00000533806 CD302Q8IX05 232 aa14.13□□□□□ -0.15
VPS28-216ENST00000533806 ZSWIM2Q8NEG5 633 aa14.13□□□□□ -0.15
VPS28-216ENST00000533806 SLC22A17Q8WUG5 538 aa14.13□□□□□ -0.15
VPS28-216ENST00000533806 DDX27Q96GQ7 796 aaKnown RBP14.13□□□□□ -0.15
VPS28-216ENST00000533806 KLHL5Q96PQ7 755 aa14.13□□□□□ -0.15
VPS28-216ENST00000533806 CBWD1Q9BRT8 395 aa14.13□□□□□ -0.15
VPS28-216ENST00000533806 MRPL17Q9NRX2 175 aaKnown RBP14.13□□□□□ -0.15
VPS28-216ENST00000533806 CHMP5Q9NZZ3 219 aa14.13□□□□□ -0.15
VPS28-216ENST00000533806 TCHHQ07283 1943 aa14.13□□□□□ -0.15
VPS28-216ENST00000533806 SF3B1O75533 1304 aaKnown RBP eCLIP14.13□□□□□ -0.153e-6■■■■■ 56
VPS28-216ENST00000533806 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.12□□□□□ -0.15
VPS28-216ENST00000533806 GRXCR2A6NFK2 248 aa14.12□□□□□ -0.15
VPS28-216ENST00000533806 B3GAT3O94766 335 aa14.12□□□□□ -0.15
VPS28-216ENST00000533806 PRR29P0C7W0 189 aa14.12□□□□□ -0.15
VPS28-216ENST00000533806 CYP3A5P20815 502 aa14.12□□□□□ -0.15
VPS28-216ENST00000533806 LRPAP1P30533 357 aa14.12□□□□□ -0.15
VPS28-216ENST00000533806 ANP32AP39687 249 aaKnown RBP14.12□□□□□ -0.15
VPS28-216ENST00000533806 GLUD2P49448 558 aa14.12□□□□□ -0.15
VPS28-216ENST00000533806 STK4Q13043 487 aa14.12□□□□□ -0.15
VPS28-216ENST00000533806 PSMD2Q13200 908 aa14.12□□□□□ -0.15
VPS28-216ENST00000533806 BMS1Q14692 1282 aaKnown RBP14.12□□□□□ -0.15
VPS28-216ENST00000533806 USP41Q3LFD5 358 aa14.12□□□□□ -0.15
VPS28-216ENST00000533806 KMT5BQ4FZB7 885 aa14.12□□□□□ -0.15
VPS28-216ENST00000533806 RTP2Q5QGT7 225 aa14.12□□□□□ -0.15
VPS28-216ENST00000533806 STXBP4Q6ZWJ1 553 aa14.12□□□□□ -0.15
VPS28-216ENST00000533806 TMEM130Q8N3G9 435 aa14.12□□□□□ -0.15
VPS28-216ENST00000533806 KIAA0895Q8NCT3 520 aa14.12□□□□□ -0.15
VPS28-216ENST00000533806 HASPINQ8TF76 798 aa14.12□□□□□ -0.15
VPS28-216ENST00000533806 POMGNT1Q8WZA1 660 aa14.12□□□□□ -0.15
VPS28-216ENST00000533806 B3GALT6Q96L58 329 aa14.12□□□□□ -0.15
VPS28-216ENST00000533806 ASB7Q9H672 318 aa14.12□□□□□ -0.15
VPS28-216ENST00000533806 RPF1Q9H9Y2 349 aaKnown RBP14.12□□□□□ -0.15
VPS28-216ENST00000533806 SLC39A2Q9NP94 309 aa14.12□□□□□ -0.15
VPS28-216ENST00000533806 TUBGCP4Q9UGJ1 667 aa14.12□□□□□ -0.15
VPS28-216ENST00000533806 DERAQ9Y315 318 aa14.12□□□□□ -0.15
VPS28-216ENST00000533806 HCFC2Q9Y5Z7 792 aa14.12□□□□□ -0.15
VPS28-216ENST00000533806 TDRD15B5MCY1 1934 aaKnown RBP14.11□□□□□ -0.15
VPS28-216ENST00000533806 PODXLO00592 558 aa14.11□□□□□ -0.15
VPS28-216ENST00000533806 TEX28O15482 410 aa14.11□□□□□ -0.15
VPS28-216ENST00000533806 RHOBTB3O94955 611 aa14.11□□□□□ -0.15
VPS28-216ENST00000533806 C1RP00736 705 aa14.11□□□□□ -0.15
VPS28-216ENST00000533806 RPN1P04843 607 aaKnown RBP14.11□□□□□ -0.15
VPS28-216ENST00000533806 FGFR3P22607 806 aa14.11□□□□□ -0.15
VPS28-216ENST00000533806 WNT7BP56706 349 aa14.11□□□□□ -0.15
VPS28-216ENST00000533806 PPP2R3AQ06190 1150 aa14.11□□□□□ -0.15
VPS28-216ENST00000533806 SPAG1Q07617 926 aa14.11□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms