RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 METP08581 1390 aa5.29□□□□□ -1.56
CD44-235ENST00000532339 KANK1Q14678 1352 aa5.29□□□□□ -1.56
CD44-235ENST00000532339 COL14A1Q05707 1796 aaKnown RBP5.29□□□□□ -1.56
CD44-235ENST00000532339 LMTK2Q8IWU2 1503 aa5.29□□□□□ -1.56
CD44-235ENST00000532339 FAM20BO75063 409 aa5.29□□□□□ -1.56
CD44-235ENST00000532339 RAB11FIP3O75154 756 aa5.29□□□□□ -1.56
CD44-235ENST00000532339 RPS6KA4O75676 772 aa5.29□□□□□ -1.56
CD44-235ENST00000532339 STC2O76061 302 aa5.29□□□□□ -1.56
CD44-235ENST00000532339 SEC24DO94855 1032 aaPredicted RBP5.29□□□□□ -1.56
CD44-235ENST00000532339 TERF2Q15554 542 aa5.29□□□□□ -1.56
CD44-235ENST00000532339 DALRD3Q5D0E6 543 aaKnown RBP5.29□□□□□ -1.56
CD44-235ENST00000532339 C1QL3Q5VWW1 255 aa5.29□□□□□ -1.56
CD44-235ENST00000532339 LMBR1LQ6UX01 489 aa5.29□□□□□ -1.56
CD44-235ENST00000532339 KRT28Q7Z3Y7 464 aa5.29□□□□□ -1.56
CD44-235ENST00000532339 MRGPRGQ86SM5 289 aa5.29□□□□□ -1.56
CD44-235ENST00000532339 ULK2Q8IYT8 1036 aa5.29□□□□□ -1.56
CD44-235ENST00000532339 OR5M3Q8NGP4 307 aa5.29□□□□□ -1.56
CD44-235ENST00000532339 SLC25A43Q8WUT9 341 aaPredicted RBP5.29□□□□□ -1.56
CD44-235ENST00000532339 GAB3Q8WWW8 586 aa5.29□□□□□ -1.56
CD44-235ENST00000532339 RSAD2Q8WXG1 361 aa5.29□□□□□ -1.56
CD44-235ENST00000532339 HAS1Q92839 578 aa5.29□□□□□ -1.56
CD44-235ENST00000532339 NRDE2Q9H7Z3 1164 aa5.29□□□□□ -1.56
CD44-235ENST00000532339 GPRC5BQ9NZH0 403 aa5.29□□□□□ -1.56
CD44-235ENST00000532339 C11orf21Q9P2W6 132 aa5.29□□□□□ -1.56
CD44-235ENST00000532339 TRPS1Q9UHF7 1281 aa5.29□□□□□ -1.56
CD44-235ENST00000532339 KCNG1Q9UIX4 513 aa5.29□□□□□ -1.56
CD44-235ENST00000532339 NUMBLQ9Y6R0 609 aa5.29□□□□□ -1.56
CD44-235ENST00000532339 OVOS2A0A0G2JMS6 1433 aa5.29□□□□□ -1.56
CD44-235ENST00000532339 OVOS2A0A0J9YW53 1432 aa5.29□□□□□ -1.56
CD44-235ENST00000532339 OVOS2Q6IE36 1432 aa5.29□□□□□ -1.56
CD44-235ENST00000532339 ARHGEF5Q12774 1597 aa5.29□□□□□ -1.56
CD44-235ENST00000532339 ARHGEF10O15013 1369 aa5.29□□□□□ -1.56
CD44-235ENST00000532339 PXDNLA1KZ92 1463 aa5.28□□□□□ -1.56
CD44-235ENST00000532339 PRSS38A1L453 326 aa5.28□□□□□ -1.56
CD44-235ENST00000532339 HOXA3O43365 443 aaPredicted RBP5.28□□□□□ -1.56
CD44-235ENST00000532339 PPFIA4O75335 1185 aa5.28□□□□□ -1.56
CD44-235ENST00000532339 FKBP9O95302 570 aa5.28□□□□□ -1.56
CD44-235ENST00000532339 HMGB1P09429 215 aaKnown RBP5.28□□□□□ -1.56
CD44-235ENST00000532339 NCLP19338 710 aaKnown RBP5.28□□□□□ -1.56
CD44-235ENST00000532339 ADCYAP1R1P41586 468 aa5.28□□□□□ -1.56
CD44-235ENST00000532339 WNT3AP56704 352 aa5.28□□□□□ -1.56
CD44-235ENST00000532339 INHBEP58166 350 aa5.28□□□□□ -1.56
CD44-235ENST00000532339 SMN1Q16637 294 aaKnown RBP5.28□□□□□ -1.56
CD44-235ENST00000532339 FAM214AQ32MH5 1076 aa5.28□□□□□ -1.56
CD44-235ENST00000532339 METTL24Q5JXM2 366 aa5.28□□□□□ -1.56
CD44-235ENST00000532339 FKBP9P1Q75LS8 142 aa5.28□□□□□ -1.56
CD44-235ENST00000532339 ZNF627Q7L945 461 aa5.28□□□□□ -1.56
CD44-235ENST00000532339 TAS1R1Q7RTX1 841 aa5.28□□□□□ -1.56
CD44-235ENST00000532339 KIAA0907Q7Z7F0 614 aaPredicted RBP5.28□□□□□ -1.56
CD44-235ENST00000532339 CXorf67Q86X51 503 aaPredicted RBP5.28□□□□□ -1.56
CD44-235ENST00000532339 GLB1L2Q8IW92 636 aa5.28□□□□□ -1.56
CD44-235ENST00000532339 SYNE4Q8N205 404 aa5.28□□□□□ -1.56
CD44-235ENST00000532339 GLB1L3Q8NCI6 653 aaPredicted RBP5.28□□□□□ -1.56
CD44-235ENST00000532339 IL17RAQ96F46 866 aa5.28□□□□□ -1.56
CD44-235ENST00000532339 CPPED1Q9BRF8 314 aaPredicted RBP5.28□□□□□ -1.56
CD44-235ENST00000532339 PDCD2LQ9BRP1 358 aa5.28□□□□□ -1.56
CD44-235ENST00000532339 FDXACB1Q9BRP7 624 aaPredicted RBP5.28□□□□□ -1.56
CD44-235ENST00000532339 CASKIN1Q8WXD9 1431 aa5.28□□□□□ -1.56
CD44-235ENST00000532339 COL24A1Q17RW2 1714 aa5.28□□□□□ -1.56
CD44-235ENST00000532339 ABCA3Q99758 1704 aa5.28□□□□□ -1.56
CD44-235ENST00000532339 DUOX2Q9NRD8 1548 aa5.28□□□□□ -1.56
CD44-235ENST00000532339 TMEM191CA6NGB0 347 aa5.27□□□□□ -1.57
CD44-235ENST00000532339 TECPR2O15040 1411 aa5.27□□□□□ -1.57
CD44-235ENST00000532339 RECQL4O94761 1208 aa5.27□□□□□ -1.57
CD44-235ENST00000532339 HSPA8P11142 646 aaKnown RBP5.27□□□□□ -1.57
CD44-235ENST00000532339 HK1P19367 917 aa5.27□□□□□ -1.57
CD44-235ENST00000532339 CASRP41180 1078 aa5.27□□□□□ -1.57
CD44-235ENST00000532339 DUSP2Q05923 314 aa5.27□□□□□ -1.57
CD44-235ENST00000532339 PPARAQ07869 468 aa5.27□□□□□ -1.57
CD44-235ENST00000532339 MRPL49Q13405 166 aaKnown RBP5.27□□□□□ -1.57
CD44-235ENST00000532339 DDB1Q16531 1140 aa5.27□□□□□ -1.57
CD44-235ENST00000532339 PLEKHG4Q58EX7 1191 aa5.27□□□□□ -1.57
CD44-235ENST00000532339 FAM83AQ86UY5 434 aa5.27□□□□□ -1.57
CD44-235ENST00000532339 ZNF276Q8N554 614 aa5.27□□□□□ -1.57
CD44-235ENST00000532339 SLC17A8Q8NDX2 589 aa5.27□□□□□ -1.57
CD44-235ENST00000532339 LENG9Q96B70 501 aa5.27□□□□□ -1.57
CD44-235ENST00000532339 EMC7Q9NPA0 242 aa5.27□□□□□ -1.57
CD44-235ENST00000532339 PPP2R3BQ9Y5P8 575 aa5.27□□□□□ -1.57
CD44-235ENST00000532339 MYO5BQ9ULV0 1848 aa5.26□□□□□ -1.57
CD44-235ENST00000532339 A0A1W2PR48 441 aa5.26□□□□□ -1.57
CD44-235ENST00000532339 LCHNA4D1U4 455 aa5.26□□□□□ -1.57
CD44-235ENST00000532339 GSG1L2A8MUP6 293 aa5.26□□□□□ -1.57
CD44-235ENST00000532339 GRXCR1A8MXD5 290 aa5.26□□□□□ -1.57
CD44-235ENST00000532339 TRIM24O15164 1050 aa5.26□□□□□ -1.57
CD44-235ENST00000532339 KDM1AO60341 852 aa5.26□□□□□ -1.57
CD44-235ENST00000532339 RAMP2O60895 175 aa5.26□□□□□ -1.57
CD44-235ENST00000532339 DNAJC6O75061 913 aa5.26□□□□□ -1.57
CD44-235ENST00000532339 GZMKP49863 264 aa5.26□□□□□ -1.57
CD44-235ENST00000532339 MANFP55145 182 aaKnown RBP5.26□□□□□ -1.57
CD44-235ENST00000532339 MGAT5Q09328 741 aa5.26□□□□□ -1.57
CD44-235ENST00000532339 MRGPREQ86SM8 312 aa5.26□□□□□ -1.57
CD44-235ENST00000532339 LEO1Q8WVC0 666 aaPredicted RBP5.26□□□□□ -1.57
CD44-235ENST00000532339 SLC5A5Q92911 643 aa5.26□□□□□ -1.57
CD44-235ENST00000532339 FAM193BQ96PV7 902 aaPredicted RBP5.26□□□□□ -1.57
CD44-235ENST00000532339 MS4A5Q9H3V2 200 aa5.26□□□□□ -1.57
CD44-235ENST00000532339 PRSS50Q9UI38 385 aa5.26□□□□□ -1.57
CD44-235ENST00000532339 SORCS3Q9UPU3 1222 aa5.26□□□□□ -1.57
CD44-235ENST00000532339 HDAC5Q9UQL6 1122 aa5.26□□□□□ -1.57
CD44-235ENST00000532339 NOC2LQ9Y3T9 749 aaKnown RBP5.26□□□□□ -1.57
CD44-235ENST00000532339 GCC2Q8IWJ2 1684 aa5.26□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms