RNA–Protein interactions for RNA: ENST00000531727.5

CPSF1-207, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3 BASIC

Gene CPSF1, Length 704 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-207ENST00000531727 ATOH1Q92858 354 aaPredicted RBP18.45■□□□□ 0.54
CPSF1-207ENST00000531727 SNX27Q96L92 541 aa18.45■□□□□ 0.54
CPSF1-207ENST00000531727 PNMA5Q96PV4 448 aa18.45■□□□□ 0.54
CPSF1-207ENST00000531727 NTPCRQ9BSD7 190 aaKnown RBP18.45■□□□□ 0.54
CPSF1-207ENST00000531727 VWA3AA6NCI4 1184 aa18.44■□□□□ 0.54
CPSF1-207ENST00000531727 H0Y858 1186 aa18.44■□□□□ 0.54
CPSF1-207ENST00000531727 ABLIM1O14639 778 aa18.44■□□□□ 0.54
CPSF1-207ENST00000531727 SLC16A4O15374 487 aa18.44■□□□□ 0.54
CPSF1-207ENST00000531727 TRAPPC3O43617 180 aa18.44■□□□□ 0.54
CPSF1-207ENST00000531727 NPR3P17342 541 aa18.44■□□□□ 0.54
CPSF1-207ENST00000531727 FSHRP23945 695 aa18.44■□□□□ 0.54
CPSF1-207ENST00000531727 OR1D2P34982 312 aa18.44■□□□□ 0.54
CPSF1-207ENST00000531727 MCM2P49736 904 aa18.44■□□□□ 0.54
CPSF1-207ENST00000531727 ARL6IP4Q66PJ3 421 aaKnown RBP18.44■□□□□ 0.54
CPSF1-207ENST00000531727 MPZL3Q6UWV2 235 aa18.44■□□□□ 0.54
CPSF1-207ENST00000531727 GRASPQ7Z6J2 395 aaPredicted RBP18.44■□□□□ 0.54
CPSF1-207ENST00000531727 SIX5Q8N196 739 aa18.44■□□□□ 0.54
CPSF1-207ENST00000531727 SYT2Q8N9I0 419 aaPredicted RBP18.44■□□□□ 0.54
CPSF1-207ENST00000531727 C3orf58Q8NDZ4 430 aa18.44■□□□□ 0.54
CPSF1-207ENST00000531727 SPIRE2Q8WWL2 714 aa18.44■□□□□ 0.54
CPSF1-207ENST00000531727 DDX27Q96GQ7 796 aaKnown RBP18.44■□□□□ 0.54
CPSF1-207ENST00000531727 TCHPQ9BT92 498 aa18.44■□□□□ 0.54
CPSF1-207ENST00000531727 UPF2Q9HAU5 1272 aaKnown RBP18.44■□□□□ 0.54
CPSF1-207ENST00000531727 SLC38A7Q9NVC3 462 aa18.44■□□□□ 0.54
CPSF1-207ENST00000531727 KCNG1Q9UIX4 513 aa18.44■□□□□ 0.54
CPSF1-207ENST00000531727 ZFP37Q9Y6Q3 630 aaPredicted RBP18.44■□□□□ 0.54
CPSF1-207ENST00000531727 MYH11P35749 1972 aa18.44■□□□□ 0.54
CPSF1-207ENST00000531727 ANHXE9PGG2 379 aa18.43■□□□□ 0.54
CPSF1-207ENST00000531727 XYLBO75191 536 aa18.43■□□□□ 0.54
CPSF1-207ENST00000531727 SRFP11831 508 aa18.43■□□□□ 0.54
CPSF1-207ENST00000531727 PLS3P13797 630 aa18.43■□□□□ 0.54
CPSF1-207ENST00000531727 KCNE1P15382 129 aa18.43■□□□□ 0.54
CPSF1-207ENST00000531727 AOC1P19801 751 aa18.43■□□□□ 0.54
CPSF1-207ENST00000531727 TKTP29401 623 aaKnown RBP18.43■□□□□ 0.54
CPSF1-207ENST00000531727 SLC12A3P55017 1021 aa18.43■□□□□ 0.54
CPSF1-207ENST00000531727 SOX4Q06945 474 aaPredicted RBP18.43■□□□□ 0.54
CPSF1-207ENST00000531727 RAD51AP2Q09MP3 1159 aa18.43■□□□□ 0.54
CPSF1-207ENST00000531727 STRN3Q13033 797 aa18.43■□□□□ 0.54
CPSF1-207ENST00000531727 ANKS3Q6ZW76 656 aa18.43■□□□□ 0.54
CPSF1-207ENST00000531727 ZMAT2Q96NC0 199 aaKnown RBP18.43■□□□□ 0.54
CPSF1-207ENST00000531727 ACAP3Q96P50 834 aa18.43■□□□□ 0.54
CPSF1-207ENST00000531727 KCND2Q9NZV8 630 aa18.43■□□□□ 0.54
CPSF1-207ENST00000531727 WNT16Q9UBV4 365 aa18.43■□□□□ 0.54
CPSF1-207ENST00000531727 BACE2Q9Y5Z0 518 aa18.43■□□□□ 0.54
CPSF1-207ENST00000531727 CITO14578 2027 aa18.42■□□□□ 0.54
CPSF1-207ENST00000531727 I3L4J1 428 aa18.42■□□□□ 0.54
CPSF1-207ENST00000531727 CCL16O15467 120 aa18.42■□□□□ 0.54
CPSF1-207ENST00000531727 CFHP08603 1231 aa18.42■□□□□ 0.54
CPSF1-207ENST00000531727 POU2F2P09086 479 aa18.42■□□□□ 0.54
CPSF1-207ENST00000531727 PLA2G4BP0C869 781 aa18.42■□□□□ 0.54
CPSF1-207ENST00000531727 MAPTP10636 758 aaKnown RBP18.42■□□□□ 0.54
CPSF1-207ENST00000531727 BRCC3P46736 316 aa18.42■□□□□ 0.54
CPSF1-207ENST00000531727 SMTNP53814 917 aa18.42■□□□□ 0.54
CPSF1-207ENST00000531727 HTR4Q13639 388 aa18.42■□□□□ 0.54
CPSF1-207ENST00000531727 UVSSAQ2YD98 709 aa18.42■□□□□ 0.54
CPSF1-207ENST00000531727 TMEM119Q4V9L6 283 aa18.42■□□□□ 0.54
CPSF1-207ENST00000531727 AXDND1Q5T1B0 1012 aaPredicted RBP18.42■□□□□ 0.54
CPSF1-207ENST00000531727 RSPO2Q6UXX9 243 aaPredicted RBP18.42■□□□□ 0.54
CPSF1-207ENST00000531727 TMEM161BQ8NDZ6 487 aa18.42■□□□□ 0.54
CPSF1-207ENST00000531727 SLC7A14Q8TBB6 771 aa18.42■□□□□ 0.54
CPSF1-207ENST00000531727 CDK5RAP3Q96JB5 506 aa18.42■□□□□ 0.54
CPSF1-207ENST00000531727 PLIN2Q99541 437 aa18.42■□□□□ 0.54
CPSF1-207ENST00000531727 RTP3Q9BQQ7 232 aa18.42■□□□□ 0.54
CPSF1-207ENST00000531727 CNTN3Q9P232 1028 aa18.42■□□□□ 0.54
CPSF1-207ENST00000531727 SMC3Q9UQE7 1217 aa18.42■□□□□ 0.54
CPSF1-207ENST00000531727 CDY1Q9Y6F8 540 aa18.42■□□□□ 0.54
CPSF1-207ENST00000531727 PDCD11Q14690 1871 aaKnown RBP18.41■□□□□ 0.54
CPSF1-207ENST00000531727 USP34Q70CQ2 3546 aa18.41■□□□□ 0.54
CPSF1-207ENST00000531727 PODXLO00592 558 aa18.41■□□□□ 0.54
CPSF1-207ENST00000531727 PI15O43692 258 aa18.41■□□□□ 0.54
CPSF1-207ENST00000531727 TOM1L1O75674 476 aa18.41■□□□□ 0.54
CPSF1-207ENST00000531727 HARSP12081 509 aaKnown RBP18.41■□□□□ 0.54
CPSF1-207ENST00000531727 NTHL1P78549 312 aa18.41■□□□□ 0.54
CPSF1-207ENST00000531727 NOLC1Q14978 699 aaKnown RBP eCLIP18.41■□□□□ 0.54
CPSF1-207ENST00000531727 RTL10Q7L3V2 364 aa18.41■□□□□ 0.54
CPSF1-207ENST00000531727 ZBTB45Q96K62 511 aaPredicted RBP18.41■□□□□ 0.54
CPSF1-207ENST00000531727 AK8Q96MA6 479 aa18.41■□□□□ 0.54
CPSF1-207ENST00000531727 CDH7Q9ULB5 785 aa18.41■□□□□ 0.54
CPSF1-207ENST00000531727 POLIQ9UNA4 740 aa18.41■□□□□ 0.54
CPSF1-207ENST00000531727 NUMBLQ9Y6R0 609 aa18.41■□□□□ 0.54
CPSF1-207ENST00000531727 KRBA1A5PL33 1030 aa18.4■□□□□ 0.54
CPSF1-207ENST00000531727 MEFVO15553 781 aaPredicted RBP18.4■□□□□ 0.54
CPSF1-207ENST00000531727 SLC26A4O43511 780 aa18.4■□□□□ 0.54
CPSF1-207ENST00000531727 RPL9P32969 192 aaKnown RBP18.4■□□□□ 0.54
CPSF1-207ENST00000531727 ZPBP2Q6X784 338 aa18.4■□□□□ 0.54
CPSF1-207ENST00000531727 ANKFY1Q9P2R3 1169 aa18.4■□□□□ 0.54
CPSF1-207ENST00000531727 CA14Q9ULX7 337 aa18.4■□□□□ 0.54
CPSF1-207ENST00000531727 ZSCAN21Q9Y5A6 473 aaPredicted RBP18.4■□□□□ 0.54
CPSF1-207ENST00000531727 DOCK6Q96HP0 2047 aa18.39■□□□□ 0.53
CPSF1-207ENST00000531727 NPHP3-ACAD11A0A0J9YXS1 232 aa18.39■□□□□ 0.53
CPSF1-207ENST00000531727 PROB1E7EW31 1015 aa18.39■□□□□ 0.53
CPSF1-207ENST00000531727 GFRA3O60609 400 aa18.39■□□□□ 0.53
CPSF1-207ENST00000531727 NCKAP1LP55160 1127 aa18.39■□□□□ 0.53
CPSF1-207ENST00000531727 MCL1Q07820 350 aa18.39■□□□□ 0.53
CPSF1-207ENST00000531727 SLC10A6Q3KNW5 377 aa18.39■□□□□ 0.53
CPSF1-207ENST00000531727 ARSHQ5FYA8 562 aa18.39■□□□□ 0.53
CPSF1-207ENST00000531727 VARS2Q5ST30 1063 aaKnown RBP18.39■□□□□ 0.53
CPSF1-207ENST00000531727 LARP1BQ659C4 914 aaKnown RBP18.39■□□□□ 0.53
CPSF1-207ENST00000531727 SLC8B1Q6J4K2 584 aa18.39■□□□□ 0.53
CPSF1-207ENST00000531727 CCDC105Q8IYK2 499 aa18.39■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms